Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,917,590	T→C	V688A (GTC→GCC)	b1834 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,917,590	0	T	C	100.0%	677.0 / NA	205	V688A (GTC→GCC)	b1834	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (109/96); total (109/96)

Only 100 of 206 total aligned reads displayed.

TCGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGTCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCC  >  NC_000913/1917500‑1917679

tcGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGccc                                                                                         >  1:4532875/1‑93 (MQ=255)

 cGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCa                                                                                        <  1:1892188/93‑1 (MQ=255)

 cGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCa                                                                                        <  2:1087364/93‑1 (MQ=255)

 cGGTATTGATATAGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCa                                                                                        <  2:3785597/93‑1 (MQ=255)

  ggTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAg                                                                                       <  2:1520704/93‑1 (MQ=255)

  ggTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAg                                                                                       <  1:358755/93‑1 (MQ=255)

   gTATTGATATCGGCAAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGa                                                                                      <  1:59445/93‑1 (MQ=255)

     aTTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGAcc                                                                                    <  1:5099897/93‑1 (MQ=255)

       tGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCtt                                                                                  <  1:5411024/93‑1 (MQ=255)

          tatCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGc                                                                               <  2:2244757/93‑1 (MQ=255)

           atCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCt                                                                              >  1:5630091/1‑93 (MQ=255)

            tCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTc                                                                             <  2:5906837/93‑1 (MQ=255)

            tCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTc                                                                             >  2:1437991/1‑93 (MQ=255)

               ggCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTAACCGGAATATGCCCAGACCTTTGCTcgcg                                                                          >  1:2986289/1‑93 (MQ=255)

                 cAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCggt                                                                        <  1:642372/93‑1 (MQ=255)

                 cAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCggg                                                                        >  2:54004/1‑92 (MQ=255)

                  aaaTCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCggtg                                                                       <  1:6007765/93‑1 (MQ=255)

                   aaTCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCggtgg                                                                      <  1:2399846/93‑1 (MQ=255)

                    aTCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCggtggt                                                                     <  1:4143473/93‑1 (MQ=255)

                      ccAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTAc                                                                   <  1:1724037/93‑1 (MQ=255)

                       cAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTAcg                                                                  >  1:1024211/1‑93 (MQ=255)

                         gACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTAcgcg                                                                >  1:4100687/1‑93 (MQ=255)

                          aCGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACgcgc                                                               >  1:4927366/1‑93 (MQ=255)

                            gCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCtt                                                             >  2:4018715/1‑93 (MQ=255)

                            gCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCtt                                                             >  1:5739955/1‑93 (MQ=255)

                            gCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCtt                                                             >  2:1938603/1‑93 (MQ=255)

                             cTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTtc                                                            <  1:4822984/93‑1 (MQ=255)

                                gATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCa                                                         <  1:5578020/93‑1 (MQ=255)

                                 aTCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAg                                                        >  2:2327152/1‑93 (MQ=255)

                                 aTCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAg                                                        >  1:3820428/1‑93 (MQ=255)

                                 aTCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAg                                                        <  1:4637052/93‑1 (MQ=255)

                                  tCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGt                                                       <  2:375213/93‑1 (MQ=255)

                                   cTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTg                                                      >  1:4270635/1‑93 (MQ=255)

                                    tGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTgg                                                     >  2:5081005/1‑93 (MQ=255)

                                     gATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGt                                                    <  2:3573426/93‑1 (MQ=255)

                                      aTTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTc                                                   >  2:2839485/1‑93 (MQ=255)

                                      aTTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTc                                                   >  1:2441187/1‑93 (MQ=255)

                                        tACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTcac                                                 >  1:3759037/1‑93 (MQ=255)

                                         aCCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTcaca                                                <  1:2082266/93‑1 (MQ=255)

                                          ccGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCacac                                               <  2:5176224/93‑1 (MQ=255)

                                          ccGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCacac                                               <  2:2619273/93‑1 (MQ=255)

                                           cgcacgcaATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACAcc                                              >  2:5789323/1‑93 (MQ=255)

                                           cgcacgcaATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACAcc                                              <  1:1753615/93‑1 (MQ=255)

                                             cacgcaATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGc                                            >  2:1645120/1‑93 (MQ=255)

                                                gcaATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCaaa                                         <  1:3137867/93‑1 (MQ=255)

                                                 caATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAAt                                        <  2:3913463/93‑1 (MQ=255)

                                                 caATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAAt                                        >  1:3813733/1‑93 (MQ=255)

                                                   aTGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAAttt                                      <  1:2024385/93‑1 (MQ=255)

                                                    tGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTc                                     <  1:5345732/93‑1 (MQ=255)

                                                    tGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTc                                     <  1:6128302/93‑1 (MQ=255)

                                                    tGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTc                                     <  2:322545/93‑1 (MQ=255)

                                                      aaGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCgg                                   >  2:2892726/1‑93 (MQ=255)

                                                      aaGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCgg                                   <  2:3676387/93‑1 (MQ=255)

                                                      aaGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCgg                                   >  2:4857776/1‑93 (MQ=255)

                                                       aGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGc                                  <  2:4482538/93‑1 (MQ=255)

                                                        gTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCa                                 <  1:5521442/93‑1 (MQ=255)

                                                         tACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAg                                >  1:1271383/1‑93 (MQ=255)

                                                          aCAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGc                               <  1:824205/93‑1 (MQ=255)

                                                            aGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTg                             >  1:2524129/1‑93 (MQ=255)

                                                             ggCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTgg                            <  2:5488844/93‑1 (MQ=255)

                                                             ggCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTgg                            <  2:180458/93‑1 (MQ=255)

                                                              gCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGc                           >  1:1147701/1‑93 (MQ=255)

                                                              gCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGc                           >  2:117492/1‑93 (MQ=255)

                                                              gCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGc                           <  1:4027408/93‑1 (MQ=255)

                                                               cAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCg                          >  2:1311712/1‑93 (MQ=255)

                                                               cAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCg                          >  1:4972056/1‑93 (MQ=255)

                                                                 aaGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGtt                        >  1:2387339/1‑93 (MQ=255)

                                                                 aaGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGtt                        >  1:3970596/1‑93 (MQ=255)

                                                                     cGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGc                    <  2:2505263/93‑1 (MQ=255)

                                                                     cGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGc                    >  1:2213934/1‑93 (MQ=255)

                                                                      ggTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCa                   >  2:1893818/1‑93 (MQ=255)

                                                                      ggTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCa                   <  2:687408/93‑1 (MQ=255)

                                                                        tACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATc                 >  1:2818401/1‑93 (MQ=255)

                                                                         aCTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCt                >  2:1692334/1‑93 (MQ=255)

                                                                          cTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCtt               >  1:4862163/1‑93 (MQ=255)

                                                                          cTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCtt               <  1:1524236/93‑1 (MQ=255)

                                                                           tttACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTg              >  2:1339768/1‑93 (MQ=255)

                                                                            ttACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGa             <  1:3496957/93‑1 (MQ=255)

                                                                            ttACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGa             >  1:6274690/1‑93 (MQ=255)

                                                                             tACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGAt            >  2:4693571/1‑93 (MQ=255)

                                                                              aCCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATa           >  1:5010812/1‑93 (MQ=255)

                                                                              aCCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATa           >  2:2745123/1‑93 (MQ=255)

                                                                               cccGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATAc          >  2:5012864/1‑93 (MQ=255)

                                                                               cccGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAAATTCGGCAGCTGGCGTTGAGCATCTTGATAc          >  2:6289922/1‑93 (MQ=255)

                                                                                ccGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACt         >  2:5628238/1‑93 (MQ=255)

                                                                                ccGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACt         >  2:1567753/1‑93 (MQ=255)

                                                                                 cGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTa        >  1:5878084/1‑93 (MQ=255)

                                                                                  ggAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAt       <  1:5211976/93‑1 (MQ=255)

                                                                                  ggAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGGCACACCGCAAATTTCGGCAGCTGGCGGTGAGCATCTTGATACTAt       >  2:3831950/1‑93 (MQ=255)

                                                                                   gAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAtc      >  1:2715555/1‑93 (MQ=255)

                                                                                   gAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAtc      <  1:456326/93‑1 (MQ=255)

                                                                                   gAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAtc      >  2:3397232/1‑93 (MQ=255)

                                                                                    aaTATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAtcc     >  2:4378239/1‑93 (MQ=255)

                                                                                    aaTATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAtcc     <  2:3734816/93‑1 (MQ=255)

                                                                                     atatGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAtcct    <  1:224321/93‑1 (MQ=255)

                                                                                     atatGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAtcct    <  2:4287110/93‑1 (MQ=255)

                                                                                      tatGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAtcctc   >  1:1333590/1‑93 (MQ=255)

                                                                                      tatGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAtcctc   >  2:1263398/1‑93 (MQ=255)

                                                                                       atGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAtcctcc  >  1:3251293/1‑93 (MQ=255)

                                                                                       atGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTAtcctcc  >  2:816211/1‑93 (MQ=255)

TCGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGTCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCC  >  NC_000913/1917500‑1917679

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATCTCGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGTCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCCAGCC  >  NC_000913/1917497‑1917683

ATCTCGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGC                                                                                               >  SRR4302533.2273024/1‑94 (MQ=60)

ATCTCGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGC                                                                                               <  SRR4302533.2869522/94‑1 (MQ=60)

 TCTCGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCC                                                                                              <  SRR4302533.1855998/94‑1 (MQ=60)

  CTCGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCATAGGCGGTACTTTACCCGGAATATGCCC                                                                                             <  SRR4302533.2460572/94‑1 (MQ=60)

  CTCGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCC                                                                                             <  SRR4302533.4842056/94‑1 (MQ=60)

  CTCGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCC                                                                                             >  SRR4302533.4560321/1‑94 (MQ=60)

    CGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAG                                                                                           <  SRR4302533.1903737/94‑1 (MQ=60)

     GGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGA                                                                                          <  SRR4302533.360938/94‑1 (MQ=60)

      GTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGAC                                                                                         <  SRR4302533.1748756/94‑1 (MQ=60)

      GTATTGATATCGGCAAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGAC                                                                                         <  SRR4302533.59835/94‑1 (MQ=60)

       TATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACC                                                                                        >  SRR4302533.3430555/1‑94 (MQ=60)

        ATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCT                                                                                       <  SRR4302533.5130705/94‑1 (MQ=60)

        ATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCT                                                                                       <  SRR4302533.2404130/94‑1 (MQ=60)

         TTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTT                                                                                      <  SRR4302533.3060983/94‑1 (MQ=60)

          TGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTT                                                                                     <  SRR4302533.5443558/94‑1 (MQ=60)

          TGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTT                                                                                     >  SRR4302533.1065859/1‑94 (MQ=60)

           GATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTG                                                                                    <  SRR4302533.2765158/94‑1 (MQ=60)

           GATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTG                                                                                    <  SRR4302533.975999/94‑1 (MQ=60)

            ATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGC                                                                                   <  SRR4302533.3618999/94‑1 (MQ=60)

            ATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGC                                                                                   <  SRR4302533.4113495/94‑1 (MQ=60)

             TATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCT                                                                                  >  SRR4302533.5664137/1‑94 (MQ=60)

                 GGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTAACCGGAATATGCCCAGACCTTTGCTCGCG                                                                              >  SRR4302533.3004558/1‑94 (MQ=60)

                   GCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGT                                                                            <  SRR4302533.4702852/94‑1 (MQ=60)

                    CAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTG                                                                           <  SRR4302533.4943427/94‑1 (MQ=60)

                    CAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTG                                                                           <  SRR4302533.646149/94‑1 (MQ=60)

                     AAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGG                                                                          >  SRR4302533.5771383/1‑94 (MQ=60)

                     AAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGG                                                                          <  SRR4302533.6044165/94‑1 (MQ=60)

                      AATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGT                                                                         <  SRR4302533.4603073/94‑1 (MQ=60)

                      AATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGT                                                                         <  SRR4302533.2414665/94‑1 (MQ=60)

                       ATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTA                                                                        <  SRR4302533.4168591/94‑1 (MQ=60)

                       ATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTA                                                                        >  SRR4302533.558968/1‑94 (MQ=60)

                       ATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTA                                                                        >  SRR4302533.4837922/1‑94 (MQ=60)

                         CCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACG                                                                      >  SRR4302533.1030232/1‑94 (MQ=60)

                         CCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACG                                                                      <  SRR4302533.1734496/94‑1 (MQ=60)

                         CCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACG                                                                      >  SRR4302533.5662589/1‑94 (MQ=60)

                           AGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCG                                                                    >  SRR4302533.1332366/1‑94 (MQ=60)

                           AGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCG                                                                    >  SRR4302533.4125643/1‑94 (MQ=60)

                            GACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGC                                                                   >  SRR4302533.4957207/1‑94 (MQ=60)

                              CGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTT                                                                 >  SRR4302533.5774593/1‑94 (MQ=60)

                               GCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTC                                                                >  SRR4302533.3944547/1‑94 (MQ=60)

                                CTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCT                                                               <  SRR4302533.4852204/94‑1 (MQ=60)

                                CTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCT                                                               >  SRR4302533.400263/1‑94 (MQ=60)

                                 TGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTC                                                              <  SRR4302533.192053/94‑1 (MQ=60)

                                  GGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCA                                                             <  SRR4302533.6165583/94‑1 (MQ=60)

                                   GATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAG                                                            <  SRR4302533.5611732/94‑1 (MQ=60)

                                   GATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAG                                                            >  SRR4302533.2315807/1‑94 (MQ=60)

                                   GATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAG                                                            >  SRR4302533.3843789/1‑94 (MQ=60)

                                    ATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGT                                                           <  SRR4302533.4665151/94‑1 (MQ=60)

                                     TCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTG                                                          >  SRR4302533.4296341/1‑94 (MQ=60)

                                      CTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGG                                                         <  SRR4302533.1687969/94‑1 (MQ=60)

                                       TGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGT                                                        >  SRR4302533.2228560/1‑94 (MQ=60)

                                       TGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGT                                                        >  SRR4302533.5547739/1‑94 (MQ=60)

                                        GATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTC                                                       >  SRR4302533.2456260/1‑94 (MQ=60)

                                        GATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTC                                                       <  SRR4302533.4323545/94‑1 (MQ=60)

                                        GATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTC                                                       <  SRR4302533.1192826/94‑1 (MQ=60)

                                          TTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCAC                                                     >  SRR4302533.3782080/1‑94 (MQ=60)

                                          TTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCAC                                                     >  SRR4302533.222150/1‑94 (MQ=60)

                                            ACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACAC                                                   <  SRR4302533.2095082/94‑1 (MQ=60)

                                             CCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACC                                                  <  SRR4302533.3596611/94‑1 (MQ=60)

                                              CGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCG                                                 >  SRR4302533.253965/1‑94 (MQ=60)

                                              CGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCG                                                 <  SRR4302533.1764299/94‑1 (MQ=60)

                                              CGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCG                                                 <  SRR4302533.5824427/94‑1 (MQ=60)

                                                CACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCA                                               >  SRR4302533.600444/1‑94 (MQ=60)

                                                 ACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAA                                              >  SRR4302533.1356656/1‑94 (MQ=60)

                                                   GCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAAT                                            >  SRR4302533.3837055/1‑94 (MQ=60)

                                                   GCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAAT                                            <  SRR4302533.3157158/94‑1 (MQ=60)

                                                   GCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAAT                                            <  SRR4302533.664993/94‑1 (MQ=60)

                                                    CAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATT                                           >  SRR4302533.5398287/1‑94 (MQ=60)

                                                      ATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTC                                         <  SRR4302533.2036883/94‑1 (MQ=60)

                                                       TGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCG                                        <  SRR4302533.6165235/94‑1 (MQ=60)

                                                       TGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCG                                        <  SRR4302533.5377794/94‑1 (MQ=60)

                                                        GAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGG                                       >  SRR4302533.2063972/1‑94 (MQ=60)

                                                           GTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAG                                    >  SRR4302533.2455069/1‑94 (MQ=60)

                                                           GTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAG                                    <  SRR4302533.5554778/94‑1 (MQ=60)

                                                           GTACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAG                                    >  SRR4302533.1278987/1‑94 (MQ=60)

                                                             ACAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCT                                  <  SRR4302533.829042/94‑1 (MQ=60)

                                                              CAGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTG                                 >  SRR4302533.2539677/1‑94 (MQ=60)

                                                               AGGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGG                                <  SRR4302533.3208504/94‑1 (MQ=60)

                                                                GGCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGC                               >  SRR4302533.1154551/1‑94 (MQ=60)

                                                                 GCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCG                              <  SRR4302533.4051925/94‑1 (MQ=60)

                                                                 GCAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCG                              >  SRR4302533.5002203/1‑94 (MQ=60)

                                                                 GCAAAGGCGGTACTTTACACGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCG                              <  SRR4302533.6110816/94‑1 (MQ=60)

                                                                  CAAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGT                             <  SRR4302533.4852580/94‑1 (MQ=60)

                                                                   AAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTT                            >  SRR4302533.2402089/1‑94 (MQ=60)

                                                                   AAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTT                            >  SRR4302533.3994775/1‑94 (MQ=60)

                                                                   AAAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTT                            >  SRR4302533.3818663/1‑94 (MQ=60)

                                                                    AAGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTG                           <  SRR4302533.4979279/94‑1 (MQ=60)

                                                                     AGGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGA                          >  SRR4302533.631397/1‑94 (MQ=60)

                                                                      GGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAG                         <  SRR4302533.5074739/94‑1 (MQ=60)

                                                                      GGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAG                         <  SRR4302533.2903385/94‑1 (MQ=60)

                                                                      GGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAG                         <  SRR4302533.4140788/94‑1 (MQ=60)

                                                                      GGCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAG                         <  SRR4302533.5930075/94‑1 (MQ=60)

                                                                       GCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGC                        >  SRR4302533.5146623/1‑94 (MQ=60)

                                                                       GCGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGC                        >  SRR4302533.2227593/1‑94 (MQ=60)

                                                                        CGGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCA                       >  SRR4302533.5291423/1‑94 (MQ=60)

                                                                         GGTACTTTACCCGGAATATGCCNAGNCCTTTGCTCGCNGTGGTACNCGCTTNTCNGTGGTCACNCCGCAANNNTNGGCAGNTNGCNTNNNGNAT                      >  SRR4302533.1821026/1‑94 (MQ=60)

                                                                         GGTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCAT                      <  SRR4302533.4571919/94‑1 (MQ=60)

                                                                          GTACTTTACCCGGAATATGCCCGGACCTTTGCTCGAGGTGGTCCGAGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATC                     >  SRR4302533.2835745/1‑94 (MQ=60)

                                                                          GTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATC                     <  SRR4302533.5037689/94‑1 (MQ=60)

                                                                          GTACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATC                     >  SRR4302533.2835746/1‑94 (MQ=60)

                                                                            ACTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTT                   >  SRR4302533.4891633/1‑94 (MQ=60)

                                                                             CTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTG                  <  SRR4302533.1533414/94‑1 (MQ=60)

                                                                             CTTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTG                  >  SRR4302533.2690957/1‑94 (MQ=60)

                                                                              TTTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGA                 >  SRR4302533.6312164/1‑94 (MQ=60)

                                                                               TTACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGAT                <  SRR4302533.3518521/94‑1 (MQ=60)

                                                                                TACCCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATA               >  SRR4302533.5041170/1‑94 (MQ=60)

                                                                                   CCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTA            >  SRR4302533.5913614/1‑94 (MQ=60)

                                                                                   CCGGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTA            >  SRR4302533.4198410/1‑94 (MQ=60)

                                                                                     GGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATC          >  SRR4302533.2732229/1‑94 (MQ=60)

                                                                                     GGAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATC          <  SRR4302533.5243364/94‑1 (MQ=60)

                                                                                      GAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCC         <  SRR4302533.459053/94‑1 (MQ=60)

                                                                                      GAATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCC         <  SRR4302533.3839210/94‑1 (MQ=60)

                                                                                        ATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTC       >  SRR4302533.1341594/1‑94 (MQ=60)

                                                                                        ATATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTC       <  SRR4302533.225723/94‑1 (MQ=60)

                                                                                         TATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCC      <  SRR4302533.6070434/94‑1 (MQ=60)

                                                                                         TATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCC      >  SRR4302533.3271341/1‑94 (MQ=60)

                                                                                         TATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCC      >  SRR4302533.1874740/1‑94 (MQ=60)

                                                                                          ATGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCCA     >  SRR4302533.5807117/1‑94 (MQ=60)

                                                                                           TGCCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCCAG    <  SRR4302533.3688255/94‑1 (MQ=60)

                                                                                             CCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCCAGCC  <  SRR4302533.2470925/94‑1 (MQ=60)

                                                                                             CCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCCAGCC  <  SRR4302533.2551329/94‑1 (MQ=60)

                                                                                             CCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCCAGCC  >  SRR4302533.2146911/1‑94 (MQ=60)

ATCTCGGTATTGATATCGGGCAAATCCAGACGCTGGATCTGATTACCGCACGCAATGAAGTACAGGCAAAGGCGGTACTTTACCCGGAATATGTCCAGACCTTTGCTCGCGGTGGTACGCGCTTCTCAGTGGTCACACCGCAAATTTCGGCAGCTGGCGTTGAGCATCTTGATACTATCCTCCAGCC  >  NC_000913/1917497‑1917683

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`