Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,923,720	T→C	V86A (GTT→GCT)	b1843 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,923,720	0	T	C	100.0%	658.4 / NA	203	V86A (GTT→GCT)	b1843	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (102/101); total (102/101)

Only 100 of 206 total aligned reads displayed.

CCCTTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGTTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCAT  >  NC_000913/1923630‑1923809

cccTTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTg                                                                                         >  2:1995477/1‑93 (MQ=255)

cccTTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTg                                                                                         >  1:3227714/1‑93 (MQ=255)

 ccTTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGa                                                                                        <  2:3183503/93‑1 (MQ=255)

  cTTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGaa                                                                                       <  2:1953461/93‑1 (MQ=255)

  cTTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGaa                                                                                       <  2:477180/93‑1 (MQ=255)

   ttCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAat                                                                                      <  2:4120451/93‑1 (MQ=255)

    tCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAata                                                                                     <  1:5208444/93‑1 (MQ=255)

    tCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAata                                                                                     <  2:3901473/93‑1 (MQ=255)

    tCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAata                                                                                     >  1:5492784/1‑93 (MQ=255)

      cTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAAtata                                                                                   >  2:5905266/1‑93 (MQ=255)

        gCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAAc                                                                                 <  1:5939655/93‑1 (MQ=255)

         ccccACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACg                                                                                <  1:238924/93‑1 (MQ=255)

          cccTCCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGa                                                                               <  1:1310078/93‑1 (MQ=255)

          cccACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGa                                                                               >  2:3268921/1‑93 (MQ=255)

           ccACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGAt                                                                              >  1:2240967/1‑93 (MQ=255)

           ccACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGAt                                                                              <  1:254326/93‑1 (MQ=255)

           ccACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGAt                                                                              >  1:4180495/1‑93 (MQ=255)

              cccGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGc                                                                           >  1:2435457/1‑93 (MQ=255)

              cccGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGc                                                                           >  1:4251461/1‑93 (MQ=255)

                  aTCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTa                                                                       >  1:958291/1‑93 (MQ=255)

                  aTCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTa                                                                       <  1:1921703/93‑1 (MQ=255)

                   tctctcACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTAt                                                                      <  1:3001952/93‑1 (MQ=255)

                    ctctcACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGTCCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTAtt                                                                     <  2:3435313/93‑1 (MQ=255)

                     cctcACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTc                                                                    <  1:3646905/92‑1 (MQ=255)

                       tcACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGt                                                                  >  2:734721/1‑93 (MQ=255)

                       tcACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGt                                                                  >  1:3873002/1‑93 (MQ=255)

                        cACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTg                                                                 >  1:3908278/1‑93 (MQ=255)

                        cACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTg                                                                 <  2:4958371/93‑1 (MQ=255)

                           tGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGaa                                                              >  1:5333257/1‑93 (MQ=255)

                           tGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGaa                                                              <  1:403200/93‑1 (MQ=255)

                           tGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGaa                                                              <  1:1035126/93‑1 (MQ=255)

                           tGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGaa                                                              >  1:3171414/1‑93 (MQ=255)

                            gTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAAt                                                             <  1:3370965/93‑1 (MQ=255)

                            gTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAAt                                                             <  1:6078949/93‑1 (MQ=255)

                              tAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTg                                                           <  2:3080268/93‑1 (MQ=255)

                              tAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCAACATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTg                                                           >  1:3551991/1‑93 (MQ=255)

                               aGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGc                                                          <  1:1123274/93‑1 (MQ=255)

                               aGACCCGCGTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCCGCTTTCCCGTTGAATATAACGCTGGCTTTATTCGTGGAATTGc                                                          <  2:5591776/93‑1 (MQ=255)

                                gACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCg                                                         >  2:5223745/1‑93 (MQ=255)

                                gACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCg                                                         >  2:1580948/1‑93 (MQ=255)

                                 gcccGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCgg                                                        <  1:1738003/92‑1 (MQ=255)

                                  cccGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGgt                                                       <  2:1342582/93‑1 (MQ=255)

                                  cccGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGgt                                                       >  1:1471694/1‑93 (MQ=255)

                                     gCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGtt                                                    <  2:1039561/93‑1 (MQ=255)

                                     gCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGtt                                                    >  2:2701918/1‑93 (MQ=255)

                                      cTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTc                                                   <  2:5346387/93‑1 (MQ=255)

                                      cTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTc                                                   >  2:5562872/1‑93 (MQ=255)

                                       tttGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCg                                                  <  1:508111/93‑1 (MQ=255)

                                       tttGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCg                                                  >  1:1882459/1‑93 (MQ=255)

                                       cttGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCg                                                  <  2:1030329/92‑1 (MQ=255)

                                         tGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCa                                                >  2:363270/1‑93 (MQ=255)

                                         tGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCa                                                >  2:247275/1‑93 (MQ=255)

                                         tGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCa                                                <  2:5177519/93‑1 (MQ=255)

                                          gTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCAc                                               >  2:2116708/1‑93 (MQ=255)

                                          gTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCAc                                               >  1:21433/1‑93 (MQ=255)

                                          gTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCAc                                               <  1:4666009/93‑1 (MQ=255)

                                              tGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTg                                           <  2:1601849/93‑1 (MQ=255)

                                              tGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTg                                           <  2:794180/93‑1 (MQ=255)

                                              tGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTg                                           <  1:4932805/93‑1 (MQ=255)

                                               gCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTgg                                          <  1:5891087/93‑1 (MQ=255)

                                                  gCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGa                                       <  2:4590555/93‑1 (MQ=255)

                                                    aaCGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGaaa                                     >  2:6193885/1‑93 (MQ=255)

                                                    aaCGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGaaa                                     >  1:2812045/1‑93 (MQ=255)

                                                    aaCGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGaaa                                     <  2:3222104/93‑1 (MQ=255)

                                                     aCGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGaaaa                                    <  2:3981327/93‑1 (MQ=255)

                                                      cGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGaaaaa                                   <  1:4583882/93‑1 (MQ=255)

                                                      cGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGaaaaa                                   >  1:5248946/1‑93 (MQ=255)

                                                       gACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAAc                                  >  2:1881973/1‑93 (MQ=255)

                                                        aCCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACg                                 >  1:3326746/1‑93 (MQ=255)

                                                          cTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGcc                               >  2:4631565/1‑93 (MQ=255)

                                                          cTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGcc                               <  2:2263581/93‑1 (MQ=255)

                                                          cTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGcc                               >  1:756494/1‑93 (MQ=255)

                                                          cTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGGTCGCACCGTGGCGAAAAACGcc                               >  1:3106002/1‑93 (MQ=255)

                                                            ggCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTg                             <  2:4023315/93‑1 (MQ=255)

                                                            ggCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTg                             >  1:4501365/1‑93 (MQ=255)

                                                            ggCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTg                             >  1:2934835/1‑93 (MQ=255)

                                                             gCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTgg                            >  1:1330782/1‑93 (MQ=255)

                                                              cGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTggg                           >  1:696714/1‑93 (MQ=255)

                                                               gAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGa                          >  2:3037555/1‑93 (MQ=255)

                                                               gAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGa                          <  1:5701867/93‑1 (MQ=255)

                                                                aaTGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGAt                         >  1:473171/1‑93 (MQ=255)

                                                                aaTGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGAt                         >  1:4314316/1‑93 (MQ=255)

                                                                aaTGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGAt                         <  2:2397013/93‑1 (MQ=255)

                                                                   gACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTa                      <  1:2621361/93‑1 (MQ=255)

                                                                        tcatTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATc                 <  2:4603181/93‑1 (MQ=255)

                                                                        tcatTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATc                 >  1:6283443/1‑93 (MQ=255)

                                                                        acatTTCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATc                 <  1:789755/92‑1 (MQ=255)

                                                                           ttGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTGGCACCGTGGCGAAAAACGCCTGGGATCTACAATCagg              >  1:1613803/1‑92 (MQ=255)

                                                                              ccGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTc           >  1:2170736/1‑93 (MQ=255)

                                                                                ggCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCTCCGTGGCGAAAAACGCCTGTGATCTACCATCAGAGTCAt         <  2:2770337/93‑1 (MQ=255)

                                                                                  ccTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATgg       >  2:1132729/1‑93 (MQ=255)

                                                                                   cTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGt      <  1:904628/93‑1 (MQ=255)

                                                                                    ttCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTg     >  1:2301981/1‑93 (MQ=255)

                                                                                    ttCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTg     >  2:5803653/1‑93 (MQ=255)

                                                                                    ttCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTg     >  2:4174936/1‑93 (MQ=255)

                                                                                     tCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGc    >  1:6108714/1‑93 (MQ=255)

                                                                                     tCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGc    <  1:3976802/93‑1 (MQ=255)

                                                                                     tCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGc    >  2:2538913/1‑93 (MQ=255)

                                                                                     tCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGc    <  1:4593131/93‑1 (MQ=255)

                                                                                      cccGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCa   >  2:5252898/1‑93 (MQ=255)

CCCTTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGTTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCAT  >  NC_000913/1923630‑1923809

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGCCCTTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGTTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCATGTCT  >  NC_000913/1923628‑1923813

TGCCCTTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCT                                                                                              <  SRR4302533.5055692/94‑1 (MQ=60)

TGCCCTTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCT                                                                                              <  SRR4302533.2290802/94‑1 (MQ=60)

 GCCCTTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTG                                                                                             >  SRR4302533.3247612/1‑94 (MQ=60)

 GCCCTTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTG                                                                                             <  SRR4302533.5532022/94‑1 (MQ=60)

   CCTTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAA                                                                                           >  SRR4302533.1042845/1‑94 (MQ=60)

   CCTTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAA                                                                                           >  SRR4302533.4256038/1‑94 (MQ=60)

   CCTTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAA                                                                                           >  SRR4302533.2387855/1‑94 (MQ=60)

     TTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATA                                                                                         >  SRR4302533.5525916/1‑94 (MQ=60)

     TTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATA                                                                                         >  SRR4302533.6269410/1‑94 (MQ=60)

      TCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATAT                                                                                        >  SRR4302533.288448/1‑94 (MQ=60)

      TCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATAT                                                                                        <  SRR4302533.5239820/94‑1 (MQ=60)

         TGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTTGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAAC                                                                                     <  SRR4302533.743573/94‑1 (MQ=60)

         TGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAAC                                                                                     <  SRR4302533.5657653/94‑1 (MQ=60)

         TGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAAC                                                                                     <  SRR4302533.132686/94‑1 (MQ=60)

          GCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACG                                                                                    <  SRR4302533.5975568/94‑1 (MQ=60)

           CCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGA                                                                                   >  SRR4302533.4846020/1‑94 (MQ=60)

           CCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGA                                                                                   <  SRR4302533.240403/94‑1 (MQ=60)

            CGCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGAT                                                                                  >  SRR4302533.5979878/1‑94 (MQ=60)

            CCCTCCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGAT                                                                                  <  SRR4302533.1317943/94‑1 (MQ=60)

            CCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGAT                                                                                  >  SRR4302533.4205814/1‑94 (MQ=60)

            CCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGAT                                                                                  >  SRR4302533.2254818/1‑94 (MQ=60)

             CCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATC                                                                                 <  SRR4302533.255885/94‑1 (MQ=60)

             CCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATC                                                                                 >  SRR4302533.3240268/1‑94 (MQ=60)

               ACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGC                                                                               >  SRR4302533.2450499/1‑94 (MQ=60)

               ACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGC                                                                               >  SRR4302533.4277108/1‑94 (MQ=60)

                   GATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTA                                                                           >  SRR4302533.5845417/1‑94 (MQ=60)

                   GATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTA                                                                           >  SRR4302533.963926/1‑94 (MQ=60)

                    ATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTAT                                                                          <  SRR4302533.1933432/94‑1 (MQ=60)

                    ATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTAT                                                                          >  SRR4302533.919655/1‑94 (MQ=60)

                     TCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATT                                                                         <  SRR4302533.3020310/94‑1 (MQ=60)

                       TCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCG                                                                       <  SRR4302533.5965340/94‑1 (MQ=60)

                       CCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCG                                                                       <  SRR4302533.3669327/94‑1 (MQ=60)

                        CTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGT                                                                      >  SRR4302533.3896641/1‑94 (MQ=60)

                        CTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGT                                                                      >  SRR4302533.202621/1‑94 (MQ=60)

                        CTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGT                                                                      <  SRR4302533.3896772/94‑1 (MQ=60)

                         TCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTG                                                                     >  SRR4302533.3932147/1‑94 (MQ=60)

                           ACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGA                                                                   >  SRR4302533.2459328/1‑94 (MQ=60)

                            CTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAA                                                                  >  SRR4302533.5365221/1‑94 (MQ=60)

                            CTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAA                                                                  >  SRR4302533.3190934/1‑94 (MQ=60)

                            CTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAA                                                                  <  SRR4302533.2173226/94‑1 (MQ=60)

                             TGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAAT                                                                 <  SRR4302533.1041214/94‑1 (MQ=60)

                             TGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAAT                                                                 <  SRR4302533.405628/94‑1 (MQ=60)

                              GTTAGGCCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATT                                                                <  SRR4302533.3012782/94‑1 (MQ=60)

                              GTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATT                                                                <  SRR4302533.3391783/94‑1 (MQ=60)

                              GTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATT                                                                <  SRR4302533.6115715/94‑1 (MQ=60)

                              GTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATT                                                                >  SRR4302533.1469059/1‑94 (MQ=60)

                               TTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCAACATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTG                                                               >  SRR4302533.3573871/1‑94 (MQ=60)

                                 AGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCG                                                             <  SRR4302533.1129939/94‑1 (MQ=60)

                                  GACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGG                                                            >  SRR4302533.5434076/1‑94 (MQ=60)

                                   GCCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGT                                                           <  SRR4302533.1748548/94‑1 (MQ=60)

                                   ACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGT                                                           >  SRR4302533.1480589/1‑94 (MQ=60)

                                    CCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTG                                                          <  SRR4302533.671058/94‑1 (MQ=60)

                                     CCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGT                                                         <  SRR4302533.4459239/94‑1 (MQ=60)

                                      CGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTT                                                        <  SRR4302533.997753/94‑1 (MQ=60)

                                        CTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCG                                                      >  SRR4302533.1893920/1‑94 (MQ=60)

                                        CTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCG                                                      <  SRR4302533.2764998/94‑1 (MQ=60)

                                         TTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCTGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGC                                                     <  SRR4302533.3167324/94‑1 (MQ=60)

                                         TTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGC                                                     <  SRR4302533.511128/94‑1 (MQ=60)

                                           TGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCAC                                                   >  SRR4302533.21575/1‑94 (MQ=60)

                                           TGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCAC                                                   >  SRR4302533.5144786/1‑94 (MQ=60)

                                           TGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCAC                                                   >  SRR4302533.4669244/1‑94 (MQ=60)

                                            GTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATCACGATCGCTTTATTCGTGGAATTGCGGTGGTCGCACC                                                  >  SRR4302533.114778/1‑94 (MQ=60)

                                            GTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACC                                                  <  SRR4302533.4694278/94‑1 (MQ=60)

                                              TATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGT                                                <  SRR4302533.2730434/94‑1 (MQ=60)

                                              TATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGT                                                >  SRR4302533.765319/1‑94 (MQ=60)

                                               ATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTG                                               <  SRR4302533.906861/94‑1 (MQ=60)

                                                TGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGG                                              >  SRR4302533.534274/1‑94 (MQ=60)

                                                TGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGG                                              <  SRR4302533.4962675/94‑1 (MQ=60)

                                                TGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGG                                              >  SRR4302533.4617981/1‑94 (MQ=60)

                                                 GCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGC                                             <  SRR4302533.5926673/94‑1 (MQ=60)

                                                 GCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGC                                             <  SRR4302533.1637343/94‑1 (MQ=60)

                                                     CAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAA                                         >  SRR4302533.4019080/1‑94 (MQ=60)

                                                     CAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAA                                         >  SRR4302533.2829351/1‑94 (MQ=60)

                                                       ACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAA                                       >  SRR4302533.5280495/1‑94 (MQ=60)

                                                        CGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAAC                                      <  SRR4302533.4611652/94‑1 (MQ=60)

                                                         GACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACG                                     <  SRR4302533.3086357/94‑1 (MQ=60)

                                                         GACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACG                                     >  SRR4302533.3347301/1‑94 (MQ=60)

                                                          ACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGC                                    <  SRR4302533.2424981/94‑1 (MQ=60)

                                                           CCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCC                                   >  SRR4302533.760945/1‑94 (MQ=60)

                                                           CCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCC                                   >  SRR4302533.5085263/1‑94 (MQ=60)

                                                           CCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGGTCGCACCGTGGCGAAAAACGCC                                   >  SRR4302533.3125093/1‑94 (MQ=60)

                                                            CTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCT                                  <  SRR4302533.3574389/94‑1 (MQ=60)

                                                            CTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCT                                  >  SRR4302533.4730541/1‑94 (MQ=60)

                                                            CTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCT                                  <  SRR4302533.4283649/94‑1 (MQ=60)

                                                             TGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTG                                 >  SRR4302533.4528633/1‑94 (MQ=60)

                                                             TGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTG                                 >  SRR4302533.2952779/1‑94 (MQ=60)

                                                             TGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTG                                 <  SRR4302533.1915148/94‑1 (MQ=60)

                                                             TGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTG                                 >  SRR4302533.1603790/1‑94 (MQ=60)

                                                             TGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTG                                 <  SRR4302533.4500675/94‑1 (MQ=60)

                                                              GGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGG                                >  SRR4302533.1338766/1‑94 (MQ=60)

                                                               GCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGG                               >  SRR4302533.700835/1‑94 (MQ=60)

                                                               GCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGG                               <  SRR4302533.4172181/94‑1 (MQ=60)

                                                                CGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGA                              <  SRR4302533.3478726/94‑1 (MQ=60)

                                                                 GAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGAT                             >  SRR4302533.476000/1‑94 (MQ=60)

                                                                 GAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGAT                             >  SRR4302533.4340291/1‑94 (MQ=60)

                                                                 GAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGAT                             <  SRR4302533.5736299/94‑1 (MQ=60)

                                                                   ATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCT                           <  SRR4302533.6141126/94‑1 (MQ=60)

                                                                     GACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTAC                         >  SRR4302533.459187/1‑94 (MQ=60)

                                                                     GACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTAC                         <  SRR4302533.2637449/94‑1 (MQ=60)

                                                                      ACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACC                        <  SRR4302533.5276677/94‑1 (MQ=60)

                                                                        CATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCAT                      <  SRR4302533.1869320/94‑1 (MQ=60)

                                                                         ATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGTAAAACGCCTGGGATCTACCATA                     >  SRR4302533.2293929/1‑94 (MQ=60)

                                                                         ATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATC                     >  SRR4302533.6320938/1‑94 (MQ=60)

                                                                         ATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATC                     >  SRR4302533.3368811/1‑94 (MQ=60)

                                                                          ACATTTCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCA                    <  SRR4302533.794404/94‑1 (MQ=60)

                                                                           CATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAG                   >  SRR4302533.3701856/1‑94 (MQ=60)

                                                                            ATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTGGCACCGTGGCGAAAAACGCCTGGGATCTACAATCAGG                  >  SRR4302533.1623583/1‑94 (MQ=60)

                                                                               GCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTC               >  SRR4302533.2184086/1‑94 (MQ=60)

                                                                                CCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCA              <  SRR4302533.6306373/94‑1 (MQ=60)

                                                                                 CGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCAT             >  SRR4302533.2209302/1‑94 (MQ=60)

                                                                                     CTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTG         <  SRR4302533.2633896/94‑1 (MQ=60)

                                                                                     CTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTG         >  SRR4302533.3994062/1‑94 (MQ=60)

                                                                                     CTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTG         <  SRR4302533.909931/94‑1 (MQ=60)

                                                                                     CTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTG         >  SRR4302533.3250346/1‑94 (MQ=60)

                                                                                     CTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTG         >  SRR4302533.2316244/1‑94 (MQ=60)

                                                                                      TTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGC        >  SRR4302533.6145593/1‑94 (MQ=60)

                                                                                       TCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCA       <  SRR4302533.4620954/94‑1 (MQ=60)

                                                                                       TCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCA       <  SRR4302533.4001014/94‑1 (MQ=60)

                                                                                         CCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCATG     >  SRR4302533.861249/1‑94 (MQ=60)

                                                                                         CCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCATG     >  SRR4302533.5562998/1‑94 (MQ=60)

                                                                                         CCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCATG     >  SRR4302533.5563000/1‑94 (MQ=60)

                                                                                         CCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGCTGCATG     >  SRR4302533.4000272/1‑94 (MQ=60)

                                                                                          CGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCATGT    <  SRR4302533.2386325/94‑1 (MQ=60)

                                                                                          CGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCATGT    <  SRR4302533.1232175/94‑1 (MQ=60)

                                                                                           GCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCATGTC   >  SRR4302533.2375980/1‑94 (MQ=60)

                                                                                           GCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCATGTC   >  SRR4302533.1450350/1‑94 (MQ=60)

                                                                                           GCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCATGTC   >  SRR4302533.4567202/1‑94 (MQ=60)

                                                                                            CTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCATGTCT  >  SRR4302533.5439557/1‑94 (MQ=60)

TGCCCTTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGTTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCATGTCT  >  NC_000913/1923628‑1923813

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`