Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,924,185 A→G G14G (GGA→GGG)  b1844 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,924,1850AG100.0% 539.8 / NA 170G14G (GGA→GGG) b1844hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (79/91);  total (79/91)

Only 100 of 192 total aligned reads displayed.

AAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGAGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAG  >  NC_000913/1924095‑1924274
                                                                                          |                                                                                         
aaGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCagggggg                                                                                         <  1:1055570/93‑1 (MQ=255)
aaGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCagggggg                                                                                         >  1:3309593/1‑93 (MQ=255)
 aGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCaggggggg                                                                                        <  2:3076717/93‑1 (MQ=255)
  ggCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAggggggga                                                                                       <  2:4589093/93‑1 (MQ=255)
  ggCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAggggggga                                                                                       >  1:5653880/1‑93 (MQ=255)
   gCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGAt                                                                                      <  2:5567832/93‑1 (MQ=255)
    cGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATc                                                                                     <  2:3160258/93‑1 (MQ=255)
     gATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGGTCg                                                                                    >  1:722904/1‑93 (MQ=255)
     gATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCg                                                                                    >  1:1520492/1‑93 (MQ=255)
     gATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGCTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCg                                                                                    >  1:6264345/1‑93 (MQ=255)
      atatCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGt                                                                                   <  1:1653564/93‑1 (MQ=255)
      atatCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGt                                                                                   >  2:1270647/1‑93 (MQ=255)
      atatCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGt                                                                                   >  1:1769155/1‑93 (MQ=255)
      atatCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGt                                                                                   <  1:3862696/93‑1 (MQ=255)
       tatCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGtt                                                                                  >  2:954315/1‑93 (MQ=255)
       tatCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGtt                                                                                  <  2:5771076/93‑1 (MQ=255)
       tatCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGtt                                                                                  <  2:3563163/93‑1 (MQ=255)
        atCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTg                                                                                 >  1:61098/1‑93 (MQ=255)
         tCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTga                                                                                >  2:1883679/1‑93 (MQ=255)
         tCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTga                                                                                >  2:4421189/1‑93 (MQ=255)
          cATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTgag                                                                               >  2:3871818/1‑93 (MQ=255)
          cATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTgag                                                                               >  2:5698923/1‑93 (MQ=255)
            ttCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGAt                                                                             >  1:1729486/1‑93 (MQ=255)
              ccATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTg                                                                           >  1:2667225/1‑93 (MQ=255)
              ccATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTg                                                                           >  2:6267163/1‑93 (MQ=255)
               cATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGc                                                                          <  2:1494739/93‑1 (MQ=255)
                aTTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGcc                                                                         >  2:3327882/1‑93 (MQ=255)
                aTTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGcc                                                                         >  1:1344841/1‑93 (MQ=255)
                  tACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCctc                                                                       <  1:1063123/93‑1 (MQ=255)
                  tACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCctc                                                                       >  1:5313918/1‑93 (MQ=255)
                   aCGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCctct                                                                      >  1:1134224/1‑93 (MQ=255)
                   aCGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCctct                                                                      <  1:5403581/93‑1 (MQ=255)
                     gCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGt                                                                    >  1:3562616/1‑93 (MQ=255)
                      cTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGtt                                                                   <  1:2437149/93‑1 (MQ=255)
                       tAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTg                                                                  >  2:2747048/1‑93 (MQ=255)
                         ggCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGAt                                                                <  1:2001422/93‑1 (MQ=255)
                          gCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATATAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATg                                                               >  1:3389071/1‑93 (MQ=255)
                          gCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATg                                                               >  1:2091040/1‑93 (MQ=255)
                           cTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGt                                                              <  2:3709348/93‑1 (MQ=255)
                            tttttCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTc                                                             >  2:3944975/1‑93 (MQ=255)
                             ttttCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCa                                                            <  1:4256759/93‑1 (MQ=255)
                              tttCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCAt                                                           >  1:598725/1‑93 (MQ=255)
                              tttCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCAt                                                           >  1:4933817/1‑93 (MQ=255)
                               ttCGGCTTGGCGCATGCCATGTTGCGCTTTATCGATACAGAAGCCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCAtt                                                          <  2:3770748/93‑1 (MQ=255)
                               ttCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCAtt                                                          <  2:2590208/93‑1 (MQ=255)
                                   gCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACg                                                      <  2:3496940/93‑1 (MQ=255)
                                   gCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACg                                                      >  2:3791603/1‑93 (MQ=255)
                                       ggAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGaaa                                                  >  1:3247019/1‑93 (MQ=255)
                                         aGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGaaaaa                                                <  2:229629/93‑1 (MQ=255)
                                          gCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAAt                                               <  1:3888820/93‑1 (MQ=255)
                                          gCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAAt                                               >  1:3076994/1‑93 (MQ=255)
                                           cATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATc                                              <  1:5025245/93‑1 (MQ=255)
                                           cATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATc                                              >  1:5821477/1‑93 (MQ=255)
                                           cATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATc                                              <  1:1501850/93‑1 (MQ=255)
                                           cATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATc                                              <  1:6141499/93‑1 (MQ=255)
                                            aTGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCg                                             <  1:2460621/93‑1 (MQ=255)
                                            aTGCCATGTTGCCCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCg                                             >  2:2066495/1‑93 (MQ=255)
                                             tGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGt                                            >  2:6079265/1‑93 (MQ=255)
                                                 aTGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAc                                        >  1:2185781/1‑93 (MQ=255)
                                                  tGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAcc                                       <  1:4121346/93‑1 (MQ=255)
                                                  tGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAcc                                       >  1:4452702/1‑93 (MQ=255)
                                                    ttGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAcccc                                     <  1:432988/93‑1 (MQ=255)
                                                        gcATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGa                                 <  2:4049980/93‑1 (MQ=255)
                                                           ttATGGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGcc                              <  1:457425/93‑1 (MQ=255)
                                                           ttATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGcc                              <  1:3098304/93‑1 (MQ=255)
                                                           ttATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGcc                              >  1:3765143/1‑93 (MQ=255)
                                                           ttATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGCAAAAATCGTCAACCCCATGAGcc                              <  2:4347036/93‑1 (MQ=255)
                                                            tATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCa                             <  1:4016309/93‑1 (MQ=255)
                                                            tATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCa                             >  1:1759910/1‑93 (MQ=255)
                                                              tCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCAcc                           <  2:3128545/93‑1 (MQ=255)
                                                              tCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCAcc                           <  2:2397536/93‑1 (MQ=255)
                                                               cGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCt                          <  1:1906906/93‑1 (MQ=255)
                                                                 aTACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTgg                        >  1:5903685/1‑93 (MQ=255)
                                                                 aTACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTgg                        <  1:683141/93‑1 (MQ=255)
                                                                  tACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGt                       <  1:256149/93‑1 (MQ=255)
                                                                    cAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTgc                     <  1:2963437/93‑1 (MQ=255)
                                                                    cAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTgc                     <  2:5415740/93‑1 (MQ=255)
                                                                      gAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTgcgc                   >  2:5035853/1‑93 (MQ=255)
                                                                       aaaCCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGcc                  >  2:5810399/1‑93 (MQ=255)
                                                                       aaaCCTGCGGTTTGCAGGGGGGGATCGGTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGcc                  <  1:1084490/93‑1 (MQ=255)
                                                                        acccTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGccc                 <  1:189827/91‑1 (MQ=255)
                                                                        aaCCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGccc                 <  1:1883438/93‑1 (MQ=255)
                                                                         aCCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGcccc                <  1:1271618/93‑1 (MQ=255)
                                                                           cTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGa              <  2:3381378/93‑1 (MQ=255)
                                                                            tGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGAt             <  2:677089/93‑1 (MQ=255)
                                                                            tGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGAt             <  1:6238041/93‑1 (MQ=255)
                                                                               ggTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGt          <  1:1021274/93‑1 (MQ=255)
                                                                                gTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTc         >  2:702499/1‑93 (MQ=255)
                                                                                 tttGCAGGGGGGGATCGTTGAGATTGCGTCTGTTGATGTCATTGACGGAAAAATCGTCACCCCCATGAGCCACCTGGTGCGGCCCGATCGTcc        <  2:5141941/93‑1 (MQ=255)
                                                                                 tttGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTcc        <  2:4652833/93‑1 (MQ=255)
                                                                                   tGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCACCCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTa      <  2:1747105/93‑1 (MQ=255)
                                                                                   tGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTa      <  2:4439362/93‑1 (MQ=255)
                                                                                    gCAGGGGGGGTTCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTAt     <  2:4833147/93‑1 (MQ=255)
                                                                                    gCAGGGGGGGATCGTTGAGATTCCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTAt     <  2:1952599/93‑1 (MQ=255)
                                                                                     cAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCACCCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTAtt    <  2:4226694/93‑1 (MQ=255)
                                                                                     cAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTAtt    <  1:314755/93‑1 (MQ=255)
                                                                                     cAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTAtt    <  2:986331/93‑1 (MQ=255)
                                                                                       gggggggaTCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAg  <  2:3417393/93‑1 (MQ=255)
                                                                                       gggggggaTCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAg  >  1:6077550/1‑93 (MQ=255)
                                                                                       gggggggaTCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAg  >  1:1386969/1‑93 (MQ=255)
                                                                                          |                                                                                         
AAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGAGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAG  >  NC_000913/1924095‑1924274

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GGCAAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGAGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAGTCCA  >  NC_000913/1924092‑1924278
                                                                                             |                                                                                             
GGCAAGGCGATATCTTTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGG                                                                                               <  SRR4302533.2087837/94‑1 (MQ=60)
GGCAAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGG                                                                                               >  SRR4302533.4704391/1‑94 (MQ=60)
GGCAAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGG                                                                                               <  SRR4302533.3639834/94‑1 (MQ=60)
 GCAAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGG                                                                                              <  SRR4302533.690648/94‑1 (MQ=60)
 GCAAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGG                                                                                              <  SRR4302533.4537279/94‑1 (MQ=60)
 GCAAGGCGATATCATGCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGG                                                                                              <  SRR4302533.3636677/94‑1 (MQ=60)
  CAAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGG                                                                                             >  SRR4302533.3330030/1‑94 (MQ=60)
   AAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGG                                                                                            <  SRR4302533.1061778/94‑1 (MQ=60)
   AAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGACCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGG                                                                                            >  SRR4302533.4370077/1‑94 (MQ=60)
    AGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGA                                                                                           >  SRR4302533.5688052/1‑94 (MQ=60)
    AGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGA                                                                                           <  SRR4302533.3318286/94‑1 (MQ=60)
     GGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGAT                                                                                          <  SRR4302533.2499553/94‑1 (MQ=60)
      GCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATC                                                                                         <  SRR4302533.2313567/94‑1 (MQ=60)
       CGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGGTCG                                                                                        >  SRR4302533.727180/1‑94 (MQ=60)
       CGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCG                                                                                        >  SRR4302533.1529646/1‑94 (MQ=60)
       CGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGCTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCG                                                                                        >  SRR4302533.6301786/1‑94 (MQ=60)
        GATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGT                                                                                       >  SRR4302533.1779927/1‑94 (MQ=60)
         ATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTT                                                                                      <  SRR4302533.3886271/94‑1 (MQ=60)
         ATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTT                                                                                      >  SRR4302533.3936086/1‑94 (MQ=60)
         ATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTT                                                                                      <  SRR4302533.1663578/94‑1 (MQ=60)
         ATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTT                                                                                      >  SRR4302533.5962476/1‑94 (MQ=60)
         ATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTT                                                                                      <  SRR4302533.5858773/94‑1 (MQ=60)
          TATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTG                                                                                     >  SRR4302533.61500/1‑94 (MQ=60)
           ATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGA                                                                                    <  SRR4302533.6125702/94‑1 (MQ=60)
           ATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGA                                                                                    >  SRR4302533.1896567/1‑94 (MQ=60)
           ATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGATTTGCAGGGGGGGATCGTTGA                                                                                    >  SRR4302533.127040/1‑94 (MQ=60)
            TCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAG                                                                                   <  SRR4302533.1133397/94‑1 (MQ=60)
            TCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAG                                                                                   <  SRR4302533.5346849/94‑1 (MQ=60)
              ATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGAT                                                                                 >  SRR4302533.1739971/1‑94 (MQ=60)
               TTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATT                                                                                <  SRR4302533.4976053/94‑1 (MQ=60)
                TCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTG                                                                               >  SRR4302533.2683590/1‑94 (MQ=60)
                 CCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGC                                                                              >  SRR4302533.2469001/1‑94 (MQ=60)
                  CATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCC                                                                             >  SRR4302533.1352933/1‑94 (MQ=60)
                    TTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTC                                                                           >  SRR4302533.5345761/1‑94 (MQ=60)
                     TACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCT                                                                          <  SRR4302533.1069371/94‑1 (MQ=60)
                     TACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCT                                                                          >  SRR4302533.1140967/1‑94 (MQ=60)
                      ACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTG                                                                         <  SRR4302533.1389298/94‑1 (MQ=60)
                      ACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTG                                                                         <  SRR4302533.5436052/94‑1 (MQ=60)
                       CGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGT                                                                        >  SRR4302533.3584566/1‑94 (MQ=60)
                         CTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTG                                                                      <  SRR4302533.2452196/94‑1 (MQ=60)
                         CTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTG                                                                      <  SRR4302533.4635509/94‑1 (MQ=60)
                         CTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTG                                                                      >  SRR4302533.6232124/1‑94 (MQ=60)
                          TAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGA                                                                     >  SRR4302533.4227346/1‑94 (MQ=60)
                            GGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATATAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATG                                                                   >  SRR4302533.3409999/1‑94 (MQ=60)
                            GGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATG                                                                   <  SRR4302533.2013746/94‑1 (MQ=60)
                            GGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATG                                                                   >  SRR4302533.2103919/1‑94 (MQ=60)
                               TTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCA                                                                >  SRR4302533.2897233/1‑94 (MQ=60)
                                TTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCAT                                                               >  SRR4302533.602250/1‑94 (MQ=60)
                                TTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCAT                                                               <  SRR4302533.4282424/94‑1 (MQ=60)
                                TTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCAT                                                               >  SRR4302533.4963694/1‑94 (MQ=60)
                                       CCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGA                                                        >  SRR4302533.4558705/1‑94 (MQ=60)
                                       CCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGA                                                        >  SRR4302533.3835135/1‑94 (MQ=60)
                                         TGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAA                                                      >  SRR4302533.2660743/1‑94 (MQ=60)
                                         TGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAA                                                      >  SRR4302533.3267043/1‑94 (MQ=60)
                                            AGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAAT                                                   >  SRR4302533.3095878/1‑94 (MQ=60)
                                             GCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATC                                                  >  SRR4302533.5856640/1‑94 (MQ=60)
                                             GCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATC                                                  <  SRR4302533.3912547/94‑1 (MQ=60)
                                              CATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCG                                                 <  SRR4302533.6178487/94‑1 (MQ=60)
                                              CATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCG                                                 <  SRR4302533.1510904/94‑1 (MQ=60)
                                              CATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCG                                                 <  SRR4302533.5055673/94‑1 (MQ=60)
                                               ATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGT                                                >  SRR4302533.802792/1‑94 (MQ=60)
                                               ATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGT                                                <  SRR4302533.2475806/94‑1 (MQ=60)
                                               ATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGT                                                >  SRR4302533.3384505/1‑94 (MQ=60)
                                                TGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTC                                               <  SRR4302533.1665847/94‑1 (MQ=60)
                                                TGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTC                                               <  SRR4302533.3432073/94‑1 (MQ=60)
                                                TGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTC                                               >  SRR4302533.640628/1‑94 (MQ=60)
                                                TGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATAGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTC                                               >  SRR4302533.1918347/1‑94 (MQ=60)
                                                 GCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCA                                              <  SRR4302533.6278218/94‑1 (MQ=60)
                                                   CATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGGTCGTTGAGAGTGCCTCTGTTGATGTTATTAACGGAAAAATCGTCAAC                                            >  SRR4302533.3119916/1‑94 (MQ=60)
                                                   CATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAC                                            >  SRR4302533.2199254/1‑94 (MQ=60)
                                                   CATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAC                                            >  SRR4302533.1419988/1‑94 (MQ=60)
                                                    ATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACC                                           >  SRR4302533.6091751/1‑94 (MQ=60)
                                                    ATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACC                                           >  SRR4302533.4479624/1‑94 (MQ=60)
                                                     TGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCC                                          <  SRR4302533.4146369/94‑1 (MQ=60)
                                                       TTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCA                                        <  SRR4302533.701545/94‑1 (MQ=60)
                                                       TTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCA                                        <  SRR4302533.435568/94‑1 (MQ=60)
                                                             ATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCC                                  >  SRR4302533.3788222/1‑94 (MQ=60)
                                                             ATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCC                                  >  SRR4302533.109033/1‑94 (MQ=60)
                                                              TTATGGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCA                                 <  SRR4302533.460161/94‑1 (MQ=60)
                                                              TTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCA                                 >  SRR4302533.1770636/1‑94 (MQ=60)
                                                              TTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCA                                 >  SRR4302533.572670/1‑94 (MQ=60)
                                                              TTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCA                                 <  SRR4302533.3117352/94‑1 (MQ=60)
                                                               TATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCAC                                <  SRR4302533.4040761/94‑1 (MQ=60)
                                                                ATCGATACAGAAACCTGCGGTGTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACC                               <  SRR4302533.3258828/94‑1 (MQ=60)
                                                                  CGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTG                             <  SRR4302533.1918538/94‑1 (MQ=60)
                                                                  CGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGGTGAGATTGCCTCTGCTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTG                             >  SRR4302533.1522782/1‑94 (MQ=60)
                                                                   GATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGG                            >  SRR4302533.5939340/1‑94 (MQ=60)
                                                                    ATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGT                           <  SRR4302533.687181/94‑1 (MQ=60)
                                                                     TACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTG                          <  SRR4302533.257713/94‑1 (MQ=60)
                                                                       CAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCG                        <  SRR4302533.2981555/94‑1 (MQ=60)
                                                                          AAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCC                     <  SRR4302533.559173/94‑1 (MQ=60)
                                                                          AAACCTGCGGTTTGCAGGGGGGGATCGGTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCC                     <  SRR4302533.1090886/94‑1 (MQ=60)
                                                                           ACCCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCC                    <  SRR4302533.191013/94‑1 (MQ=60)
                                                                           AACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCC                    <  SRR4302533.1894939/94‑1 (MQ=60)
                                                                            ACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCG                   <  SRR4302533.1279225/94‑1 (MQ=60)
                                                                              CTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGAT                 >  SRR4302533.1750851/1‑94 (MQ=60)
                                                                               TGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATC                <  SRR4302533.1306051/94‑1 (MQ=60)
                                                                               TGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATC                <  SRR4302533.5290942/94‑1 (MQ=60)
                                                                               TGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATC                <  SRR4302533.6275394/94‑1 (MQ=60)
                                                                               TGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATC                <  SRR4302533.3031366/94‑1 (MQ=60)
                                                                                GCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCG               <  SRR4302533.203958/94‑1 (MQ=60)
                                                                                GCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCG               <  SRR4302533.159359/94‑1 (MQ=60)
                                                                                  GGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTC             <  SRR4302533.1027275/94‑1 (MQ=60)
                                                                                   GTTTGCAGGTGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCC            <  SRR4302533.2117520/94‑1 (MQ=60)
                                                                                   GTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCC            <  SRR4302533.1822523/94‑1 (MQ=60)
                                                                                    TTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCT           <  SRR4302533.3904343/94‑1 (MQ=60)
                                                                                     TTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTA          <  SRR4302533.4122701/94‑1 (MQ=60)
                                                                                      TGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTAT         <  SRR4302533.3684201/94‑1 (MQ=60)
                                                                                       GCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATT        <  SRR4302533.1925526/94‑1 (MQ=60)
                                                                                        CAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTA       <  SRR4302533.316677/94‑1 (MQ=60)
                                                                                         AGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAG      >  SRR4302533.1066323/1‑94 (MQ=60)
                                                                                         AGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAG      >  SRR4302533.6114308/1‑94 (MQ=60)
                                                                                         AGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAG      >  SRR4302533.1395317/1‑94 (MQ=60)
                                                                                          GGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAGT     >  SRR4302533.5799134/1‑94 (MQ=60)
                                                                                             GGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAGTCCA  >  SRR4302533.3140886/1‑94 (MQ=60)
                                                                                             |                                                                                             
GGCAAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGAGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAGTCCA  >  NC_000913/1924092‑1924278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑