Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,980,940 |
+C |
coding (1/363 nt)
coding (627/627 nt) |
araH ←
araH ← |
ABC‑type arabinose transport system permease component
ABC‑type arabinose transport system permease component |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,980,939 | 1 | . | C | 99.5%
| 588.1
/ ‑3.8
| 187 | coding (2/363 nt) | araH | ABC‑type arabinose transport system permease component |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (111/75); total (111/76) |
| Fisher's exact test for biased strand distribution p-value = 4.06e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 208 total aligned reads displayed.
CCAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGT > NC_000913/1980847‑1981026
|
ccAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCg‑g < 2:82279/93‑1 (MQ=255)
cAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑c > 2:972131/1‑93 (MQ=255)
cAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑c > 2:3473554/1‑93 (MQ=255)
aGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑cc > 2:2433533/1‑92 (MQ=255)
aGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑cc > 1:3059079/1‑92 (MQ=255)
gAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑cct > 1:3952758/1‑91 (MQ=255)
aataatTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑cctc > 2:3995672/1‑90 (MQ=255)
aataatTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑cctc < 1:5770102/93‑4 (MQ=255)
aataatTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑cctc > 2:3255584/1‑90 (MQ=255)
ataatTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑cctct < 2:3906981/93‑5 (MQ=255)
atTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCg > 2:190307/1‑93 (MQ=255)
atTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCg > 1:34346/1‑93 (MQ=255)
atTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCg > 2:3602312/1‑93 (MQ=255)
ttCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGt < 2:6158624/93‑1 (MQ=255)
cGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTcc < 2:4767977/93‑1 (MQ=255)
cGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTcc < 1:5787666/93‑1 (MQ=255)
cTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGc < 1:5060226/93‑1 (MQ=255)
tATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTGGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGcc < 2:802097/93‑1 (MQ=255)
tCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCaa > 1:5128278/1‑93 (MQ=255)
cGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACCCCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAAt < 1:2906115/93‑1 (MQ=255)
cGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAAt < 2:4325264/93‑1 (MQ=255)
cTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCg > 2:287399/1‑93 (MQ=255)
tGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGc < 2:2757710/93‑1 (MQ=255)
tGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGc > 2:1002972/1‑93 (MQ=255)
gATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGcc > 1:3023466/1‑93 (MQ=255)
gATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGcc < 1:862095/93‑1 (MQ=255)
aTACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCa < 2:6095812/93‑1 (MQ=255)
aTACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCa > 2:2089040/1‑93 (MQ=255)
tACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAg < 2:5309506/93‑1 (MQ=255)
tACCAGGCCTGAGAGAACAAAGATAATAATTTGGGTGCAAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAg < 2:487603/93‑1 (MQ=255)
cAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAgggg > 1:3765133/1‑92 (MQ=255)
aGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGTCGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGgtg > 2:126695/1‑93 (MQ=255)
aGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGgtg > 2:2395067/1‑93 (MQ=255)
ggCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGgtgt < 2:4269438/93‑1 (MQ=255)
gCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGtt > 2:2566584/1‑93 (MQ=255)
ccTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTa < 2:6203773/93‑1 (MQ=255)
agagaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGAc > 1:1241633/1‑93 (MQ=255)
agaACAAAGATAATAATTTTGGTGCGAACAACCGGTACCCCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCa < 1:4568312/93‑1 (MQ=255)
gaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCaa > 1:1152773/1‑93 (MQ=255)
gaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCaa < 1:437819/93‑1 (MQ=255)
gaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCaa > 2:5454969/1‑93 (MQ=255)
gaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCaa > 1:1547581/1‑93 (MQ=255)
gaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGACAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCaa > 1:3380628/1‑93 (MQ=255)
aaCAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCaaa < 1:5523307/93‑1 (MQ=255)
aCAAAGATAATAATTTTGTGGCGAACACCCGGTACCCCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAg < 2:2627029/93‑1 (MQ=255)
aCAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCaacg > 1:1678396/1‑91 (MQ=255)
aCAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAg < 1:3593299/93‑1 (MQ=255)
cAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAgg > 2:5964638/1‑93 (MQ=255)
cAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAgg > 2:3079429/1‑93 (MQ=255)
cAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAgg > 1:3851353/1‑93 (MQ=255)
aaaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggt < 1:5550494/93‑1 (MQ=255)
aaaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggg > 2:3176543/1‑92 (MQ=255)
aaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtg > 2:5636436/1‑93 (MQ=255)
aaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtg > 1:5637255/1‑93 (MQ=255)
aGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtgg > 1:208592/1‑93 (MQ=255)
aGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtgg < 2:2226730/93‑1 (MQ=255)
gATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCACAggtggt > 2:464545/1‑93 (MQ=255)
gATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtggt < 2:1632357/93‑1 (MQ=255)
gATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtggt < 1:2244330/93‑1 (MQ=255)
gATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtggt > 1:3113942/1‑93 (MQ=255)
ataataATTTTTGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGtt < 1:389852/93‑1 (MQ=255)
ataataATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGtt > 1:4895989/1‑93 (MQ=255)
taataaTTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGttt > 2:3713672/1‑93 (MQ=255)
ataatTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTa > 1:941936/1‑93 (MQ=255)
ataatTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTa > 2:439768/1‑93 (MQ=255)
ataatTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGCTTTa > 1:2658939/1‑93 (MQ=255)
aatTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTAtt > 1:5473347/1‑93 (MQ=255)
atTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTc > 2:1072226/1‑93 (MQ=255)
ttGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTcagc > 2:2040400/1‑93 (MQ=255)
tgttGCGAACACCCGGTACACCCTCCAGACGCGCGTC‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTcagca < 1:4017576/90‑1 (MQ=255)
gTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCagcagc > 1:3199566/1‑93 (MQ=255)
gCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCaa > 1:25956/1‑93 (MQ=255)
cGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCaaa > 2:3863671/1‑93 (MQ=255)
gAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAAc > 1:275567/1‑93 (MQ=255)
gAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAAc > 2:5346858/1‑93 (MQ=255)
aacaacCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAAcc > 2:2494150/1‑93 (MQ=255)
acaacCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCa < 2:5567198/93‑1 (MQ=255)
acaacCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCa > 2:2810650/1‑93 (MQ=255)
aacCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCaaa > 2:1209107/1‑93 (MQ=255)
acCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAg > 1:2494776/1‑93 (MQ=255)
acCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAg > 1:3439405/1‑93 (MQ=255)
ccGGTACCCCCGCCAGACGCGCG‑GCCTCTTCGTCCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGa < 2:653831/93‑1 (MQ=255)
ccGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGa > 1:6150214/1‑93 (MQ=255)
ggTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATa > 2:5145170/1‑93 (MQ=255)
gTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATaa > 1:1083588/1‑93 (MQ=255)
gTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATaa > 1:2338755/1‑93 (MQ=255)
gTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATaa > 2:2280172/1‑93 (MQ=255)
cacCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCa < 1:6057384/93‑1 (MQ=255)
cacCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCa > 1:5266308/1‑93 (MQ=255)
ccccGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAg < 1:590380/92‑1 (MQ=255)
acCCGCAAGCCGCGCGTC‑CTCTTCGTCCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAg < 2:5847126/93‑1 (MQ=255)
cccGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGa > 2:4089263/1‑93 (MQ=255)
ccGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGac < 2:1482694/93‑1 (MQ=255)
gCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCATGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGacac > 1:3675429/1‑93 (MQ=255)
ccAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACAcg < 2:5001531/93‑1 (MQ=255)
ccAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACAcg > 2:6269117/1‑93 (MQ=255)
cAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACAcgc > 1:706253/1‑93 (MQ=255)
gACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGa > 2:5195785/1‑93 (MQ=255)
gACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGa < 2:4940196/93‑1 (MQ=255)
gcgcg‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACgg > 1:1102073/1‑93 (MQ=255)
|
CCAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGT > NC_000913/1980847‑1981026
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAG > NC_000913/1980848‑1981033
|
CAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑CC > SRR4302533.3077850/1‑94 (MQ=60)
CAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑CC > SRR4302533.1175276/1‑94 (MQ=60)
AGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑Cct > SRR4302533.3976860/1‑92 (MQ=60)
GAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑Cctc > SRR4302533.3322306/1‑91 (MQ=60)
AATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGGTAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCT > SRR4302533.3408624/1‑94 (MQ=60)
AATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCT < SRR4302533.5804941/94‑1 (MQ=60)
ATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTT > SRR4302533.5377780/1‑94 (MQ=60)
ATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTT > SRR4302533.438137/1‑94 (MQ=60)
ATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTT > SRR4302533.142175/1‑94 (MQ=60)
AATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCG > SRR4302533.34578/1‑94 (MQ=60)
ATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGT < SRR4302533.2874475/94‑1 (MQ=60)
CCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCC > SRR4302533.5915355/1‑94 (MQ=60)
CGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCC > SRR4302533.5679154/1‑94 (MQ=60)
CGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCC < SRR4302533.5822633/94‑1 (MQ=60)
GGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCC > SRR4302533.5027467/1‑94 (MQ=60)
GCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGC > SRR4302533.918705/1‑94 (MQ=60)
CTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCC < SRR4302533.5090803/94‑1 (MQ=60)
ATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAA > SRR4302533.5159260/1‑94 (MQ=60)
CGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACCCCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATC < SRR4302533.2923958/94‑1 (MQ=60)
GCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCC > SRR4302533.313744/1‑94 (MQ=60)
CTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGC > SRR4302533.3844630/1‑94 (MQ=60)
CTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGC > SRR4302533.6158759/1‑94 (MQ=60)
TGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCC > SRR4302533.3041964/1‑94 (MQ=60)
GATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCA < SRR4302533.867148/94‑1 (MQ=60)
ATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAG < SRR4302533.4040826/94‑1 (MQ=60)
TACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGG < SRR4302533.4688092/94‑1 (MQ=60)
ACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGG < SRR4302533.2331533/94‑1 (MQ=60)
ACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGG < SRR4302533.3883342/94‑1 (MQ=60)
CCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGG > SRR4302533.3788211/1‑94 (MQ=60)
GGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTT < SRR4302533.3561056/94‑1 (MQ=60)
GGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGACAGACGCGCG‑GCCTCTTCGATCCCGCCAATCGCCAGcgcgct > SRR4302533.3810597/1‑88 (MQ=60)
GCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTA < SRR4302533.2393011/94‑1 (MQ=60)
CCGGAGAGAACAAAGATAATAATTTTGGTGCCAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTAC < SRR4302533.2207497/94‑1 (MQ=60)
TGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGC > SRR4302533.5106047/1‑94 (MQ=60)
GAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGAC > SRR4302533.1540784/1‑94 (MQ=60)
GAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGAC > SRR4302533.1249053/1‑94 (MQ=60)
AGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACC > SRR4302533.2098214/1‑94 (MQ=60)
GAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCA > SRR4302533.4405328/1‑94 (MQ=60)
AGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACCCCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAA < SRR4302533.4596002/94‑1 (MQ=60)
AGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAA > SRR4302533.1159676/1‑94 (MQ=60)
AGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAA > SRR4302533.1556906/1‑94 (MQ=60)
AGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGACAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAA > SRR4302533.3401498/1‑94 (MQ=60)
GAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAA < SRR4302533.440427/94‑1 (MQ=60)
AACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAACG > SRR4302533.1688563/1‑94 (MQ=60)
AACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAG < SRR4302533.5556655/94‑1 (MQ=60)
ACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGG > SRR4302533.3874872/1‑94 (MQ=60)
ACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGG < SRR4302533.3615411/94‑1 (MQ=60)
AAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTG < SRR4302533.5584013/94‑1 (MQ=60)
AAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTG > SRR4302533.5671341/1‑94 (MQ=60)
AAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGG > SRR4302533.209912/1‑94 (MQ=60)
AGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGT < SRR4302533.3965722/94‑1 (MQ=60)
AGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGT > SRR4302533.3133093/1‑94 (MQ=60)
AGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGT > SRR4302533.2614790/1‑94 (MQ=60)
GATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTT > SRR4302533.4925655/1‑94 (MQ=60)
GATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTT < SRR4302533.2258200/94‑1 (MQ=60)
ATAATAATTTTTGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTT < SRR4302533.392207/94‑1 (MQ=60)
ATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTT < SRR4302533.2589735/94‑1 (MQ=60)
AATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTA > SRR4302533.947477/1‑94 (MQ=60)
AATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGCTTTA > SRR4302533.2675271/1‑94 (MQ=60)
ATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTAT < SRR4302533.686077/94‑1 (MQ=60)
TAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATT > SRR4302533.5506337/1‑94 (MQ=60)
TAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATT > SRR4302533.5277581/1‑94 (MQ=60)
AATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTC > SRR4302533.3456990/1‑94 (MQ=60)
ATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCA > SRR4302533.1565223/1‑94 (MQ=60)
TTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAG < SRR4302533.3643389/94‑1 (MQ=60)
TGTTGCGAACACCCGGTACACCCTCCAGACGCGCGTC‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAG < SRR4302533.4042037/94‑1 (MQ=60)
GGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGC > SRR4302533.3219256/1‑94 (MQ=60)
GGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGC < SRR4302533.5633138/94‑1 (MQ=60)
TGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAA > SRR4302533.26129/1‑94 (MQ=60)
TGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGGTACGACCAAAGGTGGTTTTATTCAGCAGCAA > SRR4302533.5533263/1‑94 (MQ=60)
GCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGGGTTACGACCAAAGGGGGTTTTATTCAGCAGCAAA > SRR4302533.3889852/1‑94 (MQ=60)
CGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAAC > SRR4302533.277244/1‑94 (MQ=60)
GAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACC < SRR4302533.2861518/94‑1 (MQ=60)
ACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAA > SRR4302533.2716625/1‑94 (MQ=60)
AACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAG > SRR4302533.2510168/1‑94 (MQ=60)
AACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAG > SRR4302533.3460647/1‑94 (MQ=60)
ACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGA > SRR4302533.5735422/1‑94 (MQ=60)
ACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGA > SRR4302533.6187234/1‑94 (MQ=60)
CGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATA < SRR4302533.3058556/94‑1 (MQ=60)
GGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAA > SRR4302533.1089978/1‑94 (MQ=60)
GGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAA < SRR4302533.1107569/94‑1 (MQ=60)
GGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAA > SRR4302533.2353237/1‑94 (MQ=60)
GGTACACCCGCCAGACGCGCG‑GACTCTTCTTTTCCGCCAATCGCCAGGGCGTTACGACCAAAGGAGGATTTATTAAGCAGCAAACCAAAGATAA > SRR4302533.4629492/1‑94 (MQ=60)
TACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATC > SRR4302533.2125377/1‑94 (MQ=60)
ACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCA > SRR4302533.5297908/1‑94 (MQ=60)
ACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCA < SRR4302533.5972473/94‑1 (MQ=60)
CACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAG > SRR4302533.537201/1‑94 (MQ=60)
CACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAG < SRR4302533.1154720/94‑1 (MQ=60)
CACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAG < SRR4302533.6094060/94‑1 (MQ=60)
CACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAG < SRR4302533.3709895/94‑1 (MQ=60)
CACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAG > SRR4302533.5564545/1‑94 (MQ=60)
CCCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGA < SRR4302533.593865/94‑1 (MQ=60)
CCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGAC < SRR4302533.2974414/94‑1 (MQ=60)
CCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGAC < SRR4302533.4344291/94‑1 (MQ=60)
CGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCATGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACAC > SRR4302533.3698015/1‑94 (MQ=60)
CCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGC > SRR4302533.710423/1‑94 (MQ=60)
CCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGAGGTTTTATTCAGCAGCCAACCAAAGATAATCAGACACGC > SRR4302533.777979/1‑94 (MQ=60)
CAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCG > SRR4302533.5819763/1‑94 (MQ=60)
ACGCGCG‑GCCTCTTCGTTCCCGCCAATCTCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACG < SRR4302533.3096269/94‑1 (MQ=60)
CGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGG > SRR4302533.1108601/1‑94 (MQ=60)
GCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGGGGTTCGACCAAAGGTGGGTTTATTTAGCAGGAAACTAAAAATAATCAGACAAGCGACGGG > SRR4302533.1425017/1‑94 (MQ=36)
CGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTG > SRR4302533.1017506/1‑94 (MQ=60)
G‑C‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCC > SRR4302533.5591109/1‑94 (MQ=60)
ggcCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGC > SRR4302533.1658521/4‑94 (MQ=60)
C‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCA < SRR4302533.3588452/94‑1 (MQ=60)
C‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCA > SRR4302533.691326/1‑94 (MQ=60)
CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAG > SRR4302533.2868040/1‑94 (MQ=60)
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CAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAG > NC_000913/1980848‑1981033
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
