Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,983,543 |
(C)5→4 |
coding (609/990 nt) |
araF ← |
L‑arabinose‑binding periplasmic protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,983,539 | 0 | C | . | 97.6%
| 914.4
/ 9.5
| 208 | coding (613/990 nt) | araF | L‑arabinose‑binding periplasmic protein |
| Reads supporting (aligned to +/- strand): ref base C (1/4); new base . (100/103); total (101/107) |
| Fisher's exact test for biased strand distribution p-value = 3.70e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.34e-01 |
Only 100 of 228 total aligned reads displayed.
GCCGCCCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTA > NC_000913/1983447‑1983627
|
gccgccCAGCACGGTGCTGTCGTTCATACCGCCGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGAAGCGTCAAATGc > 2:1533179/1‑93 (MQ=255)
ccgccCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGcc > 2:570833/1‑93 (MQ=255)
cgccCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGACTTGGCAGCGTCAAATGccc < 2:6129183/93‑1 (MQ=255)
gccCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGcccc < 2:2095934/93‑1 (MQ=255)
gccCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGcccc < 1:1581297/93‑1 (MQ=255)
gccCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGcccc < 2:3093610/93‑1 (MQ=255)
gccCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGcccc < 2:4354360/93‑1 (MQ=255)
gccCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGcccc < 2:4749766/93‑1 (MQ=255)
cccAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGcgccg > 1:1111675/1‑92 (MQ=255)
ccAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGccccgg < 2:5980589/93‑3 (MQ=255)
aGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCggga < 1:3701874/93‑2 (MQ=255)
gCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGAt < 2:2441413/93‑1 (MQ=255)
ccGGTTCTGTCTTCCATGCCGTCGATCAGCCAATGTTTAACTGCCGGATGTTGAACGCGCATTGAGTCGGCAGCGTCATATG‑CGCCGGGATGt < 2:4004760/92‑1 (MQ=255)
aCGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGt > 1:1298916/1‑93 (MQ=255)
ggTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCg > 2:2046018/1‑93 (MQ=255)
gTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGt > 1:1016596/1‑93 (MQ=255)
gTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGATGGCAGCGTCAAATG‑CCCCGGGATGTCGt < 2:4496491/93‑1 (MQ=255)
gCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTa < 2:133200/93‑1 (MQ=255)
gCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTa < 2:3422280/93‑1 (MQ=255)
gCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTa < 1:4931669/93‑1 (MQ=255)
tGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGTGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGa > 2:3140076/1‑93 (MQ=255)
gatCATACCGACGATGAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTg < 2:4194029/91‑1 (MQ=255)
gTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTg < 1:5704330/93‑1 (MQ=255)
ttCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTgg > 1:775763/1‑93 (MQ=255)
cATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTggta < 2:1856909/93‑1 (MQ=255)
aTACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTggtag < 2:5551196/93‑1 (MQ=255)
tACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTggtagg > 2:3493167/1‑93 (MQ=255)
ccGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTggtaggta < 1:2390754/93‑1 (MQ=255)
cgacgaTCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTAc > 1:5055027/1‑93 (MQ=255)
gacgaTCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTAcc > 1:4373009/1‑93 (MQ=255)
gacgaTCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTAcc > 1:5534155/1‑93 (MQ=255)
gacgaTCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTAcc < 1:4761473/93‑1 (MQ=255)
acgaTCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCt < 2:3531807/93‑1 (MQ=255)
acgaTCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCt > 1:5930701/1‑93 (MQ=255)
acgaTCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCt > 1:2098645/1‑93 (MQ=255)
cgaTCAGCAAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTg < 1:5678432/93‑1 (MQ=255)
tCAGCGAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATa < 2:5869906/93‑1 (MQ=255)
tCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATa < 1:973967/93‑1 (MQ=255)
tCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATa < 1:3212334/93‑1 (MQ=255)
tCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATa > 1:4203017/1‑93 (MQ=255)
cAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATaa > 2:5373069/1‑93 (MQ=255)
aGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATaaa > 1:483805/1‑93 (MQ=255)
gCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAAt > 2:3291912/1‑93 (MQ=255)
gCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAAt > 1:3254880/1‑93 (MQ=255)
gCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAAt < 2:1049057/93‑1 (MQ=255)
ccAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAAtt < 1:5223273/93‑1 (MQ=255)
cAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAAttt > 1:2127885/1‑93 (MQ=255)
cAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAAttt < 2:1447891/93‑1 (MQ=255)
aTGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGt > 2:1058470/1‑93 (MQ=255)
tGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGtt > 1:3290039/1‑93 (MQ=255)
gTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGttt > 2:276635/1‑93 (MQ=255)
gTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGttt < 2:1405796/93‑1 (MQ=255)
tttAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGtttt < 2:5464158/93‑1 (MQ=255)
tttAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGtttt < 1:1730361/93‑1 (MQ=255)
tttAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGtttt > 1:4697134/1‑93 (MQ=255)
ttAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGttttt > 2:747600/1‑93 (MQ=255)
ttAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGttttt > 1:2170652/1‑93 (MQ=255)
tAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTc < 2:1576234/93‑1 (MQ=255)
tAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTc < 2:2261903/93‑1 (MQ=255)
aaCTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTcc < 1:4521610/93‑1 (MQ=255)
cTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCgg < 2:6279028/93‑1 (MQ=255)
cTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCgg < 2:939680/93‑1 (MQ=255)
ttCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCggg > 2:13066/1‑93 (MQ=255)
ttCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCggg > 1:4978833/1‑93 (MQ=255)
ttCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCggg < 2:4315239/93‑1 (MQ=255)
ccGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGaa > 1:2659552/1‑93 (MQ=255)
cGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAAt > 2:4221570/1‑93 (MQ=255)
cGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAAt < 2:1602027/93‑1 (MQ=255)
ggATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATc > 1:3752141/1‑93 (MQ=255)
gATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGCTAAATTTGTTTTTCCGGGAATcg > 2:1763869/1‑92 (MQ=255)
gATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATcc < 2:2718554/93‑1 (MQ=255)
gATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATcc > 1:5171631/1‑93 (MQ=255)
tGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGCTAAATTTGTTTTTCCGGGAATCCgc > 1:198816/1‑92 (MQ=255)
gTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGc > 2:2325832/1‑93 (MQ=255)
aCCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCtt > 1:1086916/1‑93 (MQ=255)
ccAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCttt < 1:2496110/93‑1 (MQ=255)
cAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTc > 1:5210191/1‑93 (MQ=255)
cAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTc > 2:2620425/1‑93 (MQ=255)
aGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCa < 1:3525802/93‑1 (MQ=255)
aGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCa > 1:1073580/1‑93 (MQ=255)
aGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCa > 1:692468/1‑93 (MQ=255)
aGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCa < 2:2885181/93‑1 (MQ=255)
cATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAgc < 1:4491868/93‑1 (MQ=255)
cATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAgc < 2:5920695/93‑1 (MQ=255)
aTTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAgcg > 2:5792588/1‑93 (MQ=255)
aGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATc < 1:3333858/93‑1 (MQ=255)
gTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTGCGGGAATCCGGCCGCTTTCAGCGCATca > 1:1460556/1‑92 (MQ=255)
ttGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCa < 1:5994779/93‑1 (MQ=255)
ggCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATa < 1:190526/93‑1 (MQ=255)
ggCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATa < 1:3039803/93‑1 (MQ=255)
gCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAg > 1:5197724/1‑93 (MQ=255)
cAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGa > 1:5521247/1‑93 (MQ=255)
gCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATc < 1:5426719/93‑1 (MQ=255)
gCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATc > 1:1959050/1‑93 (MQ=255)
gCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATc < 2:2025039/93‑1 (MQ=255)
cGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATcc > 2:4417107/1‑93 (MQ=255)
cGTAAAATG‑CCCCGGAATGTCGTTAGATTTAGTAGGTAACTGATAAATTGGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATcc < 2:4931863/93‑1 (MQ=255)
gTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATccc < 1:4585197/93‑1 (MQ=255)
gTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATccc < 2:2037620/93‑1 (MQ=255)
aaaTG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCgta < 2:4639600/93‑1 (MQ=255)
|
GCCGCCCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTA > NC_000913/1983447‑1983627
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCCCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACGGCGG > NC_000913/1983450‑1983636
|
GCCCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCG < SRR4302533.1590822/94‑1 (MQ=60)
GCCCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCG > SRR4302533.1565147/1‑94 (MQ=60)
CAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGA > SRR4302533.10797/1‑94 (MQ=60)
AGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGAT < SRR4302533.4526787/94‑1 (MQ=60)
AGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGAT < SRR4302533.3724605/94‑1 (MQ=60)
CACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGT > SRR4302533.1306732/1‑94 (MQ=60)
CGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCG > SRR4302533.2354451/1‑94 (MQ=60)
GGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCTGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGT > SRR4302533.3260968/1‑94 (MQ=60)
GGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGT > SRR4302533.1022570/1‑94 (MQ=60)
GTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTT > SRR4302533.5211196/1‑94 (MQ=60)
GCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAG > SRR4302533.601135/1‑94 (MQ=60)
GCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAG > SRR4302533.5693008/1‑94 (MQ=60)
GCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAG < SRR4302533.4961534/94‑1 (MQ=60)
GCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAG < SRR4302533.1081508/94‑1 (MQ=60)
CTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGA > SRR4302533.6330513/1‑94 (MQ=60)
TGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGAT > SRR4302533.2049196/1‑94 (MQ=60)
GTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATT < SRR4302533.5561930/94‑1 (MQ=60)
TCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTT < SRR4302533.4926127/94‑1 (MQ=60)
GTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAAGCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGG > SRR4302533.4788242/1‑94 (MQ=60)
GTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGG < SRR4302533.5738787/94‑1 (MQ=60)
GTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGG > SRR4302533.780320/1‑94 (MQ=60)
TTCATACCGACGATCAGCCAATGTTTAACTTCCGGATTTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGT > SRR4302533.4586770/1‑94 (MQ=60)
TTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGT < SRR4302533.2683407/94‑1 (MQ=60)
CATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAG < SRR4302533.4634112/94‑1 (MQ=60)
CATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAG < SRR4302533.3334437/94‑1 (MQ=60)
CATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAG < SRR4302533.3283758/94‑1 (MQ=60)
ACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGNTAGNTA > SRR4302533.1307426/1‑94 (MQ=60)
ACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTA > SRR4302533.3806024/1‑94 (MQ=60)
CCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTAC > SRR4302533.5085586/1‑94 (MQ=60)
CCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTAC < SRR4302533.2405516/94‑1 (MQ=60)
CCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTAC < SRR4302533.940890/94‑1 (MQ=60)
CGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACC > SRR4302533.49536/1‑94 (MQ=60)
CGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACC > SRR4302533.5259774/1‑94 (MQ=60)
CGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACC > SRR4302533.5567566/1‑94 (MQ=60)
CGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACC > SRR4302533.4399407/1‑94 (MQ=60)
GACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCT < SRR4302533.4790357/94‑1 (MQ=60)
GACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCT > SRR4302533.5966555/1‑94 (MQ=60)
GACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCT > SRR4302533.983021/1‑94 (MQ=60)
GACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCT > SRR4302533.2111592/1‑94 (MQ=60)
CGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGA > SRR4302533.1939697/1‑94 (MQ=60)
CGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGA < SRR4302533.5547141/94‑1 (MQ=60)
CGATCAGCAAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGA < SRR4302533.5712728/94‑1 (MQ=60)
GATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGAT > SRR4302533.4438803/1‑94 (MQ=60)
GATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGAT > SRR4302533.5149751/1‑94 (MQ=60)
ATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATA > SRR4302533.1180574/1‑94 (MQ=60)
ATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATA > SRR4302533.4574083/1‑94 (MQ=60)
ATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATA > SRR4302533.4228445/1‑94 (MQ=60)
ATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATA > SRR4302533.3110338/1‑94 (MQ=60)
TCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAA > SRR4302533.4824568/1‑94 (MQ=60)
TCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAA < SRR4302533.979685/94‑1 (MQ=60)
TCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAA < SRR4302533.3232120/94‑1 (MQ=60)
CAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAA > SRR4302533.486695/1‑94 (MQ=60)
AGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAAT > SRR4302533.3274952/1‑94 (MQ=60)
CCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTT > SRR4302533.1988262/1‑94 (MQ=60)
CCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTT < SRR4302533.5254697/94‑1 (MQ=60)
CCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTT > SRR4302533.2141008/1‑94 (MQ=60)
AATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGT < SRR4302533.5230563/94‑1 (MQ=60)
AATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGT < SRR4302533.5626846/94‑1 (MQ=60)
ATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTT > SRR4302533.3310351/1‑94 (MQ=60)
TGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTT < SRR4302533.1114181/94‑1 (MQ=60)
TGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTT < SRR4302533.5731825/94‑1 (MQ=60)
TGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTT > SRR4302533.5387781/1‑94 (MQ=60)
GTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTT > SRR4302533.4725609/1‑94 (MQ=60)
GTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTT < SRR4302533.4249194/94‑1 (MQ=60)
TTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTT < SRR4302533.1740851/94‑1 (MQ=60)
TTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTT > SRR4302533.2184000/1‑94 (MQ=60)
TTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTT < SRR4302533.3138565/94‑1 (MQ=60)
TTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTC > SRR4302533.3768507/1‑94 (MQ=60)
TAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCC < SRR4302533.1214470/94‑1 (MQ=60)
AACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCG < SRR4302533.2123185/94‑1 (MQ=60)
AACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCG < SRR4302533.4548988/94‑1 (MQ=60)
ACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGG < SRR4302533.1847724/94‑1 (MQ=60)
ACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGG < SRR4302533.2183841/94‑1 (MQ=60)
CTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGG < SRR4302533.204793/94‑1 (MQ=60)
CTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGG > SRR4302533.5009022/1‑94 (MQ=60)
TCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAA > SRR4302533.2675885/1‑94 (MQ=60)
CCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAAT < SRR4302533.5803144/94‑1 (MQ=60)
CGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATC > SRR4302533.3775144/1‑94 (MQ=60)
GGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCC > SRR4302533.5202838/1‑94 (MQ=60)
ATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGCTAAATTTGTTTTTCCGGGAATCCGC > SRR4302533.200074/1‑94 (MQ=60)
ATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGG < SRR4302533.5087767/94‑1 (MQ=60)
TGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGC > SRR4302533.3559408/1‑94 (MQ=60)
GTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCC < SRR4302533.72580/94‑1 (MQ=60)
GTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCC < SRR4302533.3480980/94‑1 (MQ=60)
AACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTT > SRR4302533.1093321/1‑94 (MQ=60)
ACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTT < SRR4302533.1656881/94‑1 (MQ=60)
ACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTT > SRR4302533.1829297/1‑94 (MQ=60)
CCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTC > SRR4302533.5241573/1‑94 (MQ=60)
CCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTC < SRR4302533.2520397/94‑1 (MQ=60)
CCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTC < SRR4302533.2511508/94‑1 (MQ=60)
CAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTCGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCA < SRR4302533.3401531/94‑1 (MQ=60)
CAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCA > SRR4302533.696558/1‑94 (MQ=60)
CAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCA < SRR4302533.5033843/94‑1 (MQ=60)
CAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCA > SRR4302533.1079909/1‑94 (MQ=60)
CAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGACGCTTTCA > SRR4302533.6233238/1‑94 (MQ=60)
AGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAG < SRR4302533.3547528/94‑1 (MQ=60)
CATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCG < SRR4302533.4519069/94‑1 (MQ=60)
ATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGC > SRR4302533.4983645/1‑94 (MQ=60)
AGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTGCGGGAATCCGGCCGCTTTCAGCGCATCA > SRR4302533.1469359/1‑94 (MQ=60)
AGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCC < SRR4302533.3354456/94‑1 (MQ=60)
TTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCAT < SRR4302533.6031087/94‑1 (MQ=60)
GGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAG < SRR4302533.3058406/94‑1 (MQ=60)
GGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAG < SRR4302533.191723/94‑1 (MQ=60)
GGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAG > SRR4302533.5229070/1‑94 (MQ=60)
GCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGA > SRR4302533.5554581/1‑94 (MQ=60)
CAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGAT < SRR4302533.5249461/94‑1 (MQ=60)
CAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGAT > SRR4302533.2482400/1‑94 (MQ=60)
AGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATC > SRR4302533.1971007/1‑94 (MQ=60)
GCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCC > SRR4302533.3779414/1‑94 (MQ=60)
GCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCC < SRR4302533.5459401/94‑1 (MQ=60)
GTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCG < SRR4302533.4612974/94‑1 (MQ=60)
GTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCG > SRR4302533.2505063/1‑94 (MQ=60)
AATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGT < SRR4302533.2537562/94‑1 (MQ=60)
GCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACG < SRR4302533.1824965/94‑1 (MQ=60)
CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACGG < SRR4302533.404681/94‑1 (MQ=60)
CCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACGGC > SRR4302533.1373575/1‑94 (MQ=60)
CCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACGGC > SRR4302533.1433292/1‑94 (MQ=60)
CCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACGGC > SRR4302533.4325088/1‑94 (MQ=60)
CCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACGGCG < SRR4302533.4063829/94‑1 (MQ=60)
CGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACGGCGG < SRR4302533.3793859/94‑1 (MQ=60)
CGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACGGCGG > SRR4302533.1011349/1‑94 (MQ=60)
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GCCCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACGGCGG > NC_000913/1983450‑1983636
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
