Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,028,708	A→G	V78A (GTG→GCG)	vsr ←	DNA mismatch endonuclease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,028,708	0	A	G	100.0%	778.8 / NA	239	V78A (GTG→GCG)	vsr	DNA mismatch endonuclease
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (116/123); total (116/123)

Only 100 of 244 total aligned reads displayed.

CCGAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCACTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATTCATCAACG‑ACAAAATCCGGACGT  >  NC_000913/2028618‑2028797

  gAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCttt                                                                                         >  2:3788252/1‑93 (MQ=255)

  gAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCttt                                                                                         >  1:5532078/1‑93 (MQ=255)

     ttCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTaaa                                                                                      >  2:762348/1‑93 (MQ=255)

         tGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGa                                                                                  >  2:28142/1‑93 (MQ=255)

         tGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGa                                                                                  <  2:712842/93‑1 (MQ=255)

          gCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGAt                                                                                 <  1:4865593/93‑1 (MQ=255)

           cAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATa                                                                                <  1:5568033/93‑1 (MQ=255)

           cAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATa                                                                                >  1:4904873/1‑93 (MQ=255)

           cAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATa                                                                                <  2:5762973/93‑1 (MQ=255)

           aacgCGACTGATATCGCGGCAATCGCGCTCAACATTTTTGCCTATCTTCTCCAGCCGCAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATa                                                                                <  2:1033383/90‑1 (MQ=255)

            aaGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAg                                                                               >  1:1199914/1‑93 (MQ=255)

            aaGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAg                                                                               <  1:4511297/93‑1 (MQ=255)

             aGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGc                                                                              <  2:2382537/93‑1 (MQ=255)

             aGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGc                                                                              <  1:2796043/93‑1 (MQ=255)

              gCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCa                                                                             <  1:5810953/93‑1 (MQ=255)

               cGACTGATATCGCGGCGATCGCGCTCAACATTTTTTCCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAg                                                                            <  1:2635314/93‑1 (MQ=255)

                 aCTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGtg                                                                          >  1:6167211/1‑93 (MQ=255)

                 aCTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGtg                                                                          >  2:5555599/1‑93 (MQ=255)

                 aCTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGtg                                                                          >  2:2923911/1‑93 (MQ=255)

                 aCTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGtg                                                                          >  2:5226599/1‑93 (MQ=255)

                  cTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGtga                                                                         <  1:1249831/93‑1 (MQ=255)

                   tGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGtgat                                                                        <  2:1194159/93‑1 (MQ=255)

                    gATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGtgatg                                                                       <  2:5058206/93‑1 (MQ=255)

                    gATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGtgatg                                                                       >  2:5358909/1‑93 (MQ=255)

                     atatCGCTGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGtgatga                                                                      <  1:1575968/93‑1 (MQ=255)

                     atatCGCGGCGATCGCGCTCAACATTTTTATCTATCTACTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGtgatga                                                                      <  2:5920011/93‑1 (MQ=255)

                     atatCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGtgatga                                                                      <  2:4649908/93‑1 (MQ=255)

                      tatCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGtgatgat                                                                     >  2:2460406/1‑93 (MQ=255)

                        tCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGtgatgatga                                                                   <  1:4103674/93‑1 (MQ=255)

                          gcggcgATCGCGCTCAACATTTTTACCTATCTTGTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGatgatgatg                                                                 >  1:5138405/1‑93 (MQ=255)

                            ggcgATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGcc                                                               <  1:5917118/93‑1 (MQ=255)

                             gcgATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCa                                                              >  2:5474026/1‑93 (MQ=255)

                             gcgATCGCGCTCAACATTTTTACCTATCGTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCa                                                              <  1:2428060/93‑1 (MQ=255)

                               gATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGa                                                            <  1:6277885/93‑1 (MQ=255)

                                aTCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGaa                                                           <  1:2864413/93‑1 (MQ=255)

                                     gcTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAagcagc                                                      <  2:1972101/93‑1 (MQ=255)

                                       tCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCa                                                    <  2:5668550/93‑1 (MQ=255)

                                       tCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCa                                                    <  1:3078698/93‑1 (MQ=255)

                                       tCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCa                                                    >  2:1445476/1‑93 (MQ=255)

                                       tCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCa                                                    >  1:370212/1‑93 (MQ=255)

                                        cAACATTTTTACCTATCTTCTCCAGCCAGACCTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCAt                                                   <  2:5528229/93‑1 (MQ=255)

                                        cAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCAt                                                   <  2:4520074/93‑1 (MQ=255)

                                         aaCATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATg                                                  <  2:4375787/93‑1 (MQ=255)

                                           cATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATggg                                                >  1:3479755/1‑93 (MQ=255)

                                            aTTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGt                                               <  2:1307801/93‑1 (MQ=255)

                                            aTTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGt                                               >  2:3025020/1‑93 (MQ=255)

                                              ttttACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTaa                                             <  2:6180600/93‑1 (MQ=255)

                                               tttACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTaaa                                            <  2:4023439/93‑1 (MQ=255)

                                               tttACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTaaa                                            <  1:4962805/93‑1 (MQ=255)

                                                ttACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAat                                           <  1:1956566/93‑1 (MQ=255)

                                                ttACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAat                                           <  2:2270664/93‑1 (MQ=255)

                                                 tACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAata                                          <  2:109552/93‑1 (MQ=255)

                                                   ccTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑Tc                                       <  2:178908/93‑1 (MQ=255)

                                                   ccTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCAATGGGTAAATA‑Tc                                       >  2:4810097/1‑93 (MQ=255)

                                                     tATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCAc                                     >  2:3564861/1‑93 (MQ=255)

                                                     tATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCAc                                     <  2:5815418/93‑1 (MQ=255)

                                                      aTCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACg                                    <  1:830292/93‑1 (MQ=255)

                                                       tcttctCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTCAATA‑TCACGc                                   >  2:1855404/1‑93 (MQ=255)

                                                       tcttctCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGc                                   >  1:289887/1‑93 (MQ=255)

                                                        cttctCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCa                                  <  2:823232/93‑1 (MQ=255)

                                                          tctcCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGc                                <  1:5659901/93‑1 (MQ=255)

                                                            tcCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGa                              >  2:4602677/1‑93 (MQ=255)

                                                            tcCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGa                              >  2:5904859/1‑93 (MQ=255)

                                                              cagccagAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGata                            <  1:1007549/93‑1 (MQ=255)

                                                              cagccagAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGata                            >  1:3947327/1‑93 (MQ=255)

                                                               agcgagAACTCGGGTCGAGTCGCAGGCGCTTGAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGatat                           <  2:2142954/93‑1 (MQ=255)

                                                               agccagAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGatat                           <  1:1144146/93‑1 (MQ=255)

                                                                gccagAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATAtt                          >  2:6136483/1‑93 (MQ=255)

                                                                gccagAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATAtt                          >  2:371579/1‑93 (MQ=255)

                                                                  cagAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATtca                        <  1:2197976/93‑1 (MQ=255)

                                                                  cagAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATtca                        <  1:2547176/93‑1 (MQ=255)

                                                                  cagAACTCGGTGCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATtca                        <  1:4442938/93‑1 (MQ=255)

                                                                   agAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATtcat                       >  2:3389223/1‑93 (MQ=255)

                                                                     aaCTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATtcatca                     >  2:6027304/1‑93 (MQ=255)

                                                                      aCTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATTCATCaa                    <  1:5711681/93‑1 (MQ=255)

                                                                      aCTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATTCATCaa                    >  2:4157786/1‑93 (MQ=255)

                                                                      aCTCGGTTCGAGGCGCAGGCGCTTTAAACAGATTGCAGCGATGATGATGCCAGAAGCACGCATGGGTGAATA‑TCACGCAGCGATATTCATCaa                    >  2:4738846/1‑93 (MQ=255)

                                                                       cTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATTCATCAAc                   <  2:4074712/93‑1 (MQ=255)

                                                                       cTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATTCATCAAc                   <  2:3139384/93‑1 (MQ=255)

                                                                       cTCGGTTCGAGTCGCAGGCGCCTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATTCATCAAc                   >  2:1555926/1‑93 (MQ=255)

                                                                           gTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATTCATCAACG‑ACa              >  1:1355367/1‑93 (MQ=255)

                                                                            ttCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATTCATCAACG‑ACaa             <  2:175318/93‑1 (MQ=255)

                                                                            ttCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATTCATCAACG‑ACaa             >  1:4381926/1‑93 (MQ=255)

                                                                               gAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATTCATCAACG‑ACACAAt          >  2:3216471/1‑93 (MQ=255)

                                                                               gAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGAAGCCAGAAGCAGCCATGGG‑AAATATTCCCGCA‑CGAATTTCAACAACGAACaaaac          >  1:5308453/1‑92 (MQ=255)

                                                                               caGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATTCATCAACG‑ACAAAAt          <  2:3519572/92‑1 (MQ=255)

                                                                                aGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATTCATCAACG‑ACAAAATc         <  1:4914473/93‑1 (MQ=255)

                                                                                 gTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATTCATCAACG‑ACAAAATcc        <  1:728308/93‑1 (MQ=255)

                                                                                  tCGCAGGCGCTTTAAAGAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATTCATCAACG‑ACAAAATCCg       <  2:2598354/93‑1 (MQ=255)

                                                                                  tCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATTCATCAACG‑ACAAAATCCg       <  1:5437700/93‑1 (MQ=255)

                                                                                    gCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATTCATCAACG‑ACAAAATCCGGa     <  1:2309939/93‑1 (MQ=255)

                                                                                    gCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATTCATCAACG‑ACAAAATCCGGa     <  1:3196611/93‑1 (MQ=255)

                                                                                    gCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATTCATCAACG‑ACAAAATCCGGa     <  1:3811873/93‑1 (MQ=255)

                                                                                    gCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATTCATCAACG‑ACAAAATCCGGa     <  2:665147/93‑1 (MQ=255)

                                                                                     cAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATTCATCAACG‑ACAAAATCCGGAc    >  2:2699474/1‑93 (MQ=255)

                                                                                      aGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATTCATCAACG‑ACAAAATCCGGACg   >  1:3153093/1‑93 (MQ=255)

                                                                                      aGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATTCATCAACG‑ACAAAATCCGGACg   >  1:612720/1‑93 (MQ=255)

                                                                                      aGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATTCATAAACG‑ACAAAATCCGGACg   <  1:6075446/93‑1 (MQ=255)

                                                                                       ggCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATTCATCAACG‑ACAAAATCCGGACGt  >  1:4053993/1‑93 (MQ=255)

                                                                                       ggCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATTCATCAACG‑ACAAAATCCGGACGt  <  1:2070810/93‑1 (MQ=255)

CCGAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCACTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA‑TCACGCAGCGATATTCATCAACG‑ACAAAATCCGGACGT  >  NC_000913/2028618‑2028797

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CAGCCGAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCACTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGACGTCCG  >  NC_000913/2028615‑2028800

CAGCCGAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCG                                                                                              >  SRR4302533.4767194/1‑94 (MQ=60)

CAGCCGAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCG                                                                                              >  SRR4302533.1895814/1‑94 (MQ=60)

CAGCCGAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTGTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCG                                                                                              <  SRR4302533.1999589/94‑1 (MQ=60)

 AGCCGAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGC                                                                                             >  SRR4302533.2671215/1‑94 (MQ=60)

 AGCCGAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGC                                                                                             >  SRR4302533.5752622/1‑94 (MQ=60)

 AGCCGAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGACAGAACTCGGTTCGAGTCGCAGGCGC                                                                                             >  SRR4302533.3948510/1‑94 (MQ=60)

  GCCGAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAGCATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCT                                                                                            <  SRR4302533.4024239/94‑1 (MQ=60)

  GCCGAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCT                                                                                            <  SRR4302533.5657512/94‑1 (MQ=60)

    CGAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTT                                                                                          >  SRR4302533.6105738/1‑94 (MQ=60)

    CGAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTT                                                                                          >  SRR4302533.5565478/1‑94 (MQ=60)

     GAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTA                                                                                         <  SRR4302533.5463620/94‑1 (MQ=60)

     GAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTA                                                                                         >  SRR4302533.5615613/1‑94 (MQ=60)

      AGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAA                                                                                        >  SRR4302533.4561276/1‑94 (MQ=60)

         TCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACA                                                                                     >  SRR4302533.6116397/1‑94 (MQ=60)

         TCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACA                                                                                     <  SRR4302533.3097189/94‑1 (MQ=60)

           CTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGA                                                                                   >  SRR4302533.6220351/1‑94 (MQ=60)

           CTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGA                                                                                   >  SRR4302533.2606536/1‑94 (MQ=60)

            TGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGAT                                                                                  >  SRR4302533.3959619/1‑94 (MQ=60)

             GCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATA                                                                                 <  SRR4302533.1226690/94‑1 (MQ=60)

             GCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATA                                                                                 >  SRR4302533.4934594/1‑94 (MQ=60)

             GCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATA                                                                                 <  SRR4302533.4895077/94‑1 (MQ=60)

              CAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAG                                                                                >  SRR4302533.1207120/1‑94 (MQ=60)

              CAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAG                                                                                <  SRR4302533.5601690/94‑1 (MQ=60)

               AAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGC                                                                               <  SRR4302533.4538617/94‑1 (MQ=60)

                AGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCA                                                                              <  SRR4302533.2813238/94‑1 (MQ=60)

                AGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGACAGAACTCGGTTCGAGTCGAAGGCGCTTTAAACAGATAGCA                                                                              >  SRR4302533.1486718/1‑94 (MQ=60)

                 GCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAG                                                                             <  SRR4302533.5846045/94‑1 (MQ=60)

                 GCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAG                                                                             <  SRR4302533.691575/94‑1 (MQ=60)

                  CGACTGATATCGCGGCGATCGCGCTCAACATTTTTTCCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGT                                                                            <  SRR4302533.2651510/94‑1 (MQ=60)

                  CGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGT                                                                            >  SRR4302533.3163313/1‑94 (MQ=60)

                  CGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGACAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGT                                                                            >  SRR4302533.3805897/1‑94 (MQ=60)

                   GACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTG                                                                           >  SRR4302533.2612984/1‑94 (MQ=60)

                   GACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTG                                                                           >  SRR4302533.6204284/1‑94 (MQ=60)

                     CTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGAT                                                                         >  SRR4302533.2472486/1‑94 (MQ=60)

                     CTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGAT                                                                         <  SRR4302533.1257295/94‑1 (MQ=60)

                       GATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGA                                                                       >  SRR4302533.5308576/1‑94 (MQ=60)

                        ATATCGCTGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGAT                                                                      <  SRR4302533.1585456/94‑1 (MQ=60)

                        ATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGAT                                                                      <  SRR4302533.3485635/94‑1 (MQ=60)

                           TCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGAT                                                                   <  SRR4302533.4128637/94‑1 (MQ=60)

                            CGCGGCGATCGCGCTCAACATTTTTACCTATCTTGTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATG                                                                  >  SRR4302533.5169454/1‑94 (MQ=60)

                               GGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCA                                                               <  SRR4302533.291198/94‑1 (MQ=60)

                               GGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCA                                                               <  SRR4302533.5952878/94‑1 (MQ=60)

                               GGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCA                                                               >  SRR4302533.2962238/1‑94 (MQ=60)

                               GGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCA                                                               <  SRR4302533.3769149/94‑1 (MQ=60)

                                GCGATCGCGCTCAACATTTTTACCTATCGTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAG                                                              <  SRR4302533.2443072/94‑1 (MQ=60)

                                 CGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGA                                                             >  SRR4302533.4936101/1‑94 (MQ=60)

                                  GATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAA                                                            <  SRR4302533.6315366/94‑1 (MQ=60)

                                   ATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAG                                                           <  SRR4302533.2882032/94‑1 (MQ=60)

                                    TCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGC                                                          >  SRR4302533.4415444/1‑94 (MQ=60)

                                     CGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCA                                                         >  SRR4302533.4091414/1‑94 (MQ=60)

                                       CGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGC                                                       >  SRR4302533.5763932/1‑94 (MQ=60)

                                         CTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCA                                                     >  SRR4302533.372447/1‑94 (MQ=60)

                                         CTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCA                                                     >  SRR4302533.3432917/1‑94 (MQ=60)

                                         CTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCA                                                     >  SRR4302533.4042735/1‑94 (MQ=60)

                                          TCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCAT                                                    <  SRR4302533.3097589/94‑1 (MQ=60)

                                            AACATTTTTACCTACCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGG                                                  <  SRR4302533.4992498/94‑1 (MQ=60)

                                             ACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGG                                                 >  SRR4302533.3501225/1‑94 (MQ=60)

                                                 TTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAA                                             <  SRR4302533.41420/94‑1 (MQ=60)

                                                  TTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAAT                                            <  SRR4302533.4992894/94‑1 (MQ=60)

                                                  TTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAAT                                            <  SRR4302533.3607224/94‑1 (MQ=60)

                                                   TTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATA                                           <  SRR4302533.1968503/94‑1 (MQ=60)

                                                    TACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATAT                                          >  SRR4302533.4240538/1‑94 (MQ=60)

                                                    TACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATAT                                          >  SRR4302533.5606072/1‑94 (MQ=60)

                                                       CTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCAC                                       >  SRR4302533.816249/1‑94 (MQ=60)

                                                       CTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCAC                                       >  SRR4302533.4529858/1‑94 (MQ=60)

                                                        TATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACG                                      <  SRR4302533.5039008/94‑1 (MQ=60)

                                                         ATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGC                                     <  SRR4302533.835158/94‑1 (MQ=60)

                                                         ATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGC                                     >  SRR4302533.291653/1‑94 (MQ=60)

                                                           CTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAG                                   <  SRR4302533.2696389/94‑1 (MQ=60)

                                                             TCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCG                                 <  SRR4302533.4028568/94‑1 (MQ=60)

                                                             TCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCG                                 <  SRR4302533.5515700/94‑1 (MQ=60)

                                                             TCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCG                                 <  SRR4302533.2851322/94‑1 (MQ=60)

                                                             TCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCG                                 <  SRR4302533.5694102/94‑1 (MQ=60)

                                                             TCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCG                                 <  SRR4302533.1975190/94‑1 (MQ=60)

                                                              CTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGA                                >  SRR4302533.950876/1‑94 (MQ=60)

                                                               TCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGAT                               >  SRR4302533.6257615/1‑94 (MQ=60)

                                                                CCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATA                              >  SRR4302533.6102176/1‑94 (MQ=60)

                                                                CCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATA                              >  SRR4302533.3971399/1‑94 (MQ=60)

                                                                 CAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATAT                             <  SRR4302533.1013443/94‑1 (MQ=60)

                                                                 CAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATAT                             >  SRR4302533.4764349/1‑94 (MQ=60)

                                                                 CAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATAT                             <  SRR4302533.5126834/94‑1 (MQ=60)

                                                                  AGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATT                            <  SRR4302533.5735235/94‑1 (MQ=60)

                                                                  AGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATT                            <  SRR4302533.1150968/94‑1 (MQ=60)

                                                                    CCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCA                          >  SRR4302533.5880913/1‑94 (MQ=60)

                                                                     CAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCAT                         >  SRR4302533.4940534/1‑94 (MQ=60)

                                                                     CAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCAT                         <  SRR4302533.2211518/94‑1 (MQ=60)

                                                                     CAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCAT                         <  SRR4302533.2562852/94‑1 (MQ=60)

                                                                     CAGAACTCGGTGCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCAT                         <  SRR4302533.4469810/94‑1 (MQ=60)

                                                                      AGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATC                        <  SRR4302533.1547160/94‑1 (MQ=60)

                                                                      AGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATC                        >  SRR4302533.5569551/1‑94 (MQ=60)

                                                                       GAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCA                       <  SRR4302533.1194172/94‑1 (MQ=60)

                                                                       GAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCA                       <  SRR4302533.2276003/94‑1 (MQ=60)

                                                                         ACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAAC                     <  SRR4302533.5746182/94‑1 (MQ=60)

                                                                          CTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACG                    >  SRR4302533.1717298/1‑94 (MQ=60)

                                                                            CGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGAC                  >  SRR4302533.774465/1‑94 (MQ=60)

                                                                            CGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGAC                  <  SRR4302533.2005382/94‑1 (MQ=60)

                                                                             GGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACA                 >  SRR4302533.1363513/1‑94 (MQ=60)

                                                                             GGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACA                 >  SRR4302533.2167520/1‑94 (MQ=60)

                                                                             GGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACA                 >  SRR4302533.2427152/1‑94 (MQ=60)

                                                                              GTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAA                >  SRR4302533.4408383/1‑94 (MQ=60)

                                                                                 CGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAAT             >  SRR4302533.3181298/1‑94 (MQ=60)

                                                                                 CGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGAAGCCAGAAGCAGCCATGGGaaatattcccgcacgaatttcaacaacgaacaaaac             >  SRR4302533.5340268/1‑58 (MQ=60)

                                                                                  GAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATC            >  SRR4302533.2379552/1‑94 (MQ=60)

                                                                                   AGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCC           <  SRR4302533.4944242/94‑1 (MQ=60)

                                                                                    GTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCG          >  SRR4302533.4930908/1‑94 (MQ=60)

                                                                                    GTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCG          <  SRR4302533.732611/94‑1 (MQ=60)

                                                                                     TCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGG         <  SRR4302533.5834701/94‑1 (MQ=60)

                                                                                     TCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGG         <  SRR4302533.5470452/94‑1 (MQ=60)

                                                                                      CGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGA        >  SRR4302533.5542800/1‑94 (MQ=60)

                                                                                       GCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGAC       <  SRR4302533.3835185/94‑1 (MQ=60)

                                                                                       GCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGAC       <  SRR4302533.3216282/94‑1 (MQ=60)

                                                                                       GCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGAC       <  SRR4302533.2877173/94‑1 (MQ=60)

                                                                                       GCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGAC       <  SRR4302533.2324248/94‑1 (MQ=60)

                                                                                        CAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGACG      <  SRR4302533.1056352/94‑1 (MQ=60)

                                                                                        CAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGACG      >  SRR4302533.3172475/1‑94 (MQ=60)

                                                                                        CAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGACG      >  SRR4302533.616321/1‑94 (MQ=60)

                                                                                        CAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGACG      >  SRR4302533.1268678/1‑94 (MQ=60)

                                                                                         AGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGACGT     >  SRR4302533.4078679/1‑94 (MQ=60)

                                                                                         AGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGACGT     >  SRR4302533.1219285/1‑94 (MQ=60)

                                                                                         AGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGACGT     >  SRR4302533.6187615/1‑94 (MQ=60)

                                                                                         AGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATAAACGACAAAATCCGGACGT     <  SRR4302533.6112194/94‑1 (MQ=60)

                                                                                          GGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGACGTC    <  SRR4302533.2083564/94‑1 (MQ=60)

                                                                                          GGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGACGTC    >  SRR4302533.3271512/1‑94 (MQ=60)

                                                                                            CGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAACATCCGGACGTCCG  >  SRR4302533.6194603/1‑94 (MQ=60)

                                                                                            CGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGACGTCCG  <  SRR4302533.1392069/94‑1 (MQ=60)

CAGCCGAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCACTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGACGTCCG  >  NC_000913/2028615‑2028800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`