Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,030,706 |
(C)5→6 |
coding (396/696 nt) |
yedJ ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,030,701 | 1 | . | C | 97.2%
| 541.7
/ 7.9
| 177 | coding (401/696 nt) | yedJ | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (3/2); new base C (93/79); total (96/81) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.07e-01 |
Only 100 of 219 total aligned reads displayed.
AAGCGGGCGATGCTGTGCGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑G‑CCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGAGCGG > NC_000913/2030610‑2030788
|
aaGCGGGCGATGCTGTGCGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGGAAACACGCGCGCCAGGCCAATC‑G‑c > 1:3926283/1‑93 (MQ=255)
aaGCGGGCGATGCTGTGCGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑G‑c > 1:3941687/1‑93 (MQ=255)
aaGCGGGCGATGCTGTGCGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑G‑c > 2:642756/1‑93 (MQ=255)
aaGCGGGCGATGCTGTGCGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCACGCCAATC‑G‑c > 1:3827265/1‑93 (MQ=255)
aGCGGGCGATGCTGTGCGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑G‑cc > 1:1056735/1‑93 (MQ=255)
aGCGGGCGATGCTGTGCGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑G‑cc > 2:1253644/1‑93 (MQ=255)
gggCGATGCTGTGCGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑G‑ccccc < 1:5029123/93‑1 (MQ=255)
gggCGATGCTGTGCGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑G‑ccccc > 2:161444/1‑93 (MQ=255)
gCGATGCTGTGCGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑G‑cccccca < 2:4528603/93‑3 (MQ=255)
cGATGCTGTGCGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑G‑ccccccag < 2:101578/93‑4 (MQ=255)
cGATGCTGTGCGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑G‑ccccccag < 2:254915/93‑4 (MQ=255)
cGATGCTGTGCGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑G‑ccccccag < 1:1458926/93‑4 (MQ=255)
gATGCTGTGCGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑G‑ccccccagg < 2:4353165/93‑5 (MQ=255)
gCTGTGCGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCt < 2:797636/93‑1 (MQ=255)
cTGTGCGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCtt > 1:6043419/1‑93 (MQ=255)
gtgCGAACGGATCTTCACCATCAAGCAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTcc < 2:3427823/93‑1 (MQ=255)
cGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGc > 2:206745/1‑93 (MQ=255)
gAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGcc > 1:41950/1‑93 (MQ=255)
gAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGcc > 1:2689095/1‑93 (MQ=255)
aaCGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCg > 1:5169476/1‑93 (MQ=255)
aaCGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCg > 2:3355380/1‑93 (MQ=255)
aaCGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCg > 1:2070962/1‑93 (MQ=255)
aaCGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCg > 1:5400108/1‑93 (MQ=255)
aCGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGa < 2:5690620/93‑1 (MQ=255)
cagATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGAt > 2:2847944/3‑93 (MQ=255)
cGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGAt > 2:4753191/1‑93 (MQ=255)
ggATCTTCACCATCAAACAGCGCCACGCCCAATTCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATc < 2:248535/93‑1 (MQ=255)
ggATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATc < 1:469267/93‑1 (MQ=255)
ggATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATc > 1:156517/1‑93 (MQ=255)
cgATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATc < 1:5232586/92‑1 (MQ=255)
aTCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCg > 2:5076260/1‑93 (MQ=255)
tCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGc > 2:1343416/1‑93 (MQ=255)
tCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGc > 2:5233485/1‑93 (MQ=255)
tCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGc > 2:61740/1‑93 (MQ=255)
tCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGc > 1:1213231/1‑93 (MQ=255)
cTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCa > 2:5112594/1‑93 (MQ=255)
cACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATcc < 1:3105974/93‑1 (MQ=255)
ccATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTg < 2:4301735/93‑1 (MQ=255)
ccATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTg < 1:5633204/93‑1 (MQ=255)
cagcAAGCAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTgg < 2:1991613/90‑1 (MQ=255)
cATCAAACATCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCATGCCAATC‑GCCCCCCAGCGCTTCCAGCCGATCCGCATGCTgg > 1:1311258/1‑93 (MQ=255)
cATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGACAATC‑GCCCCCCAGGGCTTCCAGACGATTCGCATCCTgg > 1:840888/1‑93 (MQ=255)
aTCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGa < 2:3083364/93‑1 (MQ=255)
tCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGAc > 1:2616190/1‑93 (MQ=255)
cAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAAttt < 2:5556780/93‑1 (MQ=255)
cAGCGCCACGCCCAAGGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAAttt < 1:187026/93‑1 (MQ=255)
aGCGCCACGCCCAATCCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAAtttt < 1:357855/93‑1 (MQ=255)
gcCACTCCCAATTCCCCTGAAACGGCAACCACGCGCGCCAGGCCAATCAC‑CCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGc < 1:4871463/93‑1 (MQ=255)
gcCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGc > 2:4021042/1‑93 (MQ=255)
gcCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGc > 1:2808839/1‑93 (MQ=255)
gcCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGc < 2:4259787/93‑1 (MQ=255)
ccGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTc < 1:2983668/92‑1 (MQ=255)
cGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGACAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTcc > 1:717576/1‑93 (MQ=255)
cAATGCCCCTGAAACGGCAAACACGCGCGCCAGGGCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCCTCCTGGACAATTTTAGCTTCCgttg > 2:3130178/1‑93 (MQ=255)
cAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCgttg > 1:1755221/1‑93 (MQ=255)
aaTGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCgttgt < 2:839709/93‑1 (MQ=255)
aTGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCgttgtt > 1:4468603/1‑93 (MQ=255)
tGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTa > 2:3250183/1‑93 (MQ=255)
gCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTaa < 1:3372080/93‑1 (MQ=255)
gCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTaa < 2:5986368/93‑1 (MQ=255)
cccTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAgg < 1:5334187/93‑1 (MQ=255)
cccTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGACGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAgg > 1:1422449/1‑93 (MQ=255)
ccTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAggg > 2:602806/1‑93 (MQ=255)
ccTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAggg < 1:2519461/93‑1 (MQ=255)
cTGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGATTCCCGCCGCTCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAgggg > 2:2611311/1‑93 (MQ=255)
tGAAACGGCAACCACGCGCGCCAGCCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAggggg < 1:4103929/93‑1 (MQ=255)
tGAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAggggg < 2:584129/93‑1 (MQ=255)
gAAACGGCAACCCCGCGCGCCAGCCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGc < 2:2239808/93‑1 (MQ=255)
gAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGc < 2:4046238/93‑1 (MQ=255)
gAAACGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGc < 1:4003437/93‑1 (MQ=255)
aaaCGGCAAACACGCGCGCCATGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCg > 1:4951253/1‑93 (MQ=255)
aaaCGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCg > 2:5312880/1‑93 (MQ=255)
aCGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGAt < 1:3577152/93‑1 (MQ=255)
aCGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGAt < 2:1803504/93‑1 (MQ=255)
aCGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGAt < 2:4891977/93‑1 (MQ=255)
aCGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGAt < 1:946623/93‑1 (MQ=255)
cGGCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGAtt < 1:6219149/93‑1 (MQ=255)
ggCAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGAttt > 1:1146747/1‑93 (MQ=255)
cAAACACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTgc < 1:5908333/93‑1 (MQ=255)
aaaCACGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTgcg > 2:4791940/1‑93 (MQ=255)
cacGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTgcgcgc > 2:397877/1‑93 (MQ=255)
acGCGCGCCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCt < 1:439833/93‑1 (MQ=255)
ccgcccCAGGCCAACC‑GCCCCCCAGTGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGa < 2:3703209/92‑1 (MQ=255)
gcgcCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGaaa < 2:6100089/93‑1 (MQ=255)
cgcCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAAc < 2:1949505/93‑1 (MQ=255)
cgcCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAAc < 1:2141066/93‑1 (MQ=255)
cgcCAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAAc < 1:2050508/93‑1 (MQ=255)
ccAGGCGATTC‑GCCCCCCAGGCCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACtg < 2:1574122/93‑1 (MQ=255)
ccAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACtg > 2:3157616/1‑93 (MQ=255)
cAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACtgt > 2:92289/1‑93 (MQ=255)
cAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACtgt < 2:277175/93‑1 (MQ=255)
cAGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTAGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACtgt > 1:3382725/1‑93 (MQ=255)
aGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACtgtg > 2:4619118/1‑93 (MQ=255)
aGGCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACtgtg > 2:151174/1‑93 (MQ=255)
ggCCAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGa > 1:2373228/1‑93 (MQ=255)
ccAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGAGc < 2:3833999/93‑1 (MQ=255)
ccAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGAGc < 1:3333699/93‑1 (MQ=255)
cAATC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGAGCg > 2:4655299/1‑93 (MQ=255)
aaTC‑GCCCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGAGCgg < 2:3062408/93‑1 (MQ=255)
aaTC‑GCCCCCCAGGGCCTCCAGCCGATCAGAATCCTGGACAATTTTAGCCTCCGTTGTTTAGGGGGCGAGCTGCGAGCTGAGACTATGAGCgg > 2:1733870/1‑93 (MQ=255)
|
AAGCGGGCGATGCTGTGCGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATC‑G‑CCCCCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGAGCGG > NC_000913/2030610‑2030788
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGGGCGATGCTGTGCGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑G‑C‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGAGCGGCAATGGCATGA > NC_000913/2030613‑2030799
|
CGGGCGATGCTGTGCGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑G‑C‑C‑CC‑C > SRR4302533.4534899/1‑94 (MQ=60)
GGGCGATGCTGTGCGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑G‑C‑C‑CC‑CC < SRR4302533.5059573/94‑1 (MQ=60)
GGATGCTGTGCGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGG < SRR4302533.3549064/94‑1 (MQ=60)
CGATGCTGTGCGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCCAT‑CAC‑C‑C‑CC‑CAGG > SRR4302533.2152387/1‑94 (MQ=60)
CGATGCTGTGCGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGG < SRR4302533.1467721/94‑1 (MQ=60)
CGATGCTGTGCGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGG < SRR4302533.6085389/94‑1 (MQ=60)
CGATGCTGTGCGAACAGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGG < SRR4302533.5399283/94‑1 (MQ=60)
ATGCTGTGCGAACGGATCTTCACCATCAACCAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATCC‑C‑C‑C‑CC‑CAGGGC < SRR4302533.97668/94‑1 (MQ=60)
GCTGTGCGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTT > SRR4302533.6080032/1‑94 (MQ=60)
TGTGCAAACTGATCTACACCATCAAACAGCGCCACGCCCAATGCCCCGGAAACGGCAAACACGCGCTCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCC < SRR4302533.468771/94‑1 (MQ=60)
CGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCC > SRR4302533.42235/1‑94 (MQ=60)
CGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCC < SRR4302533.1496734/94‑1 (MQ=60)
CGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCC > SRR4302533.2705580/1‑94 (MQ=60)
GAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCG > SRR4302533.5432556/1‑94 (MQ=60)
GAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCG < SRR4302533.5310095/94‑1 (MQ=60)
GAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCG > SRR4302533.5200678/1‑94 (MQ=60)
GAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCG > SRR4302533.2083717/1‑94 (MQ=60)
ACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGAT < SRR4302533.161937/94‑1 (MQ=60)
CGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATC > SRR4302533.157514/1‑94 (MQ=60)
CGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATC < SRR4302533.2148450/94‑1 (MQ=60)
GGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCC < SRR4302533.1273531/94‑1 (MQ=60)
GGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCC < SRR4302533.472070/94‑1 (MQ=60)
CGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCC < SRR4302533.5264055/94‑1 (MQ=60)
ATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGC > SRR4302533.1220524/1‑94 (MQ=60)
ATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGC > SRR4302533.279362/1‑94 (MQ=60)
TCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCC < SRR4302533.4830741/94‑1 (MQ=60)
CACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCT < SRR4302533.3125065/94‑1 (MQ=60)
CACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCT < SRR4302533.3125063/94‑1 (MQ=60)
ACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTG < SRR4302533.2101398/94‑1 (MQ=60)
ACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTG > SRR4302533.794042/1‑94 (MQ=60)
CCATCAAACATCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCATGCCAAT‑C‑GCC‑C‑CC‑CAGCGCTTCCAGCCGATCCGCATGCTGG > SRR4302533.1319130/1‑94 (MQ=60)
CCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGG < SRR4302533.5667269/94‑1 (MQ=60)
CCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGACAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGACGATTCGCATCCTGG > SRR4302533.845806/1‑94 (MQ=60)
ATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGAC > SRR4302533.2632247/1‑94 (MQ=60)
CAGCGCCACGCCCAAGGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTT < SRR4302533.188188/94‑1 (MQ=60)
AGCGCCACGCCCAATCCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTA < SRR4302533.360034/94‑1 (MQ=60)
CGCCCCGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGC < SRR4302533.4201780/94‑1 (MQ=60)
CGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGC > SRR4302533.2826124/1‑94 (MQ=60)
GCCACTCCCAATTCCCCTGAAACGGCAACCACGCGCGCCAGGCCAAT‑CAC‑C‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCT < SRR4302533.4900983/94‑1 (MQ=60)
CCGCCCAATGCCCCTGAAACGGCAAACCCGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCC < SRR4302533.2495337/94‑1 (MQ=60)
CCGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCC < SRR4302533.3001918/94‑1 (MQ=60)
CCGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCC < SRR4302533.4686330/94‑1 (MQ=60)
ACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGACAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCC > SRR4302533.721810/1‑94 (MQ=60)
CGCTCAATGCCCCGGAAACGGCAAACACGCGCGCCAGGCCAAT‑CTC‑C‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCG < SRR4302533.4932768/94‑1 (MQ=60)
CCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGT < SRR4302533.3736386/94‑1 (MQ=60)
CCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAATCC‑C‑C‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTT < SRR4302533.2673484/94‑1 (MQ=60)
CCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTT > SRR4302533.3563154/1‑94 (MQ=60)
CCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTG > SRR4302533.1448893/1‑94 (MQ=60)
CCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTG > SRR4302533.1765912/1‑94 (MQ=60)
CCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTG < SRR4302533.133334/94‑1 (MQ=60)
CCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTG > SRR4302533.292416/1‑94 (MQ=60)
AATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTT > SRR4302533.4495630/1‑94 (MQ=60)
AATGACCCTGAAACGGCAAACACGCGCTCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTT < SRR4302533.3294874/94‑1 (MQ=60)
ATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑G‑C‑C‑CCTCAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTA > SRR4302533.4467679/1‑94 (MQ=60)
TGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAA < SRR4302533.5976136/94‑1 (MQ=60)
GCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAG < SRR4302533.3392904/94‑1 (MQ=60)
GCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑G‑C‑CGCC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAG > SRR4302533.3600379/1‑94 (MQ=60)
CCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGACGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGG > SRR4302533.1431047/1‑94 (MQ=60)
CCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGG < SRR4302533.5366161/94‑1 (MQ=60)
CCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGG < SRR4302533.2534984/94‑1 (MQ=60)
CCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGG > SRR4302533.4012587/1‑94 (MQ=60)
CTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGG > SRR4302533.2710898/1‑94 (MQ=60)
CTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGG < SRR4302533.6167590/94‑1 (MQ=60)
TGAAACGGCAACCACGCGCGCCAGCCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGC < SRR4302533.4128893/94‑1 (MQ=60)
GAAACGGCAAACACGCGCGCCATGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCG > SRR4302533.4981238/1‑94 (MQ=60)
GAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCG < SRR4302533.4027813/94‑1 (MQ=60)
AAACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGA > SRR4302533.4029707/1‑94 (MQ=60)
ACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATT < SRR4302533.952187/94‑1 (MQ=60)
ACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATT < SRR4302533.3599197/94‑1 (MQ=60)
ACGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATT > SRR4302533.5601099/1‑94 (MQ=60)
CGGCAAACTCGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTT < SRR4302533.5789451/94‑1 (MQ=60)
CGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTT < SRR4302533.6256435/94‑1 (MQ=60)
CGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTT < SRR4302533.3367241/94‑1 (MQ=60)
CGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTT < SRR4302533.2072898/94‑1 (MQ=60)
CGGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTT > SRR4302533.1153591/1‑94 (MQ=60)
GGCAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTG > SRR4302533.1533182/1‑94 (MQ=60)
GGCAAACACGCCCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGCCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTG < SRR4302533.3974433/94‑1 (MQ=60)
CAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCG < SRR4302533.5944023/94‑1 (MQ=60)
CAAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCG > SRR4302533.187859/1‑94 (MQ=60)
AAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGC > SRR4302533.2005206/1‑94 (MQ=60)
AAACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGC > SRR4302533.2213455/1‑94 (MQ=60)
AACACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCG < SRR4302533.632107/94‑1 (MQ=60)
ACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTG > SRR4302533.2604936/1‑94 (MQ=60)
ACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTG > SRR4302533.1219007/1‑94 (MQ=60)
ACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTG > SRR4302533.5250778/1‑94 (MQ=60)
ACGCGCGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTG < SRR4302533.442457/94‑1 (MQ=60)
CGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACT < SRR4302533.2063159/94‑1 (MQ=60)
CGCCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACT < SRR4302533.2154263/94‑1 (MQ=60)
CCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGAGCGCTGAAAATGT > SRR4302533.3938040/1‑94 (MQ=60)
CCAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTAGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGT > SRR4302533.3403607/1‑94 (MQ=60)
CAGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTG > SRR4302533.4991380/1‑94 (MQ=60)
AGGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGA > SRR4302533.2387915/1‑94 (MQ=60)
GGCCAAT‑C‑GCC‑C‑CC‑CAGGGTTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGAG < SRR4302533.5247155/94‑1 (MQ=60)
GGCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGAG < SRR4302533.5101783/94‑1 (MQ=60)
GCCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGAGC < SRR4302533.3957674/94‑1 (MQ=60)
CCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGAGCG > SRR4302533.4281368/1‑94 (MQ=60)
CCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGAGCG > SRR4302533.957704/1‑94 (MQ=60)
CCAAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGAGCG < SRR4302533.3354297/94‑1 (MQ=60)
CAAT‑C‑G‑CTC‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGAGCGG < SRR4302533.1078314/94‑1 (MQ=60)
AAT‑C‑GCC‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGAGCGGC > SRR4302533.1677650/1‑94 (MQ=60)
C‑C‑C‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGAGCGGCAATG < SRR4302533.4438860/94‑1 (MQ=60)
C‑C‑C‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGAGCGGCAATG < SRR4302533.3228860/94‑1 (MQ=60)
C‑C‑CC‑CAGGTCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGAGCGGCAATGGC < SRR4302533.4924806/94‑1 (MQ=60)
C‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGAGCGGCAATGGC > SRR4302533.2069650/1‑94 (MQ=60)
C‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGAGCGGCAATGGA > SRR4302533.594000/1‑94 (MQ=60)
C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGCTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGAGCGGCAATGGat > SRR4302533.2144126/1‑92 (MQ=60)
CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGAGCGGCAATGGCAT > SRR4302533.3778082/1‑94 (MQ=60)
CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGAGCGGCAATGGCAT > SRR4302533.2094149/1‑94 (MQ=60)
CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATATTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGAGCGGCAATGGCAT > SRR4302533.3478049/1‑94 (MQ=60)
CAGGGCTCCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGAGCGGCAATGGCATGA < SRR4302533.2285401/94‑1 (MQ=60)
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CGGGCGATGCTGTGCGAACGGATCTTCACCATCAAACAGCGCCACGCCCAATGCCCCTGAAACGGCAAACACGCGCGCCAGGCCAAT‑C‑G‑C‑C‑CC‑CAGGGCTTCCAGCCGATCCGCATCCTGGACAATTTTAGCTTCCGTTGTTAAGGGGGCGATTTGCGCGCTGAAACTGTGAGCGGCAATGGCATGA > NC_000913/2030613‑2030799
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
