Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,063,343 T→C A148A (GCA→GCG)  cobU ← cobinamide kinase/cobinamide phosphate guanylyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,063,3430TC100.0% 696.9 / NA 217A148A (GCA→GCG) cobUcobinamide kinase/cobinamide phosphate guanylyltransferase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (115/102);  total (115/102)

Only 100 of 221 total aligned reads displayed.

CTCCAATACCCGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGTGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTGGCAGGCAGCAATCAA  >  NC_000913/2063255‑2063432
                                                                                        |                                                                                         
cTCCAATCCCCGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCa                                                                                       <  2:1709145/93‑1 (MQ=255)
 tCCAATACCCGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAg                                                                                      >  1:4545140/1‑93 (MQ=255)
 tCCAATACCCGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAg                                                                                      >  2:5596753/1‑93 (MQ=255)
 tCCAATACCCGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAg                                                                                      >  1:1501650/1‑93 (MQ=255)
  ccAATACCCGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAga                                                                                     <  2:6248312/93‑1 (MQ=255)
   cAATACCCGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAgac                                                                                    <  1:34976/93‑1 (MQ=255)
    aaTACCCGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAgacg                                                                                   >  2:1800507/1‑93 (MQ=255)
     aTACCCGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAgacga                                                                                  >  2:56553/1‑93 (MQ=255)
      tccccGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAgacgac                                                                                 <  1:3151193/91‑1 (MQ=255)
        cccGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGActc                                                                               <  2:5974353/93‑1 (MQ=255)
         ccGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGActct                                                                              >  1:5530312/1‑93 (MQ=255)
           gAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTcc                                                                            >  2:1138784/1‑93 (MQ=255)
           gAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTcc                                                                            >  1:3582925/1‑93 (MQ=255)
           gAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTcc                                                                            >  2:3640072/1‑93 (MQ=255)
            aaaCCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCg                                                                           <  1:4809743/93‑1 (MQ=255)
            aaaCCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCg                                                                           <  1:5738968/93‑1 (MQ=255)
               ccaccaGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGAATCTCCGGca                                                                        >  2:662216/1‑93 (MQ=255)
                caccaGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGcac                                                                       <  1:2069616/93‑1 (MQ=255)
                 accaGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGcaca                                                                      >  1:2574569/1‑93 (MQ=255)
                  ccaGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACaa                                                                     >  2:6146587/1‑93 (MQ=255)
                   caGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAAt                                                                    >  2:6231174/1‑93 (MQ=255)
                     gCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATcc                                                                  >  2:5403081/1‑93 (MQ=255)
                      ccATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATccc                                                                 >  1:5304095/1‑93 (MQ=255)
                       cATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATcccc                                                                >  1:4128504/1‑93 (MQ=255)
                       cATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATcccc                                                                >  1:6260919/1‑93 (MQ=255)
                       cATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATcccc                                                                <  2:3938275/93‑1 (MQ=255)
                        aTACTTCATTTTCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCGGACGACTCTCCGTCACAAGCCGCa                                                               >  2:4153926/1‑93 (MQ=255)
                        aTACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCa                                                               <  1:2777769/93‑1 (MQ=255)
                        aTACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCa                                                               <  2:2203875/93‑1 (MQ=255)
                          aCTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCAtt                                                             <  2:1925585/93‑1 (MQ=255)
                          aCTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCAtt                                                             >  1:109931/1‑93 (MQ=255)
                           cTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTc                                                            >  1:2277310/1‑93 (MQ=255)
                              cATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCa                                                         <  2:2144222/93‑1 (MQ=255)
                              cATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCa                                                         <  1:687872/93‑1 (MQ=255)
                               aTTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCAc                                                        >  1:1435332/1‑93 (MQ=255)
                               aTTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATAGCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCAc                                                        >  1:2918360/1‑93 (MQ=255)
                                  tGCCGCTGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTc                                                     >  1:4406880/1‑93 (MQ=255)
                                   gCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCg                                                    <  1:1280925/93‑1 (MQ=255)
                                    ccGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGt                                                   <  2:4227875/93‑1 (MQ=255)
                                     cGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGtt                                                  <  1:2659288/93‑1 (MQ=255)
                                      gCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTa                                                 <  2:3493054/93‑1 (MQ=255)
                                      gCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTa                                                 <  2:2242028/93‑1 (MQ=255)
                                      gCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTa                                                 >  1:5848517/1‑93 (MQ=255)
                                      gCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTa                                                 >  2:2773393/1‑93 (MQ=255)
                                      ccAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTa                                                 <  1:3996616/92‑1 (MQ=255)
                                        aGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGt                                               >  2:4889200/1‑93 (MQ=255)
                                        aGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGt                                               <  1:3817011/93‑1 (MQ=255)
                                        aGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGt                                               >  2:1460021/1‑93 (MQ=255)
                                         gCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTc                                              >  1:719531/1‑93 (MQ=255)
                                         gCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTc                                              <  1:4400124/93‑1 (MQ=255)
                                         gCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTc                                              <  1:2109231/93‑1 (MQ=255)
                                            gCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACt                                           >  2:5774587/1‑93 (MQ=255)
                                            gCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACt                                           <  1:411279/93‑1 (MQ=255)
                                             ccAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTa                                          <  2:2874646/93‑1 (MQ=255)
                                               aaCTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAAt                                        >  1:6035991/1‑93 (MQ=255)
                                                  tgctgATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACa                                     <  1:2222510/93‑1 (MQ=255)
                                                  tgctgATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACa                                     >  2:302567/1‑93 (MQ=255)
                                                   gctgATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACaa                                    >  2:2567313/1‑93 (MQ=255)
                                                   gctgATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACaa                                    >  2:433714/1‑93 (MQ=255)
                                                   gctgATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACaa                                    >  1:3012511/1‑93 (MQ=255)
                                                   gctgATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACaa                                    >  2:3834718/1‑93 (MQ=255)
                                                   gctgATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACaa                                    >  2:4260842/1‑93 (MQ=255)
                                                    ctgATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAAc                                   <  1:3416725/93‑1 (MQ=255)
                                                       aTTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCtt                                <  1:1716904/93‑1 (MQ=255)
                                                       aTTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCtt                                >  1:58719/1‑93 (MQ=255)
                                                       aTTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCtt                                <  1:1792789/93‑1 (MQ=255)
                                                        tttACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCttt                               >  1:1843217/1‑93 (MQ=255)
                                                        tttACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCttt                               >  2:5315591/1‑93 (MQ=255)
                                                          tACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGc                             <  1:1986693/93‑1 (MQ=255)
                                                           tcccgcccgGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCg                            <  2:4928435/92‑1 (MQ=255)
                                                           aCCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCg                            <  1:1943640/93‑1 (MQ=255)
                                                             ccgcccgGCAATATCGCGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCggg                          >  2:2652141/1‑93 (MQ=255)
                                                             ccgcccgGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCggg                          <  2:409766/93‑1 (MQ=255)
                                                              cgcccgGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACAAATACAACCTTTGCgggg                         <  1:3628165/93‑1 (MQ=255)
                                                               gcccgGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGc                        >  2:2431675/1‑93 (MQ=255)
                                                               gcccgGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGc                        <  1:2346876/93‑1 (MQ=255)
                                                               gcccgGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGc                        <  2:4093301/93‑1 (MQ=255)
                                                                cccgGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCa                       >  1:453129/1‑93 (MQ=255)
                                                                   ggCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACg                    <  2:2044731/93‑1 (MQ=255)
                                                                    gCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGt                   >  2:4437650/1‑93 (MQ=255)
                                                                    gCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGt                   >  1:3738778/1‑93 (MQ=255)
                                                                    gCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGt                   <  1:4051495/93‑1 (MQ=255)
                                                                      aaTATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTg                 <  2:4120281/93‑1 (MQ=255)
                                                                      aaTATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTg                 >  2:3282228/1‑93 (MQ=255)
                                                                       atatCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTgg                >  1:1159682/1‑93 (MQ=255)
                                                                       atatCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTgg                <  1:1051739/93‑1 (MQ=255)
                                                                       atatCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTgg                >  2:3133987/1‑93 (MQ=255)
                                                                       atatCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTgg                >  2:2515323/1‑93 (MQ=255)
                                                                       atatCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTgg                >  1:5114612/1‑93 (MQ=255)
                                                                        tatCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTggc               <  2:2342146/93‑1 (MQ=255)
                                                                            aCGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCCCTAATACAACCTTTGCGGGGCAACGTTggcaggc           >  1:4196622/1‑93 (MQ=255)
                                                                            aCGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTggcaggc           <  2:4731264/93‑1 (MQ=255)
                                                                            aCGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTggcaggc           <  2:4309613/93‑1 (MQ=255)
                                                                            aCGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTggcaggc           >  1:1139991/1‑93 (MQ=255)
                                                                              gAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTGgcaggcag         >  2:3731282/1‑93 (MQ=255)
                                                                              gAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTGgcaggcag         >  2:51267/1‑93 (MQ=255)
                                                                               aaaaTGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTGGCAGgcagc        >  1:6110023/1‑93 (MQ=255)
                                                                                 aaTGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTGGCAGGCAGCaa      >  2:2609960/1‑93 (MQ=255)
                                                                                 aaTGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTGGCAGGCAGCaa      >  1:629203/1‑93 (MQ=255)
                                                                                  aTGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTGGCAGGCAGCAAt     >  1:5417716/1‑93 (MQ=255)
                                                                                        |                                                                                         
CTCCAATACCCGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGTGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTGGCAGGCAGCAATCAA  >  NC_000913/2063255‑2063432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTTTACTCCAATACCCGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGTGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTGGCAGGCAGCAATCAACGAC  >  NC_000913/2063250‑2063436
                                                                                             |                                                                                             
TTTTACTCCAATACCCGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGC                                                                                               >  SRR4302533.3104541/1‑94 (MQ=60)
 TTTACTCCAATACCCGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCG                                                                                              >  SRR4302533.2798254/1‑94 (MQ=60)
     CTCCAATACCCGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAG                                                                                          >  SRR4302533.4572666/1‑94 (MQ=60)
     CTCCAATACCCGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAG                                                                                          >  SRR4302533.6157312/1‑94 (MQ=60)
     CTCCAATACCCGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAG                                                                                          >  SRR4302533.1510702/1‑94 (MQ=60)
       CCAATCCCCGAACCCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGAC                                                                                        <  SRR4302533.2205315/94‑1 (MQ=60)
       CCAATACCCGAACCCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGAC                                                                                        <  SRR4302533.3671320/94‑1 (MQ=60)
        CAATACCCGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACG                                                                                       <  SRR4302533.35212/94‑1 (MQ=60)
        CAATACCCGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACG                                                                                       <  SRR4302533.1885041/94‑1 (MQ=60)
          ATACCCGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGAC                                                                                     >  SRR4302533.2064198/1‑94 (MQ=60)
          ATACCCGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGAC                                                                                     >  SRR4302533.3978914/1‑94 (MQ=60)
           TCCCCGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACT                                                                                    <  SRR4302533.3170567/94‑1 (MQ=60)
           TACCCGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACT                                                                                    >  SRR4302533.3547727/1‑94 (MQ=60)
           TACCCGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACT                                                                                    <  SRR4302533.4513287/94‑1 (MQ=60)
            ACCCGAAACCACCAGCCATACTTCATTTGCCGCAACGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTC                                                                                   >  SRR4302533.6178949/1‑94 (MQ=60)
             CCCGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCT                                                                                  >  SRR4302533.5563698/1‑94 (MQ=60)
              CCGAAACCCCCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTC                                                                                 <  SRR4302533.1126593/94‑1 (MQ=60)
              CCGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTC                                                                                 >  SRR4302533.1571065/1‑94 (MQ=60)
              CCGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTC                                                                                 >  SRR4302533.4626159/1‑94 (MQ=60)
               CGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCC                                                                                >  SRR4302533.5528595/1‑94 (MQ=60)
               CGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCC                                                                                >  SRR4302533.3604991/1‑94 (MQ=60)
               CGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCC                                                                                >  SRR4302533.2279912/1‑94 (MQ=60)
                GAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCG                                                                               <  SRR4302533.5032105/94‑1 (MQ=60)
                 AACCCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGG                                                                              <  SRR4302533.3503448/94‑1 (MQ=60)
                 AAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGG                                                                              <  SRR4302533.4838896/94‑1 (MQ=60)
                 AAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGG                                                                              <  SRR4302533.5773602/94‑1 (MQ=60)
                 AAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGG                                                                              >  SRR4302533.1213944/1‑94 (MQ=60)
                   ACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCA                                                                            <  SRR4302533.4206755/94‑1 (MQ=60)
                     CACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACA                                                                          <  SRR4302533.2082362/94‑1 (MQ=60)
                     CACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACA                                                                          >  SRR4302533.2590407/1‑94 (MQ=60)
                        CAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATC                                                                       <  SRR4302533.2760465/94‑1 (MQ=60)
                        CAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATC                                                                       <  SRR4302533.895954/94‑1 (MQ=60)
                         AGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCC                                                                      <  SRR4302533.264750/94‑1 (MQ=60)
                          GCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCC                                                                     >  SRR4302533.5335875/1‑94 (MQ=60)
                           CCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCC                                                                    >  SRR4302533.4153565/1‑94 (MQ=60)
                           CCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCC                                                                    >  SRR4302533.3467242/1‑94 (MQ=60)
                           CCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCC                                                                    >  SRR4302533.6298352/1‑94 (MQ=60)
                             ATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCAT                                                                  >  SRR4302533.4368458/1‑94 (MQ=60)
                             ATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCAT                                                                  >  SRR4302533.696241/1‑94 (MQ=60)
                             ATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCAT                                                                  <  SRR4302533.2794832/94‑1 (MQ=60)
                              TACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATT                                                                 <  SRR4302533.1104726/94‑1 (MQ=60)
                              TACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATT                                                                 <  SRR4302533.193765/94‑1 (MQ=60)
                              TACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATT                                                                 >  SRR4302533.110627/1‑94 (MQ=60)
                               CCTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTC                                                                <  SRR4302533.5889658/94‑1 (MQ=60)
                               ACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTC                                                                >  SRR4302533.2291413/1‑94 (MQ=60)
                                   CATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCAC                                                            <  SRR4302533.691940/94‑1 (MQ=60)
                                   CATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCAC                                                            <  SRR4302533.5693306/94‑1 (MQ=60)
                                   CATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCAC                                                            >  SRR4302533.1443996/1‑94 (MQ=60)
                                   CATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATAGCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCAC                                                            >  SRR4302533.2936246/1‑94 (MQ=60)
                                    ATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACT                                                           >  SRR4302533.2992010/1‑94 (MQ=60)
                                    ATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACT                                                           >  SRR4302533.4569366/1‑94 (MQ=60)
                                      TTGCCGCTGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTC                                                         >  SRR4302533.4433491/1‑94 (MQ=60)
                                      TTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTC                                                         <  SRR4302533.1492084/94‑1 (MQ=60)
                                        GCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGT                                                       <  SRR4302533.1288629/94‑1 (MQ=60)
                                          CGCAGCGGCCGAGTGCTGATTTGCCCGCCCGGCAATATCACGAAAATGTGGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTA                                                     <  SRR4302533.5954928/94‑1 (MQ=60)
                                          CGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTA                                                     >  SRR4302533.5883873/1‑94 (MQ=60)
                                          CGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTA                                                     >  SRR4302533.4326233/1‑94 (MQ=60)
                                          CGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTA                                                     <  SRR4302533.2675621/94‑1 (MQ=60)
                                           GCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAG                                                    <  SRR4302533.2483453/94‑1 (MQ=60)
                                           CCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAG                                                    <  SRR4302533.4020953/94‑1 (MQ=60)
                                            CAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGT                                                   <  SRR4302533.4023674/94‑1 (MQ=60)
                                             AGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTC                                                  <  SRR4302533.3840348/94‑1 (MQ=60)
                                             AGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTC                                                  >  SRR4302533.723776/1‑94 (MQ=60)
                                              GCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCA                                                 <  SRR4302533.4426691/94‑1 (MQ=60)
                                              GCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCA                                                 <  SRR4302533.2122243/94‑1 (MQ=60)
                                                GGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACT                                               >  SRR4302533.3979356/1‑94 (MQ=60)
                                                GGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACT                                               >  SRR4302533.3608059/1‑94 (MQ=60)
                                                 GCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTA                                              <  SRR4302533.413745/94‑1 (MQ=60)
                                                   CAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAAT                                            <  SRR4302533.485595/94‑1 (MQ=60)
                                                   CAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAAT                                            >  SRR4302533.6072570/1‑94 (MQ=60)
                                                   CAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAAT                                            >  SRR4302533.2104284/1‑94 (MQ=60)
                                                    AACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATA                                           >  SRR4302533.1788842/1‑94 (MQ=60)
                                                     ACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATAC                                          >  SRR4302533.4131862/1‑94 (MQ=60)
                                                       TGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAA                                        >  SRR4302533.1153699/1‑94 (MQ=60)
                                                       TGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAA                                        >  SRR4302533.284395/1‑94 (MQ=60)
                                                       TGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAA                                        <  SRR4302533.2236239/94‑1 (MQ=60)
                                                       TGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAA                                        >  SRR4302533.3030942/1‑94 (MQ=60)
                                                         CTGATTTACCCGCCCGGCAATATCACGAAAATGTTGCGCCAGACGACTCTCCCGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACC                                      >  SRR4302533.5676093/1‑94 (MQ=60)
                                                         CTGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACC                                      <  SRR4302533.3437835/94‑1 (MQ=60)
                                                          TGATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCT                                     >  SRR4302533.5821838/1‑94 (MQ=60)
                                                           GATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTT                                    >  SRR4302533.68001/1‑94 (MQ=60)
                                                           GATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTT                                    >  SRR4302533.59106/1‑94 (MQ=60)
                                                            ATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTT                                   >  SRR4302533.1854458/1‑94 (MQ=60)
                                                            ATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTT                                   <  SRR4302533.6139734/94‑1 (MQ=60)
                                                            ATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTT                                   <  SRR4302533.1803695/94‑1 (MQ=60)
                                                            ATTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTT                                   <  SRR4302533.1727312/94‑1 (MQ=60)
                                                             TTTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTG                                  <  SRR4302533.4148080/94‑1 (MQ=60)
                                                              TTACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGC                                 <  SRR4302533.3175358/94‑1 (MQ=60)
                                                               TACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCG                                <  SRR4302533.1998847/94‑1 (MQ=60)
                                                               TACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCG                                <  SRR4302533.3773752/94‑1 (MQ=60)
                                                                ACCCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGG                               <  SRR4302533.1955497/94‑1 (MQ=60)
                                                                  CCGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGG                             <  SRR4302533.6324166/94‑1 (MQ=60)
                                                                   CGCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACAAATACAACCTTTGCGGGGC                            <  SRR4302533.3650490/94‑1 (MQ=60)
                                                                    GCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCA                           >  SRR4302533.455839/1‑94 (MQ=60)
                                                                    GCCCGGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCA                           <  SRR4302533.2361399/94‑1 (MQ=60)
                                                                        GGCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGT                       >  SRR4302533.3761707/1‑94 (MQ=60)
                                                                         GCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTT                      <  SRR4302533.5335010/94‑1 (MQ=60)
                                                                         GCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTT                      <  SRR4302533.1425302/94‑1 (MQ=60)
                                                                         GCAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTT                      <  SRR4302533.4076172/94‑1 (MQ=60)
                                                                          CAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTG                     >  SRR4302533.5432723/1‑94 (MQ=60)
                                                                          CAATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTG                     >  SRR4302533.2901341/1‑94 (MQ=60)
                                                                           AATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTGG                    >  SRR4302533.1166641/1‑94 (MQ=60)
                                                                           AATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTGG                    >  SRR4302533.5145522/1‑94 (MQ=60)
                                                                            ATATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTGGC                   <  SRR4302533.1057931/94‑1 (MQ=60)
                                                                              ATCACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTGGCAG                 >  SRR4302533.2237338/1‑94 (MQ=60)
                                                                                CACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCCCTAATACAACCTTTGCGGGGCAACGTTGGCAGGC               >  SRR4302533.4222029/1‑94 (MQ=60)
                                                                                CACGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTGGCAGGC               >  SRR4302533.1146773/1‑94 (MQ=60)
                                                                                  CGAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTGGCAGGCAG             <  SRR4302533.3077525/94‑1 (MQ=60)
                                                                                   GAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTGGCAGGCAGC            >  SRR4302533.2291467/1‑94 (MQ=60)
                                                                                   GAAAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTGGCAGGCAGC            >  SRR4302533.6146906/1‑94 (MQ=60)
                                                                                     AAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTGGCAGGCAGCAA          >  SRR4302533.632904/1‑94 (MQ=60)
                                                                                     AAATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTGGCAGGCAGCAA          <  SRR4302533.4427359/94‑1 (MQ=60)
                                                                                      AATGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTGGCAGGCAGCAAT         >  SRR4302533.5450306/1‑94 (MQ=60)
                                                                                        TGTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTGGCAGGCAGCAATCA       >  SRR4302533.199754/1‑94 (MQ=60)
                                                                                         GTCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTGGCAGGCAGCAATCAA      <  SRR4302533.1825342/94‑1 (MQ=60)
                                                                                          TCGCGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTGGCAGGCAGCAATCAAC     <  SRR4302533.1351588/94‑1 (MQ=60)
                                                                                             CGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTGGCAGGCAGCAATCAACGAC  >  SRR4302533.599250/1‑94 (MQ=60)
                                                                                             CGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTGGCAGGCAGCAATCAACGAC  <  SRR4302533.5456071/94‑1 (MQ=60)
                                                                                             |                                                                                             
TTTTACTCCAATACCCGAAACCACCAGCCATACTTCATTTGCCGCAGCGGCCAACTGCTGATTTACCCGCCCGGCAATATCACGAAAATGTCGTGCCAGACGACTCTCCGGCACAATCCCCATTCCCACTTCGTTAGTCACTAATACAACCTTTGCGGGGCAACGTTGGCAGGCAGCAATCAACGAC  >  NC_000913/2063250‑2063436

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑