Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,066,300 T→C intergenic (‑957/‑330) trs56 ← / → b1995 IS5 transposase/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,066,3000TC100.0% 754.8 / NA 230intergenic (‑957/‑330)trs56/b1995IS5 transposase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (87/143);  total (87/143)

Only 100 of 230 total aligned reads displayed.

TCTGGCCATTAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGAC  >  NC_000913/2066210‑2066389
                                                                                          |                                                                                         
tctGGCCATTAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCt                                                                                         <  1:4804458/93‑1 (MQ=255)
tctGGCCATTAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCt                                                                                         <  2:5152617/93‑1 (MQ=255)
tctGGCCATTAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCt                                                                                         >  1:6203265/1‑93 (MQ=255)
  tGGCCATTAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTa                                                                                       >  2:3185702/1‑93 (MQ=255)
  tGGCCATTAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTa                                                                                       <  2:2545054/93‑1 (MQ=255)
   ggCCATTAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTAc                                                                                      >  1:5732528/1‑93 (MQ=255)
      cATTAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGc                                                                                   <  1:3515940/93‑1 (MQ=255)
       aTTAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCa                                                                                  >  1:599188/1‑93 (MQ=255)
       aTTAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCa                                                                                  >  1:3773406/1‑93 (MQ=255)
        ttAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCat                                                                                 >  2:1024961/1‑93 (MQ=255)
         tAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCata                                                                                >  1:4943042/1‑93 (MQ=255)
         tAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCata                                                                                <  2:3551054/93‑1 (MQ=255)
         tAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCata                                                                                >  2:2829139/1‑93 (MQ=255)
          agagTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCatat                                                                               <  2:898530/93‑1 (MQ=255)
          agagTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCatat                                                                               <  1:3647158/93‑1 (MQ=255)
          agagTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCatat                                                                               <  2:3850903/93‑1 (MQ=255)
           gagTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCAtata                                                                              <  2:1040822/93‑1 (MQ=255)
           gagTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCAtata                                                                              <  1:5681786/93‑1 (MQ=255)
            agTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATAc                                                                             <  2:573602/93‑1 (MQ=255)
             gTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACg                                                                            <  2:2450326/93‑1 (MQ=255)
             gTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACg                                                                            <  1:2869925/93‑1 (MQ=255)
             gTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACg                                                                            >  2:4466657/1‑93 (MQ=255)
             gTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACg                                                                            <  1:4282392/93‑1 (MQ=255)
              tAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACgg                                                                           >  2:2966954/1‑93 (MQ=255)
                  cTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCaa                                                                       >  1:6131747/1‑93 (MQ=255)
                  cTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCaa                                                                       >  1:4062995/1‑93 (MQ=255)
                  cTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCaa                                                                       >  1:5533539/1‑93 (MQ=255)
                   ttCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAAt                                                                      <  2:3998665/93‑1 (MQ=255)
                    tCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAAtt                                                                     <  2:2145871/93‑1 (MQ=255)
                    tCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAAtt                                                                     <  1:6283071/93‑1 (MQ=255)
                    tCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAAtt                                                                     <  1:1533297/93‑1 (MQ=255)
                    tCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAAtt                                                                     <  1:2777847/93‑1 (MQ=255)
                     cTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAAttt                                                                    >  1:180876/1‑93 (MQ=255)
                      tGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTc                                                                   >  1:3294666/1‑93 (MQ=255)
                      tGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTc                                                                   <  1:4195857/93‑1 (MQ=255)
                       gCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCa                                                                  <  2:328199/93‑1 (MQ=255)
                         aTTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGc                                                                <  1:4383804/93‑1 (MQ=255)
                         aTTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGc                                                                >  1:1860054/1‑93 (MQ=255)
                          ttCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCa                                                               >  2:4483504/1‑93 (MQ=255)
                           tCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCaa                                                              >  2:4908743/1‑93 (MQ=255)
                            cATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCaat                                                             <  2:2730925/93‑1 (MQ=255)
                            cATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCaat                                                             <  1:2391716/93‑1 (MQ=255)
                             aTCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCaatt                                                            <  2:2778451/93‑1 (MQ=255)
                             aTCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCaatt                                                            >  1:727587/1‑93 (MQ=255)
                             aTCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCaatt                                                            <  1:796128/93‑1 (MQ=255)
                              tCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCaatta                                                           >  2:4045594/1‑93 (MQ=255)
                              tCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCaatta                                                           >  2:2067983/1‑93 (MQ=255)
                                 ttttGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCaattaatt                                                        >  1:4719651/1‑93 (MQ=255)
                                   ttGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTAc                                                      <  2:3003391/93‑1 (MQ=255)
                                    tGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACa                                                     <  2:1595036/93‑1 (MQ=255)
                                    tGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACa                                                     <  1:5099918/93‑1 (MQ=255)
                                     gTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACAt                                                    >  1:6154063/1‑93 (MQ=255)
                                      tAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACAtt                                                   >  1:5260551/1‑93 (MQ=255)
                                          aaGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATcc                                               <  1:1471223/93‑1 (MQ=255)
                                           aGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCa                                              >  1:1168883/1‑93 (MQ=255)
                                           aGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCa                                              <  1:5419511/93‑1 (MQ=255)
                                            gTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCAc                                             <  1:1410233/93‑1 (MQ=255)
                                               tataTTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGcc                                          <  2:3378739/93‑1 (MQ=255)
                                               tataTTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGcc                                          >  2:2587405/1‑93 (MQ=255)
                                               tataTTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGcc                                          <  1:2924445/93‑1 (MQ=255)
                                                 tatTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCaa                                        >  1:6105137/1‑93 (MQ=255)
                                                  atTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCaaa                                       >  1:3491564/1‑93 (MQ=255)
                                                  atTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCaaa                                       >  1:3435272/1‑93 (MQ=255)
                                                   ttAGTATCAGCAATTAACCGGACCTGATACTGATATGCGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAg                                      >  2:5292230/1‑93 (MQ=255)
                                                   ttAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAg                                      >  1:4684973/1‑93 (MQ=255)
                                                   ttAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAg                                      <  1:5326725/93‑1 (MQ=255)
                                                   ttAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAg                                      <  2:4866857/93‑1 (MQ=255)
                                                   ttAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAg                                      >  2:5028127/1‑93 (MQ=255)
                                                   ttAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAg                                      <  1:2607104/93‑1 (MQ=255)
                                                   ttAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAg                                      <  2:5605501/93‑1 (MQ=255)
                                                     aGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTa                                    <  2:6038338/93‑1 (MQ=255)
                                                     aGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTa                                    <  2:1777610/93‑1 (MQ=255)
                                                      gTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTAt                                   <  1:3023472/93‑1 (MQ=255)
                                                      gTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTAt                                   >  2:1352660/1‑93 (MQ=255)
                                                       tATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTAtt                                  <  1:5890206/93‑1 (MQ=255)
                                                        aTCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTAttt                                 <  2:5221933/93‑1 (MQ=255)
                                                        aTCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTAttt                                 <  2:5412815/93‑1 (MQ=255)
                                                        aTCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTAttt                                 >  1:4038417/1‑93 (MQ=255)
                                                         tCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTg                                >  2:3447307/1‑93 (MQ=255)
                                                          cAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGt                               >  1:4364797/1‑93 (MQ=255)
                                                            gCAATTAGCCGGACCTGATACTGATATGAGCCTTACCTCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGtca                             <  2:4099690/93‑1 (MQ=255)
                                                             cAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGtcat                            <  1:686889/93‑1 (MQ=255)
                                                              aaTTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGtcatc                           <  2:4210221/93‑1 (MQ=255)
                                                              aaTTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGtcatc                           >  2:4234831/1‑93 (MQ=255)
                                                              aaTTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGtcatc                           <  2:6263096/93‑1 (MQ=255)
                                                                ttAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATcac                         >  1:6027094/1‑93 (MQ=255)
                                                                ttAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATcac                         <  1:4264780/93‑1 (MQ=255)
                                                                   aCCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAat                      >  1:1991294/1‑93 (MQ=255)
                                                                    ccGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAatg                     <  1:3911643/93‑1 (MQ=255)
                                                                    ccGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAatg                     <  2:4550534/93‑1 (MQ=255)
                                                                      ggACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAatgat                   <  2:1845337/93‑1 (MQ=255)
                                                                      ggACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAatgat                   <  1:3161426/93‑1 (MQ=255)
                                                                        aCCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATgg                 <  2:2258180/93‑1 (MQ=255)
                                                                        aCCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATgg                 <  1:3854269/93‑1 (MQ=255)
                                                                          ctgatactgataTGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTa               >  1:212154/1‑93 (MQ=255)
                                                                                ctgataTGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACcttct         >  2:1256713/1‑93 (MQ=255)
                                                                                 tgataTGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACcttctt        <  2:1055515/93‑1 (MQ=255)
                                                                                  gataTGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCttt       <  1:5162019/93‑1 (MQ=255)
                                                                                    tatGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCa     <  2:645169/93‑1 (MQ=255)
                                                                                    tatGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCa     >  1:174379/1‑93 (MQ=255)
                                                                                          |                                                                                         
TCTGGCCATTAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGAC  >  NC_000913/2066210‑2066389

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CACTCTGGCCATTAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACAC  >  NC_000913/2066207‑2066391
                                                                                             |                                                                                           
CACTCTGGCCATTAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTTATATGAGC                                                                                             <  SRR4302533.4894432/94‑1 (MQ=60)
  CTCTGGCCATTAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCT                                                                                           >  SRR4302533.6240468/1‑94 (MQ=60)
  CTCTGGCCATTAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCT                                                                                           >  SRR4302533.6134486/1‑94 (MQ=60)
   TCTGGCCATTAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTT                                                                                          <  SRR4302533.4833552/94‑1 (MQ=60)
    CTGGCCATTAGAGTAACCTTCTGCATTCATCCTTTNGTAAAAAGTTTATATNAGTATCAGCAANTANCCNNNNNNGATACNGATANGNGNCNNA                                                                                         >  SRR4302533.3147258/1‑94 (MQ=60)
    CTGGCCATTAGAGTAACCGTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTA                                                                                         <  SRR4302533.5549752/94‑1 (MQ=60)
     TGGCCATTAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTAC                                                                                        <  SRR4302533.2044504/94‑1 (MQ=60)
     TGGCCATTAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTAC                                                                                        <  SRR4302533.4251278/94‑1 (MQ=60)
     TGGCCATTAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTAC                                                                                        >  SRR4302533.5767136/1‑94 (MQ=60)
     TGGCCATTAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTAC                                                                                        <  SRR4302533.5582006/94‑1 (MQ=60)
        CCATTAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGC                                                                                     >  SRR4302533.68426/1‑94 (MQ=60)
         CATTAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCA                                                                                    >  SRR4302533.602715/1‑94 (MQ=60)
         CATTAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCA                                                                                    >  SRR4302533.3796537/1‑94 (MQ=60)
         CATTAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCA                                                                                    <  SRR4302533.3537616/94‑1 (MQ=60)
           TTAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATA                                                                                  >  SRR4302533.4972966/1‑94 (MQ=60)
            TAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAATTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATAT                                                                                 <  SRR4302533.2865415/94‑1 (MQ=60)
             AGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATA                                                                                <  SRR4302533.3669583/94‑1 (MQ=60)
              GAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATAC                                                                               <  SRR4302533.5716105/94‑1 (MQ=60)
              GAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATAC                                                                               <  SRR4302533.4082600/94‑1 (MQ=60)
              GAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATAC                                                                               <  SRR4302533.2690291/94‑1 (MQ=60)
               AGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACG                                                                              >  SRR4302533.1903564/1‑94 (MQ=60)
                GTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGG                                                                             <  SRR4302533.4308129/94‑1 (MQ=60)
                GTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGG                                                                             <  SRR4302533.2887584/94‑1 (MQ=60)
                 TAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGT                                                                            <  SRR4302533.363382/94‑1 (MQ=60)
                  AACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTC                                                                           <  SRR4302533.3989370/94‑1 (MQ=60)
                    CCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAA                                                                         >  SRR4302533.5566947/1‑94 (MQ=60)
                    CCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAA                                                                         >  SRR4302533.4087725/1‑94 (MQ=60)
                    CCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAA                                                                         >  SRR4302533.6168691/1‑94 (MQ=60)
                     CTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAAT                                                                        >  SRR4302533.4958709/1‑94 (MQ=60)
                      TTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATT                                                                       <  SRR4302533.5383002/94‑1 (MQ=60)
                      TTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATT                                                                       >  SRR4302533.1488377/1‑94 (MQ=60)
                       TCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTT                                                                      <  SRR4302533.2794911/94‑1 (MQ=60)
                       TCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTT                                                                      <  SRR4302533.6044999/94‑1 (MQ=60)
                       TCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTT                                                                      <  SRR4302533.1542507/94‑1 (MQ=60)
                       TCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTT                                                                      <  SRR4302533.6320566/94‑1 (MQ=60)
                       TCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTT                                                                      >  SRR4302533.182004/1‑94 (MQ=60)
                        CTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTC                                                                     <  SRR4302533.3186749/94‑1 (MQ=60)
                        CTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTC                                                                     >  SRR4302533.3314999/1‑94 (MQ=60)
                         TGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCA                                                                    <  SRR4302533.4221255/94‑1 (MQ=60)
                         TGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCA                                                                    <  SRR4302533.1701774/94‑1 (MQ=60)
                          GCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAG                                                                   >  SRR4302533.5339759/1‑94 (MQ=60)
                           CATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGC                                                                  >  SRR4302533.1871397/1‑94 (MQ=60)
                            ATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCA                                                                 <  SRR4302533.4410272/94‑1 (MQ=60)
                            ATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCA                                                                 <  SRR4302533.3006944/94‑1 (MQ=60)
                             TTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAA                                                                >  SRR4302533.580655/1‑94 (MQ=60)
                              TCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAAT                                                               >  SRR4302533.1450560/1‑94 (MQ=60)
                               CATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATT                                                              >  SRR4302533.724747/1‑94 (MQ=60)
                               CATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATT                                                              <  SRR4302533.2406481/94‑1 (MQ=60)
                               CATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATT                                                              >  SRR4302533.4715828/1‑94 (MQ=60)
                               CATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATT                                                              >  SRR4302533.731885/1‑94 (MQ=60)
                                ATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTA                                                             <  SRR4302533.800810/94‑1 (MQ=60)
                                   CTTTTGTAAAAAGTTTATATTAGTATCATCAATTACCCGGACCTGATACTGATAGGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATT                                                          <  SRR4302533.798049/94‑1 (MQ=60)
                                   CTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATT                                                          >  SRR4302533.4748269/1‑94 (MQ=60)
                                    TTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTA                                                         <  SRR4302533.4405026/94‑1 (MQ=60)
                                      TTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACA                                                       >  SRR4302533.3026445/1‑94 (MQ=60)
                                      TTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACA                                                       <  SRR4302533.4222960/94‑1 (MQ=60)
                                       TGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACAT                                                      >  SRR4302533.4865422/1‑94 (MQ=60)
                                       TGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACAT                                                      <  SRR4302533.3580157/94‑1 (MQ=60)
                                       TGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACAT                                                      <  SRR4302533.5130726/94‑1 (MQ=60)
                                       TGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACAT                                                      >  SRR4302533.6191094/1‑94 (MQ=60)
                                        GTAAAAAGTTTATATTAGTATCAGCAATTAACCGGCCCTGATACTGATATGATCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATT                                                     <  SRR4302533.3516346/94‑1 (MQ=60)
                                        GTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATT                                                     >  SRR4302533.5292132/1‑94 (MQ=60)
                                           AAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATC                                                  <  SRR4302533.528239/94‑1 (MQ=60)
                                            AAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCC                                                 <  SRR4302533.4178354/94‑1 (MQ=60)
                                            AAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCC                                                 >  SRR4302533.1785104/1‑94 (MQ=60)
                                             AAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCA                                                >  SRR4302533.1175896/1‑94 (MQ=60)
                                             AAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCA                                                <  SRR4302533.1480115/94‑1 (MQ=60)
                                              AGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCAC                                               <  SRR4302533.2515327/94‑1 (MQ=60)
                                              AGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCAC                                               <  SRR4302533.5452116/94‑1 (MQ=60)
                                              AGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCAC                                               <  SRR4302533.2928235/94‑1 (MQ=60)
                                               GTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACG                                              <  SRR4302533.4773311/94‑1 (MQ=60)
                                               GTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACG                                              <  SRR4302533.1418761/94‑1 (MQ=60)
                                                  TATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCA                                           >  SRR4302533.3977708/1‑94 (MQ=60)
                                                  TATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCA                                           >  SRR4302533.3706689/1‑94 (MQ=60)
                                                  TATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCA                                           <  SRR4302533.2942346/94‑1 (MQ=60)
                                                   ATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAA                                          >  SRR4302533.6142004/1‑94 (MQ=60)
                                                   ATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAA                                          >  SRR4302533.6167642/1‑94 (MQ=60)
                                                   ATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAA                                          >  SRR4302533.2158078/1‑94 (MQ=60)
                                                    TATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAA                                         >  SRR4302533.3513098/1‑94 (MQ=60)
                                                    TATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAA                                         >  SRR4302533.3456493/1‑94 (MQ=60)
                                                     ATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAG                                        >  SRR4302533.4713355/1‑94 (MQ=60)
                                                     ATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAG                                        <  SRR4302533.513263/94‑1 (MQ=60)
                                                      TTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGT                                       <  SRR4302533.2623118/94‑1 (MQ=60)
                                                      TTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGT                                       <  SRR4302533.5358647/94‑1 (MQ=60)
                                                        AGTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTAT                                     >  SRR4302533.1607959/1‑94 (MQ=60)
                                                         GTATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATT                                    <  SRR4302533.3041970/94‑1 (MQ=60)
                                                          TATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTT                                   >  SRR4302533.4062991/1‑94 (MQ=60)
                                                          TATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTT                                   <  SRR4302533.5925788/94‑1 (MQ=60)
                                                           ATCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTG                                  <  SRR4302533.6177175/94‑1 (MQ=60)
                                                            TCAGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGT                                 >  SRR4302533.4391148/1‑94 (MQ=60)
                                                              AGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCA                               <  SRR4302533.5215776/94‑1 (MQ=60)
                                                              AGCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCA                               <  SRR4302533.6267150/94‑1 (MQ=60)
                                                               GCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCAT                              <  SRR4302533.621290/94‑1 (MQ=60)
                                                               GCAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCAT                              <  SRR4302533.4409044/94‑1 (MQ=60)
                                                                CAATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATC                             <  SRR4302533.690951/94‑1 (MQ=60)
                                                                 AATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCA                            <  SRR4302533.894412/94‑1 (MQ=60)
                                                                  ATTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCAC                           >  SRR4302533.6063617/1‑94 (MQ=60)
                                                                   TTAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACA                          <  SRR4302533.4290465/94‑1 (MQ=60)
                                                                    TAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAA                         <  SRR4302533.3842753/94‑1 (MQ=60)
                                                                    TAACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAA                         <  SRR4302533.5933267/94‑1 (MQ=60)
                                                                     AACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAAT                        >  SRR4302533.5065878/1‑94 (MQ=60)
                                                                     AACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAAT                        <  SRR4302533.182453/94‑1 (MQ=60)
                                                                     AACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAAT                        >  SRR4302533.2003496/1‑94 (MQ=60)
                                                                      ACCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATG                       <  SRR4302533.4374327/94‑1 (MQ=60)
                                                                       CCGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGA                      <  SRR4302533.3935531/94‑1 (MQ=60)
                                                                        CGGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGAT                     <  SRR4302533.1396074/94‑1 (MQ=60)
                                                                         GGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATG                    <  SRR4302533.3346628/94‑1 (MQ=60)
                                                                         GGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATG                    <  SRR4302533.3180880/94‑1 (MQ=60)
                                                                         GGACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATG                    <  SRR4302533.6320336/94‑1 (MQ=60)
                                                                           ACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGT                  <  SRR4302533.4471895/94‑1 (MQ=60)
                                                                           ACCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGT                  <  SRR4302533.3877809/94‑1 (MQ=60)
                                                                            CCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTA                 >  SRR4302533.213490/1‑94 (MQ=60)
                                                                            CCTGATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTA                 <  SRR4302533.3463044/94‑1 (MQ=60)
                                                                                ATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTT             <  SRR4302533.1898970/94‑1 (MQ=60)
                                                                                ATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTT             <  SRR4302533.3929750/94‑1 (MQ=60)
                                                                                ATACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTT             <  SRR4302533.2472855/94‑1 (MQ=60)
                                                                                 TACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTC            >  SRR4302533.601485/1‑94 (MQ=60)
                                                                                 TACTGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTC            <  SRR4302533.3081037/94‑1 (MQ=60)
                                                                                    TGATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTCTCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTT         <  SRR4302533.3404119/94‑1 (MQ=60)
                                                                                     GATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTC        <  SRR4302533.5193182/94‑1 (MQ=60)
                                                                                      ATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCA       >  SRR4302533.4294717/1‑94 (MQ=60)
                                                                                      ATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCA       >  SRR4302533.5753329/1‑94 (MQ=60)
                                                                                      ATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCA       >  SRR4302533.175479/1‑94 (MQ=60)
                                                                                      ATATGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCA       <  SRR4302533.5481190/94‑1 (MQ=60)
                                                                                         TGAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGAC    <  SRR4302533.891326/94‑1 (MQ=60)
                                                                                          GAGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACA   <  SRR4302533.6144182/94‑1 (MQ=60)
                                                                                           AGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACAC  <  SRR4302533.4806518/94‑1 (MQ=60)
                                                                                           AGCCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACAC  <  SRR4302533.1069303/94‑1 (MQ=60)
                                                                                             |                                                                                           
CACTCTGGCCATTAGAGTAACCTTCTGCATTCATCCTTTTGTAAAAAGTTTATATTAGTATCAGCAATTAACCGGACCTGATACTGATATGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACAC  >  NC_000913/2066207‑2066391

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑