Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,088,609	T→C	P132P (CCT→CCC)	hisG →	ATP phosphoribosyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,088,609	0	T	C	100.0%	685.8 / NA	210	P132P (CCT→CCC)	hisG	ATP phosphoribosyltransferase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (105/105); total (105/105)

Only 100 of 214 total aligned reads displayed.

CGGCTGTCGTCTTTCGCTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCTCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCCCGCGTGCCGG  >  NC_000913/2088519‑2088698

cggcTGTCGTCTTTCGCTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCa                                                                                         <  2:4564894/93‑1 (MQ=255)

cggcTGTCGTCTTTCGCTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCa                                                                                         <  2:3153843/93‑1 (MQ=255)

  gcTGTCGTCTTTCGCTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCAcc                                                                                       <  1:1508680/93‑1 (MQ=255)

    tGTCGTCTTTCGCTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTg                                                                                     >  2:3827887/1‑93 (MQ=255)

     gtcgtcTTTCGCTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGc                                                                                    >  2:3065729/1‑93 (MQ=255)

       cgtcTTTCGCTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTc                                                                                  <  2:2044072/93‑1 (MQ=255)

       cgtcTTTCGCTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTc                                                                                  >  1:3595460/1‑93 (MQ=255)

           tttCGCTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGc                                                                              >  1:5444347/1‑93 (MQ=255)

           tttCGCTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGc                                                                              >  1:3699127/1‑93 (MQ=255)

              cGCTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGtt                                                                           <  2:366123/93‑1 (MQ=255)

                cTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTAt                                                                         <  1:6226841/93‑1 (MQ=255)

                cTGGCAACGCCGGTTGATGAAGCCTGGGACGGGCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGGTAt                                                                         >  1:4215809/1‑93 (MQ=255)

                  ggCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTAtct                                                                       >  2:5928944/1‑93 (MQ=255)

                  ggCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTAtct                                                                       <  2:3273635/93‑1 (MQ=255)

                   gCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTAtctc                                                                      <  2:67627/93‑1 (MQ=255)

                    cAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCg                                                                     >  1:739930/1‑93 (MQ=255)

                     aaCGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGa                                                                    >  2:2771815/1‑93 (MQ=255)

                     aaCGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGa                                                                    >  2:5629026/1‑93 (MQ=255)

                      aCGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGAc                                                                   <  2:496441/93‑1 (MQ=255)

                      aCGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGAc                                                                   <  1:1215185/93‑1 (MQ=255)

                       cGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGAcc                                                                  <  1:4716448/93‑1 (MQ=255)

                       cGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGAcc                                                                  <  2:730970/93‑1 (MQ=255)

                       cGCCGGTTGATGAAGCCTGGGACGGTCCGCTCGCCTTAAACGGTAAACGTATCGCCACCTCTTAGCCCCACCTGCTCAAGCGTTATCTCGAcc                                                                  <  2:534043/93‑1 (MQ=255)

                        gCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCa                                                                 >  2:2465232/1‑93 (MQ=255)

                        gCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCa                                                                 >  2:3204089/1‑93 (MQ=255)

                          cGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGa                                                               <  1:5735909/93‑1 (MQ=255)

                          cGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGa                                                               >  2:3707135/1‑93 (MQ=255)

                           ggTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGaa                                                              >  1:44273/1‑93 (MQ=255)

                           ggTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGaa                                                              <  2:4451072/93‑1 (MQ=255)

                            gTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGaaa                                                             <  2:2265397/93‑1 (MQ=255)

                            gTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGaaa                                                             <  1:5651341/93‑1 (MQ=255)

                            gTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGaaa                                                             <  2:4030281/93‑1 (MQ=255)

                            gTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGaaa                                                             <  1:1696385/93‑1 (MQ=255)

                            gTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGaaa                                                             <  1:2204282/93‑1 (MQ=255)

                            gTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGaaa                                                             <  1:3310423/93‑1 (MQ=255)

                            gTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGaaa                                                             >  2:2719398/1‑93 (MQ=255)

                            gTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGaaa                                                             <  2:5829749/93‑1 (MQ=255)

                             ttGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAg                                                            <  2:5806232/93‑1 (MQ=255)

                             ttGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAg                                                            <  1:4296423/93‑1 (MQ=255)

                              tgatgaAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAgg                                                           <  1:3035406/93‑1 (MQ=255)

                                atgaAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCa                                                         <  2:5736089/93‑1 (MQ=255)

                                 tgaAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCAt                                                        <  2:512418/93‑1 (MQ=255)

                                  gaAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCAtc                                                       <  1:4918890/93‑1 (MQ=255)

                                    aGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCAtctc                                                     >  1:2240540/1‑93 (MQ=255)

                                    aGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCAtctc                                                     <  1:3175481/93‑1 (MQ=255)

                                      ccTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCtt                                                   >  2:4839718/1‑93 (MQ=255)

                                      ccTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCtt                                                   >  2:686839/1‑93 (MQ=255)

                                        tGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCtttt                                                 <  2:1628668/93‑1 (MQ=255)

                                         gggACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTa                                                >  2:5002275/1‑93 (MQ=255)

                                         gggACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTa                                                >  1:3802361/1‑93 (MQ=255)

                                         gggACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTa                                                <  2:5154075/93‑1 (MQ=255)

                                         gggACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATATCGACCAGAAAGGCATCTCTTTTa                                                >  2:3630530/1‑93 (MQ=255)

                                            aCGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAAt                                             <  2:2124943/93‑1 (MQ=255)

                                              ggTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATcc                                           <  1:5991826/93‑1 (MQ=255)

                                               gTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCt                                          <  1:1591134/93‑1 (MQ=255)

                                               gTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCt                                          <  2:1884933/93‑1 (MQ=255)

                                               gTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCt                                          <  2:111577/93‑1 (MQ=255)

                                                tCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTg                                         <  2:5293233/93‑1 (MQ=255)

                                                tCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTg                                         <  2:2639232/93‑1 (MQ=255)

                                                   gCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCtt                                      >  2:3469204/1‑93 (MQ=255)

                                                    ctctCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTa                                     >  1:690137/1‑93 (MQ=255)

                                                    ctctCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTa                                     >  2:2090754/1‑93 (MQ=255)

                                                     tctcCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTat                                    >  2:4343862/1‑92 (MQ=255)

                                                     tctcCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTAc                                    >  2:2415338/1‑93 (MQ=255)

                                                        ccTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGa                                 >  2:1606253/1‑93 (MQ=255)

                                                        ccTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGa                                 <  2:6240847/93‑1 (MQ=255)

                                                        ccTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGa                                 >  2:3392192/1‑93 (MQ=255)

                                                         cTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTGAATCCTGCTTACTGaa                                >  1:6133264/1‑93 (MQ=255)

                                                         cTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGaa                                >  1:144043/1‑93 (MQ=255)

                                                          ttAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAAc                               >  2:5795503/1‑93 (MQ=255)

                                                          ttAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAAc                               >  2:846879/1‑93 (MQ=255)

                                                          ttAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAAc                               <  1:1210081/93‑1 (MQ=255)

                                                           tAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACg                              >  2:3259568/1‑93 (MQ=255)

                                                           tAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACg                              <  1:2028346/93‑1 (MQ=255)

                                                            aagcGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACGAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACgg                             <  1:2573190/90‑1 (MQ=255)

                                                            aaaCGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACgg                             <  1:5203997/93‑1 (MQ=255)

                                                             aaCGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGt                            >  2:2874733/1‑93 (MQ=255)

                                                             aaCGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGt                            >  1:3072982/1‑93 (MQ=255)

                                                              aCGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGtt                           >  2:4808145/1‑93 (MQ=255)

                                                               cGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTc                          <  1:5865988/93‑1 (MQ=255)

                                                               cGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTc                          <  1:2755198/93‑1 (MQ=255)

                                                                ggTAAACGTATCGCCACCTCTTATCCCCGCCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCt                         <  2:5775903/93‑1 (MQ=255)

                                                                ggTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCt                         <  2:181139/93‑1 (MQ=255)

                                                                ggTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCt                         >  1:2833110/1‑93 (MQ=255)

                                                                     aCGTATCGCCACCTCTTATCCCCACCAGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAAGCCTGCTTACTGAACGGTTCTGTTGa                    <  1:4835108/93‑1 (MQ=255)

                                                                        tATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGTACGGTTCTGTTGAAgc                 >  2:3326055/1‑92 (MQ=255)

                                                                        tATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGt                 >  1:3419493/1‑93 (MQ=255)

                                                                          tCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCg               >  2:2196537/1‑93 (MQ=255)

                                                                            gCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGcc             >  1:1160014/1‑93 (MQ=255)

                                                                            gCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGcc             >  1:3140391/1‑93 (MQ=255)

                                                                            gCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGcc             >  2:3597775/1‑93 (MQ=255)

                                                                              cACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGcccc           <  2:1163852/93‑1 (MQ=255)

                                                                               aCCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCCcg          >  1:1067002/1‑93 (MQ=255)

                                                                               aCCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCCcg          >  1:1087612/1‑93 (MQ=255)

                                                                               aCCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCCcg          >  2:1933405/1‑93 (MQ=255)

                                                                                ccTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCCcgc         >  2:5689678/1‑93 (MQ=255)

                                                                                ccTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCCcgc         <  1:1753073/93‑1 (MQ=255)

                                                                                ccTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCCcgc         <  1:85134/93‑1 (MQ=255)

                                                                                 ctctTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCCcgcg        >  1:4067427/1‑93 (MQ=255)

                                                                                       tCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCCCGCGTGCCgg  >  2:2490639/1‑93 (MQ=255)

CGGCTGTCGTCTTTCGCTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCTCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCCCGCGTGCCGG  >  NC_000913/2088519‑2088698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGGCGGCTGTCGTCTTTCGCTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCTCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCCCGCGTGCCGGACTG  >  NC_000913/2088516‑2088702

CGGCGGCTGTCGTCTTTCGCTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCC                                                                                               <  SRR4302533.2700703/94‑1 (MQ=60)

    GGCTGTCGTCTTTCGCTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACC                                                                                           >  SRR4302533.22320/1‑94 (MQ=60)

    GGCTGTCGTCTTTCGCTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACC                                                                                           >  SRR4302533.3447706/1‑94 (MQ=60)

     GCTGTCGTCTTTCGCTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCT                                                                                          <  SRR4302533.725140/94‑1 (MQ=60)

     GCTGTCGTCTTTCGCTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCT                                                                                          <  SRR4302533.1517776/94‑1 (MQ=60)

         TCGTCTTTCGCTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTC                                                                                      >  SRR4302533.3617581/1‑94 (MQ=60)

         TCGTCTTTCGCTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTC                                                                                      >  SRR4302533.2952156/1‑94 (MQ=60)

             CTTTCGCTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGC                                                                                  >  SRR4302533.3721845/1‑94 (MQ=60)

             CTTTCGCTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGC                                                                                  >  SRR4302533.5477153/1‑94 (MQ=60)

             CTTTCGCTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGC                                                                                  >  SRR4302533.3079465/1‑94 (MQ=60)

              TTTCGCTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCG                                                                                 >  SRR4302533.3750570/1‑94 (MQ=60)

              TTTCGCTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCG                                                                                 >  SRR4302533.4703661/1‑94 (MQ=60)

                  GCTGGCAACGCCGGTTGATGAAGCCTGGGACGGGCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGGTAT                                                                             >  SRR4302533.4241312/1‑94 (MQ=60)

                   CTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATC                                                                            >  SRR4302533.3273698/1‑94 (MQ=60)

                   CTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATC                                                                            <  SRR4302533.6180318/94‑1 (MQ=60)

                   CTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATC                                                                            <  SRR4302533.6264144/94‑1 (MQ=60)

                    TGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCT                                                                           <  SRR4302533.283860/94‑1 (MQ=60)

                     GGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTC                                                                          >  SRR4302533.5876551/1‑94 (MQ=60)

                      GCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCG                                                                         >  SRR4302533.744286/1‑94 (MQ=60)

                        AACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGAC                                                                       >  SRR4302533.3665777/1‑94 (MQ=60)

                         ACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACC                                                                      <  SRR4302533.1222482/94‑1 (MQ=60)

                          CGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCA                                                                     <  SRR4302533.4745042/94‑1 (MQ=60)

                            CCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGA                                                                   >  SRR4302533.4183492/1‑94 (MQ=60)

                             CGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAA                                                                  <  SRR4302533.5770531/94‑1 (MQ=60)

                             CGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAA                                                                  >  SRR4302533.44576/1‑94 (MQ=60)

                              GGTTTATGAAGCCTGGGACGGTCCTCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAA                                                                 <  SRR4302533.1217750/94‑1 (MQ=60)

                              GGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAA                                                                 >  SRR4302533.2393908/1‑94 (MQ=60)

                               GTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAG                                                                <  SRR4302533.5685499/94‑1 (MQ=60)

                               GTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAG                                                                <  SRR4302533.2217868/94‑1 (MQ=60)

                               GTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAG                                                                <  SRR4302533.1706660/94‑1 (MQ=60)

                               GTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAG                                                                <  SRR4302533.3330864/94‑1 (MQ=60)

                                TTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGG                                                               <  SRR4302533.4322262/94‑1 (MQ=60)

                                 TGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAACCGTATCGCCACCTCTTATCCCCTCCTGCTCAAGCGTTATCTCGACCAGAAAGGC                                                              <  SRR4302533.238218/94‑1 (MQ=60)

                                 TGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGC                                                              <  SRR4302533.3053982/94‑1 (MQ=60)

                                   ATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCAT                                                            <  SRR4302533.4293777/94‑1 (MQ=60)

                                     GAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCT                                                          <  SRR4302533.4948686/94‑1 (MQ=60)

                                     GAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCT                                                          <  SRR4302533.3850060/94‑1 (MQ=60)

                                     GAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCACCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCT                                                          <  SRR4302533.5891531/94‑1 (MQ=60)

                                      AAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTC                                                         >  SRR4302533.2254388/1‑94 (MQ=60)

                                      AAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTC                                                         <  SRR4302533.1202460/94‑1 (MQ=60)

                                       AGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCT                                                        <  SRR4302533.3195016/94‑1 (MQ=60)

                                           TGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTA                                                    >  SRR4302533.3825629/1‑94 (MQ=60)

                                             GGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAA                                                  >  SRR4302533.677981/1‑94 (MQ=60)

                                              GACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAAT                                                 <  SRR4302533.1603071/94‑1 (MQ=60)

                                              GACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAAT                                                 >  SRR4302533.3378348/1‑94 (MQ=60)

                                                CGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCC                                               <  SRR4302533.758755/94‑1 (MQ=60)

                                                 GGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCT                                              <  SRR4302533.1557257/94‑1 (MQ=60)

                                                 GGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCT                                              <  SRR4302533.6028120/94‑1 (MQ=60)

                                                  ggcgGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTG                                             <  SRR4302533.6140053/90‑1 (MQ=60)

                                                  GTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTG                                             <  SRR4302533.1600758/94‑1 (MQ=60)

                                                  GTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTG                                             >  SRR4302533.2822234/1‑94 (MQ=60)

                                                    CCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCT                                           >  SRR4302533.1844517/1‑94 (MQ=60)

                                                     CGCTCTCGTTAAACGGTAAACGTATCGGCACCTCTTATCCGCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTT                                          <  SRR4302533.5700532/94‑1 (MQ=60)

                                                      GCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTA                                         >  SRR4302533.694217/1‑94 (MQ=60)

                                                       CTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTAC                                        >  SRR4302533.875155/1‑94 (MQ=60)

                                                         CTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTG                                      <  SRR4302533.3186266/94‑1 (MQ=60)

                                                         CTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTG                                      >  SRR4302533.3098739/1‑94 (MQ=60)

                                                         CTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTG                                      >  SRR4302533.5334214/1‑94 (MQ=60)

                                                          TCCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGA                                     >  SRR4302533.108649/1‑94 (MQ=60)

                                                           CCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTGAATCCTGCTTACTGAA                                    >  SRR4302533.6170217/1‑94 (MQ=60)

                                                           CCTTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAA                                    >  SRR4302533.144966/1‑94 (MQ=60)

                                                             TTAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACG                                  <  SRR4302533.1217347/94‑1 (MQ=60)

                                                             TTAAACGGTAAACATATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACG                                  <  SRR4302533.3505693/94‑1 (MQ=60)

                                                              TAAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGG                                 <  SRR4302533.2040867/94‑1 (MQ=60)

                                                               AAGCGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACGAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGT                                <  SRR4302533.2589019/94‑1 (MQ=60)

                                                               AAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGT                                >  SRR4302533.3091846/1‑94 (MQ=60)

                                                               AAACGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGT                                <  SRR4302533.5235355/94‑1 (MQ=60)

                                                                  CGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCT                             >  SRR4302533.2850551/1‑94 (MQ=60)

                                                                  CGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCT                             <  SRR4302533.5901449/94‑1 (MQ=60)

                                                                  CGGTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCT                             <  SRR4302533.2772093/94‑1 (MQ=60)

                                                                    GTAAACGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGT                           >  SRR4302533.4842882/1‑94 (MQ=60)

                                                                        ACGTATCGCCACCTCTTATCCCCACCAGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAAGCCTGCTTACTGAACGGTTCTGTTGAA                       <  SRR4302533.4864414/94‑1 (MQ=60)

                                                                         CGTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAG                      <  SRR4302533.4451593/94‑1 (MQ=60)

                                                                          GTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGT                     >  SRR4302533.1109477/1‑94 (MQ=60)

                                                                          GTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGT                     >  SRR4302533.4989414/1‑94 (MQ=60)

                                                                          GTATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGT                     >  SRR4302533.3440621/1‑94 (MQ=60)

                                                                           TATCGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTC                    <  SRR4302533.4878952/94‑1 (MQ=60)

                                                                              CGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCC                 >  SRR4302533.1166975/1‑94 (MQ=60)

                                                                              CGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCC                 >  SRR4302533.3159697/1‑94 (MQ=60)

                                                                              CGCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCC                 >  SRR4302533.1484795/1‑94 (MQ=60)

                                                                               GCCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCC                >  SRR4302533.135899/1‑94 (MQ=60)

                                                                                CCACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCGCC               >  SRR4302533.1734312/1‑94 (MQ=60)

                                                                                 CACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCCCG              >  SRR4302533.1094020/1‑94 (MQ=60)

                                                                                 CACCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCCCG              >  SRR4302533.1073273/1‑94 (MQ=60)

                                                                                   CCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCCCGCG            >  SRR4302533.1646694/1‑94 (MQ=60)

                                                                                   CCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCCCGCG            <  SRR4302533.1763751/94‑1 (MQ=60)

                                                                                   CCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCCCGCG            >  SRR4302533.4092187/1‑94 (MQ=60)

                                                                                   CCTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCCCGCG            <  SRR4302533.85678/94‑1 (MQ=60)

                                                                                    CTCTTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCCCGCGT           <  SRR4302533.5670602/94‑1 (MQ=60)

                                                                                       TTATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCCCGCGTGCC        >  SRR4302533.6018639/1‑94 (MQ=60)

                                                                                        TATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCCCGCGTGCCG       <  SRR4302533.2611557/94‑1 (MQ=60)

                                                                                         ATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCCCGCGTGCCGG      >  SRR4302533.4686189/1‑94 (MQ=60)

                                                                                         ATCCCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCCCGCGTGCCGG      >  SRR4302533.2051466/1‑94 (MQ=60)

                                                                                            CCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCCCGCGTGCCGGACT   >  SRR4302533.3660326/1‑94 (MQ=60)

                                                                                            CCCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCCCGCGTGCCGGACT   <  SRR4302533.5146736/94‑1 (MQ=60)

                                                                                             CCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCCCGCGTGCCGGACTG  <  SRR4302533.1167921/94‑1 (MQ=60)

                                                                                             CCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCCCGCGTGCCGGACTG  >  SRR4302533.3900497/1‑94 (MQ=60)

CGGCGGCTGTCGTCTTTCGCTGGCAACGCCGGTTGATGAAGCCTGGGACGGTCCGCTCTCCTTAAACGGTAAACGTATCGCCACCTCTTATCCTCACCTGCTCAAGCGTTATCTCGACCAGAAAGGCATCTCTTTTAAATCCTGCTTACTGAACGGTTCTGTTGAAGTCGCCCCGCGTGCCGGACTG  >  NC_000913/2088516‑2088702

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`