Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,246,351	T→C	S68G (AGT→GGT)	lysP ←	lysine‑specific permease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,246,351	0	T	C	100.0%	835.4 / NA	261	S68G (AGT→GGT)	lysP	lysine‑specific permease
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (126/135); total (126/135)

Only 100 of 266 total aligned reads displayed.

GCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACTGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAG  >  NC_000913/2246261‑2246439

 cgcgAAGCCAAAGCCTTCTTCAACATAGTGCTGACCGTAAGTGGCAAACGCACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGt                                                                                       <  1:3374159/93‑1 (MQ=255)

  gcgAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGTAGCCAGTTCACCGAGACCGGtc                                                                                      >  2:5055932/1‑93 (MQ=255)

    gAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGtcat                                                                                    >  2:2937791/1‑93 (MQ=255)

     aaGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGtcatc                                                                                   >  2:5741453/1‑93 (MQ=255)

     aaGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGtcatc                                                                                   >  2:5295699/1‑93 (MQ=255)

     aaGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGATCACCGAGACCGGtcatc                                                                                   >  2:5586111/1‑93 (MQ=255)

      aGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGtcatca                                                                                  >  1:2905410/1‑93 (MQ=255)

          aaaGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGaa                                                                              >  1:5999107/1‑93 (MQ=255)

           aaGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAg                                                                             <  1:2254406/93‑1 (MQ=255)

            aGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGt                                                                            >  1:1735085/1‑93 (MQ=255)

            aGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGt                                                                            >  2:4305684/1‑93 (MQ=255)

             gCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTa                                                                           <  1:6246460/93‑1 (MQ=255)

             gCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTa                                                                           >  2:4251834/1‑93 (MQ=255)

              ccTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTaa                                                                          <  1:907674/93‑1 (MQ=255)

               cttcttCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTaaa                                                                         <  2:128023/93‑1 (MQ=255)

               cttcttCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTaaa                                                                         >  1:2279927/1‑93 (MQ=255)

               cttcttCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTaaa                                                                         >  1:5211407/1‑93 (MQ=255)

                ttcttcAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAAc                                                                        >  2:1230175/1‑93 (MQ=255)

                ttcttcAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAAc                                                                        >  1:100751/1‑93 (MQ=255)

                ttcttcAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAAc                                                                        <  2:4366754/93‑1 (MQ=255)

                 tcttcAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAAcc                                                                       >  2:2892394/1‑93 (MQ=255)

                 tcttcAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAAcc                                                                       >  1:72/1‑93 (MQ=255)

                 tcttcAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAAcc                                                                       >  2:5794785/1‑93 (MQ=255)

                 tcttcAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAAca                                                                       >  1:2014494/1‑92 (MQ=255)

                  cttcAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCa                                                                      <  2:1207726/93‑1 (MQ=255)

                   ttcAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCAt                                                                     <  1:2647655/93‑1 (MQ=255)

                   ttcAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCAt                                                                     <  1:4435680/93‑1 (MQ=255)

                    tcAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATc                                                                    <  1:1064342/93‑1 (MQ=255)

                     cAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCa                                                                   <  2:378889/93‑1 (MQ=255)

                     cAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCa                                                                   <  2:100476/93‑1 (MQ=255)

                      aaCATAGTACTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAg                                                                  <  2:5405330/93‑1 (MQ=255)

                       aCATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAgg                                                                 >  1:4956711/1‑93 (MQ=255)

                       aCATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAgg                                                                 >  2:1867155/1‑93 (MQ=255)

                        cATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGc                                                                <  2:636262/93‑1 (MQ=255)

                         aTAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGcc                                                               <  2:4771488/93‑1 (MQ=255)

                          tAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCa                                                              >  2:1286742/1‑93 (MQ=255)

                           aGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCaa                                                             >  1:4546720/1‑93 (MQ=255)

                             ttCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATc                                                           <  1:4231740/93‑1 (MQ=255)

                             ttCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATc                                                           >  2:2050906/1‑93 (MQ=255)

                              tCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCa                                                          >  2:2992030/1‑93 (MQ=255)

                              tCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCa                                                          <  2:3748041/93‑1 (MQ=255)

                                tGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGc                                                        >  2:4132039/1‑93 (MQ=255)

                                tGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGc                                                        <  1:3171231/93‑1 (MQ=255)

                                  aCCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCat                                                      >  1:4118589/1‑93 (MQ=255)

                                     gTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCAtata                                                   <  2:3658393/93‑1 (MQ=255)

                                     gTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCAtata                                                   >  1:2999114/1‑93 (MQ=255)

                                     gTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCAtata                                                   <  1:1434848/93‑1 (MQ=255)

                                      tAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATAc                                                  >  1:6072923/1‑93 (MQ=255)

                                      tAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATAc                                                  <  2:3292781/93‑1 (MQ=255)

                                      tAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATAc                                                  >  2:1448863/1‑93 (MQ=255)

                                      tAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATAc                                                  <  2:5478296/93‑1 (MQ=255)

                                         gTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACgag                                               <  2:5914233/93‑1 (MQ=255)

                                          tGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACgaga                                              <  1:3298729/93‑1 (MQ=255)

                                           ggCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGagag                                             <  1:1268021/93‑1 (MQ=255)

                                           ggCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGagag                                             <  1:1666106/93‑1 (MQ=255)

                                           ggCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGagag                                             <  1:2562992/93‑1 (MQ=255)

                                            gCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGc                                            <  1:5674292/93‑1 (MQ=255)

                                             cAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCa                                           <  1:2135399/93‑1 (MQ=255)

                                             cAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCa                                           <  2:608170/93‑1 (MQ=255)

                                              aaaCGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCaa                                          >  1:513328/1‑93 (MQ=255)

                                              aaaCGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCaa                                          <  2:5991743/93‑1 (MQ=255)

                                              aaaCGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCaa                                          >  2:810349/1‑93 (MQ=255)

                                              aaaCGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGGAAACCATCAGGCCAATCAGCATATACGAGAGCaa                                          >  1:5070676/1‑93 (MQ=255)

                                                aCGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATg                                        >  2:2716928/1‑93 (MQ=255)

                                                 cGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGc                                       <  1:134367/93‑1 (MQ=255)

                                                  gAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGcc                                      >  2:4644507/1‑93 (MQ=255)

                                                   aaCCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGccc                                     >  2:981644/1‑93 (MQ=255)

                                                   aaCCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGccc                                     <  1:652975/93‑1 (MQ=255)

                                                   aaCCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGccc                                     <  2:1170426/93‑1 (MQ=255)

                                                   aaCCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGccc                                     <  2:3681086/93‑1 (MQ=255)

                                                    acgggAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGcccc                                    <  1:4893996/90‑1 (MQ=255)

                                                    aCCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGcccc                                    <  1:3908551/93‑1 (MQ=255)

                                                    aCCAGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATGCGAGAGCAATGcccc                                    >  1:3092920/1‑93 (MQ=255)

                                                     ccGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGccccc                                   >  2:4549882/1‑92 (MQ=255)

                                                     ccGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCcccg                                   >  2:1492872/1‑93 (MQ=255)

                                                       ggAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCcccgcc                                 <  1:361330/93‑1 (MQ=255)

                                                         aaaCCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCcccgcccg                               >  1:2986126/1‑93 (MQ=255)

                                                           aCCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGa                             >  2:4651828/1‑93 (MQ=255)

                                                            ccGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGAc                            >  1:248594/1‑93 (MQ=255)

                                                                 atatatGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGAcctgcc                       >  1:3217877/1‑93 (MQ=255)

                                                                 atatatGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGAcctgcc                       >  1:2976085/1‑93 (MQ=255)

                                                                  tatatGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGAcctgcct                      <  2:925984/93‑1 (MQ=255)

                                                                   atatGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGAcctgccta                     <  2:3394571/93‑2 (MQ=255)

                                                                      tGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTgaga                  >  1:4703847/1‑93 (MQ=255)

                                                                       gCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGaa                 >  2:5160278/1‑93 (MQ=255)

                                                                        cAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGaaa                <  2:2154968/93‑1 (MQ=255)

                                                                        cAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGaaa                >  1:5274440/1‑93 (MQ=255)

                                                                         aGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAAt               <  1:5029279/93‑1 (MQ=255)

                                                                         aGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAAt               <  1:184514/93‑1 (MQ=255)

                                                                          gCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATc              <  2:2411842/93‑1 (MQ=255)

                                                                            cAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGt            >  2:3467735/1‑93 (MQ=255)

                                                                              gTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTg          <  2:1793986/93‑1 (MQ=255)

                                                                                tCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTgcg        >  1:4499288/1‑93 (MQ=255)

                                                                                 cACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTgcgc       >  1:5505375/1‑93 (MQ=255)

                                                                                  aCCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGcc      >  2:1635500/1‑93 (MQ=255)

                                                                                   ccGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCa     <  2:4136786/93‑1 (MQ=255)

                                                                                    cGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCag    <  1:1940407/93‑1 (MQ=255)

                                                                                    cGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCag    >  2:1590191/1‑93 (MQ=255)

                                                                                     gagaCCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCaga   <  2:2757031/93‑1 (MQ=255)

                                                                                      agaCCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCagag  >  2:2305698/1‑93 (MQ=255)

GCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACTGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAG  >  NC_000913/2246261‑2246439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCAGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACTGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAAC  >  NC_000913/2246258‑2246444

CCAGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACC                                                                                               <  SRR4302533.4656347/94‑1 (MQ=60)

CCAGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACC                                                                                               <  SRR4302533.1507415/94‑1 (MQ=60)

CCAGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACC                                                                                               <  SRR4302533.6126202/94‑1 (MQ=60)

 CAGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCG                                                                                              <  SRR4302533.5774109/94‑1 (MQ=60)

 CAGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAATGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCG                                                                                              >  SRR4302533.2451275/1‑94 (MQ=60)

  AGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGG                                                                                             >  SRR4302533.5415893/1‑94 (MQ=60)

  AGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGG                                                                                             <  SRR4302533.4903537/94‑1 (MQ=60)

    CGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTC                                                                                           >  SRR4302533.1059072/1‑94 (MQ=60)

    CGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTC                                                                                           <  SRR4302533.2597317/94‑1 (MQ=60)

    CGCGAAGCCAAAGCCTTCTTCAACATAGTGCTGACCGTAAGTGGCAAACGCACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTC                                                                                           <  SRR4302533.3394995/94‑1 (MQ=60)

     GCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCA                                                                                          <  SRR4302533.919289/94‑1 (MQ=60)

      CGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCAT                                                                                         <  SRR4302533.5107604/94‑1 (MQ=60)

      CGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCAT                                                                                         <  SRR4302533.4730517/94‑1 (MQ=60)

      CGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCAT                                                                                         >  SRR4302533.5325106/1‑94 (MQ=60)

      CGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCAT                                                                                         >  SRR4302533.2273259/1‑94 (MQ=60)

       GAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATC                                                                                        >  SRR4302533.3513075/1‑94 (MQ=60)

        AAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCA                                                                                       >  SRR4302533.2923253/1‑94 (MQ=60)

        AAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCA                                                                                       <  SRR4302533.2529422/94‑1 (MQ=60)

        AAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCA                                                                                       <  SRR4302533.3314642/94‑1 (MQ=60)

        AAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCA                                                                                       <  SRR4302533.4177596/94‑1 (MQ=60)

         aaccgAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAG                                                                                      <  SRR4302533.609131/89‑1 (MQ=60)

         AGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAG                                                                                      <  SRR4302533.609130/94‑1 (MQ=60)

         AGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAG                                                                                      <  SRR4302533.3292770/94‑1 (MQ=60)

            CAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAA                                                                                   >  SRR4302533.4535774/1‑94 (MQ=60)

            CAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAA                                                                                   <  SRR4302533.5040923/94‑1 (MQ=60)

            CAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAA                                                                                   >  SRR4302533.232581/1‑94 (MQ=60)

            CAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAA                                                                                   >  SRR4302533.6035444/1‑94 (MQ=60)

             AAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAG                                                                                  <  SRR4302533.5559438/94‑1 (MQ=60)

              AAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGT                                                                                 <  SRR4302533.2268346/94‑1 (MQ=60)

              AAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGT                                                                                 >  SRR4302533.1745611/1‑94 (MQ=60)

               AGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTA                                                                                <  SRR4302533.1354553/94‑1 (MQ=60)

                GCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAA                                                                               <  SRR4302533.6283844/94‑1 (MQ=60)

                 CCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAA                                                                              >  SRR4302533.2294045/1‑94 (MQ=60)

                 CCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAA                                                                              >  SRR4302533.5242793/1‑94 (MQ=60)

                 CCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAA                                                                              >  SRR4302533.4149568/1‑94 (MQ=60)

                 CCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAA                                                                              <  SRR4302533.912997/94‑1 (MQ=60)

                 CCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAA                                                                              >  SRR4302533.4507054/1‑94 (MQ=60)

                  CTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAAC                                                                             >  SRR4302533.101378/1‑94 (MQ=60)

                  CTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAAC                                                                             >  SRR4302533.5086363/1‑94 (MQ=60)

                   TTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACC                                                                            <  SRR4302533.2948361/94‑1 (MQ=60)

                   TTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACC                                                                            >  SRR4302533.73/1‑94 (MQ=60)

                   TTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACA                                                                            >  SRR4302533.2026903/1‑94 (MQ=60)

                      TTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATC                                                                         <  SRR4302533.4462495/94‑1 (MQ=60)

                      TTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATC                                                                         <  SRR4302533.2663922/94‑1 (MQ=60)

                       TCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCA                                                                        <  SRR4302533.5988045/94‑1 (MQ=60)

                       TCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCA                                                                        <  SRR4302533.1070595/94‑1 (MQ=60)

                        CAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAG                                                                       <  SRR4302533.1154258/94‑1 (MQ=60)

                        CAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAG                                                                       <  SRR4302533.3202830/94‑1 (MQ=60)

                        CAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAG                                                                       >  SRR4302533.2994664/1‑94 (MQ=60)

                        CAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAG                                                                       >  SRR4302533.4756201/1‑94 (MQ=60)

                        CAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAG                                                                       <  SRR4302533.172798/94‑1 (MQ=60)

                         AACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGG                                                                      >  SRR4302533.4986736/1‑94 (MQ=60)

                            ATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCA                                                                   >  SRR4302533.67493/1‑94 (MQ=60)

                             TAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAA                                                                  >  SRR4302533.4574255/1‑94 (MQ=60)

                              AGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAAT                                                                 >  SRR4302533.1850534/1‑94 (MQ=60)

                               GTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATC                                                                >  SRR4302533.2141924/1‑94 (MQ=60)

                                TTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCA                                                               <  SRR4302533.4257316/94‑1 (MQ=60)

                                 TCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAG                                                              <  SRR4302533.6050905/94‑1 (MQ=60)

                                   TGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCA                                                            <  SRR4302533.3190750/94‑1 (MQ=60)

                                    GACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCAT                                                           >  SRR4302533.5277658/1‑94 (MQ=60)

                                    GACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCAT                                                           <  SRR4302533.504551/94‑1 (MQ=60)

                                    GACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCAT                                                           <  SRR4302533.5194198/94‑1 (MQ=60)

                                    GACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCAT                                                           >  SRR4302533.4143604/1‑94 (MQ=60)

                                    GACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCAT                                                           >  SRR4302533.2796228/1‑94 (MQ=60)

                                     ACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATA                                                          <  SRR4302533.1853513/94‑1 (MQ=60)

                                      CCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATAT                                                         >  SRR4302533.3338937/1‑94 (MQ=60)

                                       CGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATA                                                        >  SRR4302533.4073244/1‑94 (MQ=60)

                                       CGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATA                                                        <  SRR4302533.2137122/94‑1 (MQ=60)

                                       CGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATA                                                        >  SRR4302533.3017456/1‑94 (MQ=60)

                                       CGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATA                                                        >  SRR4302533.1593588/1‑94 (MQ=60)

                                        GTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATAC                                                       <  SRR4302533.4527671/94‑1 (MQ=60)

                                        GTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATAC                                                       <  SRR4302533.1443510/94‑1 (MQ=60)

                                        GTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATAC                                                       <  SRR4302533.6193984/94‑1 (MQ=60)

                                        GTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATAC                                                       >  SRR4302533.6109663/1‑94 (MQ=60)

                                         TAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACG                                                      >  SRR4302533.4969100/1‑94 (MQ=60)

                                           AGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAG                                                    >  SRR4302533.1946003/1‑94 (MQ=60)

                                           AGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAG                                                    >  SRR4302533.3035338/1‑94 (MQ=60)

                                            GTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGA                                                   >  SRR4302533.4624128/1‑94 (MQ=60)

                                             TGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAG                                                  <  SRR4302533.3319084/94‑1 (MQ=60)

                                             TGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAG                                                  <  SRR4302533.5128030/94‑1 (MQ=60)

                                              GGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGC                                                 <  SRR4302533.1923408/94‑1 (MQ=60)

                                              GGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGC                                                 <  SRR4302533.1676174/94‑1 (MQ=60)

                                              GGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGC                                                 <  SRR4302533.1275612/94‑1 (MQ=60)

                                              GGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGC                                                 <  SRR4302533.2578770/94‑1 (MQ=60)

                                               GCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCA                                                <  SRR4302533.769410/94‑1 (MQ=60)

                                               GCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCA                                                <  SRR4302533.5708560/94‑1 (MQ=60)

                                               GCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGCAAACCATCAGGCCAATCAGCATATACGAGAGAA                                                >  SRR4302533.4329832/1‑94 (MQ=60)

                                                CAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAA                                               <  SRR4302533.2148565/94‑1 (MQ=60)

                                                CAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAA                                               >  SRR4302533.516379/1‑94 (MQ=60)

                                                CAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGGAAACCATCAGGCCAATCAGCATATACGAGAGCAA                                               >  SRR4302533.5101329/1‑94 (MQ=60)

                                                 AAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAAT                                              >  SRR4302533.699451/1‑94 (MQ=60)

                                                 AAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAAT                                              <  SRR4302533.2248007/94‑1 (MQ=60)

                                                    CGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCC                                           <  SRR4302533.135218/94‑1 (MQ=60)

                                                    CGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGAATATACGAGAGCAATGCC                                           >  SRR4302533.4976548/1‑94 (MQ=60)

                                                      AACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCC                                         <  SRR4302533.656830/94‑1 (MQ=60)

                                                      AACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCC                                         <  SRR4302533.906459/94‑1 (MQ=60)

                                                      AACCAGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATGCGAGAGCAATGCCCC                                         >  SRR4302533.3111935/1‑94 (MQ=60)

                                                       ACGGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCG                                        <  SRR4302533.4923657/94‑1 (MQ=60)

                                                       ACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCG                                        <  SRR4302533.5168486/94‑1 (MQ=60)

                                                       ACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCG                                        <  SRR4302533.3932423/94‑1 (MQ=60)

                                                        CCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGC                                       <  SRR4302533.1962879/94‑1 (MQ=60)

                                                          GGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCC                                     >  SRR4302533.6218992/1‑94 (MQ=60)

                                                          GGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCC                                     <  SRR4302533.363526/94‑1 (MQ=60)

                                                          GGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCC                                     <  SRR4302533.3011750/94‑1 (MQ=60)

                                                          GGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCC                                     <  SRR4302533.1383948/94‑1 (MQ=60)

                                                          GGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCC                                     <  SRR4302533.223246/94‑1 (MQ=60)

                                                           GAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCG                                    <  SRR4302533.253554/94‑1 (MQ=60)

                                                           GAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCG                                    >  SRR4302533.3004395/1‑94 (MQ=60)

                                                            AAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGG                                   <  SRR4302533.3223542/94‑1 (MQ=60)

                                                              ACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGAC                                 >  SRR4302533.250129/1‑94 (MQ=60)

                                                               CCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACC                                <  SRR4302533.4304411/94‑1 (MQ=60)

                                                                CGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCT                               >  SRR4302533.5574139/1‑94 (MQ=60)

                                                                 GGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTG                              <  SRR4302533.1288253/94‑1 (MQ=60)

                                                                   CATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCC                            >  SRR4302533.3237719/1‑94 (MQ=60)

                                                                   CATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCC                            >  SRR4302533.2994293/1‑94 (MQ=60)

                                                                    ATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCT                           >  SRR4302533.2372184/1‑94 (MQ=60)

                                                                     TATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTG                          >  SRR4302533.3667164/1‑94 (MQ=60)

                                                                     TATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTG                          <  SRR4302533.4331591/94‑1 (MQ=60)

                                                                        ATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGA                       >  SRR4302533.4732361/1‑94 (MQ=60)

                                                                          GCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAA                     >  SRR4302533.5306065/1‑94 (MQ=60)

                                                                            AGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATC                   <  SRR4302533.185662/94‑1 (MQ=60)

                                                                            AGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATC                   <  SRR4302533.5059729/94‑1 (MQ=60)

                                                                              CCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGT                 <  SRR4302533.3179456/94‑1 (MQ=60)

                                                                               CAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTT                >  SRR4302533.3083595/1‑94 (MQ=60)

                                                                                AGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTG               >  SRR4302533.3004933/1‑94 (MQ=60)

                                                                                AGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTG               <  SRR4302533.3719836/94‑1 (MQ=60)

                                                                                 GTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGC              <  SRR4302533.641993/94‑1 (MQ=60)

                                                                                  TTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATCCGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCG             <  SRR4302533.2965083/94‑1 (MQ=60)

                                                                                  TTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCG             >  SRR4302533.4526534/1‑94 (MQ=60)

                                                                                   TCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGC            >  SRR4302533.5538595/1‑94 (MQ=60)

                                                                                     ACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCA          >  SRR4302533.1275421/1‑94 (MQ=60)

                                                                                      CCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAG         <  SRR4302533.287831/94‑1 (MQ=60)

                                                                                       CGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGA        <  SRR4302533.3510537/94‑1 (MQ=60)

                                                                                       CGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGA        <  SRR4302533.1952242/94‑1 (MQ=60)

                                                                                         AGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGG      <  SRR4302533.1654168/94‑1 (MQ=60)

                                                                                          GACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGC     <  SRR4302533.962424/94‑1 (MQ=60)

                                                                                             CGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAAC  >  SRR4302533.5544296/1‑94 (MQ=60)

CCAGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACTGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAAC  >  NC_000913/2246258‑2246444

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`