Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,306,256 T→C E127G (GAA→GGA)  yojI ← putative ATP‑binding component of a transport system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,306,2560TC100.0% 647.8 / NA 199E127G (GAA→GGA) yojIputative ATP‑binding component of a transport system
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (105/94);  total (105/94)

Only 100 of 210 total aligned reads displayed.

ATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTTCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCGC  >  NC_000913/2306166‑2306345
                                                                                          |                                                                                         
aTCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTccc                                                                                         >  2:3979139/1‑93 (MQ=255)
aTCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTccc                                                                                         <  1:660679/93‑1 (MQ=255)
 tCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCg                                                                                        <  2:5444399/93‑1 (MQ=255)
 tCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCg                                                                                        >  1:5505330/1‑93 (MQ=255)
    aGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCa                                                                                     >  2:6071067/1‑93 (MQ=255)
     gATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAg                                                                                    >  1:2075475/1‑93 (MQ=255)
      aTAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGa                                                                                   <  1:2441051/93‑1 (MQ=255)
      aTAGCCGTTACCAGCAACATTTTGCCAGACAGCGTCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGa                                                                                   <  1:2610050/93‑1 (MQ=255)
       tAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGAc                                                                                  <  1:5335438/93‑1 (MQ=255)
       tAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGAc                                                                                  >  1:2692490/1‑93 (MQ=255)
         gCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGc                                                                                >  1:2389967/1‑93 (MQ=255)
           cGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGcac                                                                              >  2:2069605/1‑93 (MQ=255)
            gTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGcaca                                                                             >  2:4532113/1‑93 (MQ=255)
             ttACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACaa                                                                            <  1:826913/93‑1 (MQ=255)
             ttACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACaa                                                                            >  2:3791055/1‑93 (MQ=255)
             ttACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACaa                                                                            >  2:1358147/1‑93 (MQ=255)
               aCCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACaaaa                                                                          >  1:5029583/1‑93 (MQ=255)
               aCCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACaaaa                                                                          <  2:165955/93‑1 (MQ=255)
                ccAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAg                                                                         <  1:3300352/93‑1 (MQ=255)
                ccAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAg                                                                         <  2:2367278/93‑1 (MQ=255)
                 cAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGc                                                                        <  2:4744709/93‑1 (MQ=255)
                    cAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAAt                                                                     <  1:1800049/93‑1 (MQ=255)
                    cAACATTTAGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAAt                                                                     >  2:6118335/1‑93 (MQ=255)
                      aCATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATgg                                                                   <  2:1903390/93‑1 (MQ=255)
                       cATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGt                                                                  <  1:1529764/93‑1 (MQ=255)
                       cATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGt                                                                  >  1:3438782/1‑93 (MQ=255)
                       cATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGt                                                                  >  2:3161252/1‑93 (MQ=255)
                             gCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATAtt                                                            >  1:5466713/1‑93 (MQ=255)
                             gCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATAtt                                                            <  1:3817128/93‑1 (MQ=255)
                             gCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAAAGATCCCCTGCACCAGTCCCGGCAGACGCACACAAGCAATGGTGATAtt                                                            >  2:2903503/1‑93 (MQ=255)
                              cccGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTg                                                           >  1:1427768/1‑93 (MQ=255)
                               ccGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTgc                                                          >  1:6120360/1‑93 (MQ=255)
                                 gACAGCATCCTCAGATACGCCGCAGAACCGATAGTGAGAATGACCCCCTGCATCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTgcgc                                                        <  2:3890916/93‑1 (MQ=255)
                                 gACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCACGGCAGACGCACAAAAGCAATGGAGATATTgcgc                                                        >  2:1042110/1‑93 (MQ=255)
                                  aCAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGca                                                       <  2:1248431/93‑1 (MQ=255)
                                      cATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATc                                                   <  2:2668652/93‑1 (MQ=255)
                                      cATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATc                                                   <  1:100166/93‑1 (MQ=255)
                                      cATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATc                                                   <  1:633769/93‑1 (MQ=255)
                                      cATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATc                                                   <  1:6214046/93‑1 (MQ=255)
                                        tCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGc                                                 >  1:4932813/1‑93 (MQ=255)
                                         ccACAGATACGCCGCTGAACCGATAGTGAGAATGCTCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCt                                                <  1:144094/93‑1 (MQ=255)
                                         ccACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCt                                                >  2:5301147/1‑93 (MQ=255)
                                          cacaGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATAGCGCACATCGCTg                                               >  1:3599817/1‑93 (MQ=255)
                                           acaGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTgg                                              >  2:4714119/1‑93 (MQ=255)
                                            caGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGt                                             <  2:4902806/93‑1 (MQ=255)
                                            caGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGt                                             <  2:5511489/93‑1 (MQ=255)
                                             aGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGtt                                            <  2:3122259/93‑1 (MQ=255)
                                                tACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAAc                                         <  1:1758023/93‑1 (MQ=255)
                                                tACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAAc                                         <  2:6035556/93‑1 (MQ=255)
                                                 aCGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAAcc                                        <  2:725177/93‑1 (MQ=255)
                                                  cgccgcTGAACCGATAGTGAGAATGACCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAAccc                                       <  1:1284360/93‑1 (MQ=255)
                                                      gcTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACTCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGcc                                   >  1:5802991/1‑93 (MQ=255)
                                                      gcTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGcc                                   >  2:2139824/1‑93 (MQ=255)
                                                       cTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCa                                  >  2:3229106/1‑93 (MQ=255)
                                                        tGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAg                                 >  1:4084871/1‑93 (MQ=255)
                                                         gAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGc                                <  1:4541206/93‑1 (MQ=255)
                                                         gAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGc                                >  1:2828622/1‑93 (MQ=255)
                                                           aCCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCaa                              >  1:3095613/1‑93 (MQ=255)
                                                           aCCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCaa                              <  2:1935504/93‑1 (MQ=255)
                                                           aCCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCaa                              <  1:807843/93‑1 (MQ=255)
                                                           aCCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCaa                              >  2:4656553/1‑93 (MQ=255)
                                                            ccGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAAc                             <  2:625107/93‑1 (MQ=255)
                                                             cGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACg                            >  1:1658059/1‑93 (MQ=255)
                                                             cGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACg                            >  2:4387898/1‑93 (MQ=255)
                                                              gATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGa                           <  1:3127027/93‑1 (MQ=255)
                                                               aTAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAg                          <  2:972458/93‑1 (MQ=255)
                                                               aTAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAg                          >  2:1606849/1‑93 (MQ=255)
                                                               aTAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACACCGCCAGCAACGAg                          >  1:469188/1‑93 (MQ=255)
                                                                tAGTGATAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTACCCCCGCCAGCAACGAgg                         <  2:4083257/93‑1 (MQ=255)
                                                                tAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAgg                         >  1:3713817/1‑93 (MQ=255)
                                                                tAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAgg                         >  2:42149/1‑93 (MQ=255)
                                                                   tGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGgcgc                      <  2:5774447/93‑1 (MQ=255)
                                                                     agaATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTa                    <  1:321777/93‑1 (MQ=255)
                                                                     agaATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTa                    <  1:5360615/93‑1 (MQ=255)
                                                                      gaATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTAc                   <  2:3020738/93‑1 (MQ=255)
                                                                      gaATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTAc                   <  1:2109729/93‑1 (MQ=255)
                                                                      gaATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTAc                   >  2:5888020/1‑93 (MQ=255)
                                                                       aaTGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTAcc                  <  2:817120/93‑1 (MQ=255)
                                                                       aaTGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTAcc                  <  2:3673299/93‑1 (MQ=255)
                                                                        aTGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCg                 >  2:4853043/1‑93 (MQ=255)
                                                                          taTCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAg               <  1:111895/92‑1 (MQ=255)
                                                                          gATCCCCTGCACCAGTCCCGGCAGATGCACAAAAGTACGGGTGATATTGCGCACATCGCTGTTTACCCCCGCCAGCAACGAGGCGCTACCGAg               <  2:3496904/93‑1 (MQ=255)
                                                                            tCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAgtt             >  2:2502219/1‑93 (MQ=255)
                                                                             ccccTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAgttg            >  1:1212772/1‑93 (MQ=255)
                                                                              cccTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTACCCCCGCCAGCAACGAGGCGCTACCGAgttgt           <  2:3848915/93‑1 (MQ=255)
                                                                               ccTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAgttgtt          <  2:942465/93‑1 (MQ=255)
                                                                                cTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCCCATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTc         <  2:5100130/93‑1 (MQ=255)
                                                                                cTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTc         <  1:4179765/93‑1 (MQ=255)
                                                                                cTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTc         >  2:704328/1‑93 (MQ=255)
                                                                                 tGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCa        >  1:600329/1‑93 (MQ=255)
                                                                                  gCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTACCCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCaa       <  1:780364/93‑1 (MQ=255)
                                                                                   cACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAAt      <  1:225768/93‑1 (MQ=255)
                                                                                    aCCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATg     <  1:3513480/93‑1 (MQ=255)
                                                                                    aCCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATg     <  2:2643983/93‑1 (MQ=255)
                                                                                     ccAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATgc    >  2:3831196/1‑93 (MQ=255)
                                                                                     ccAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATgc    >  2:2750991/1‑93 (MQ=255)
                                                                                     ccAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATgc    >  1:2116499/1‑93 (MQ=255)
                                                                                     ccAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATgc    >  1:5576834/1‑93 (MQ=255)
                                                                                      cAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATgcg   >  1:4655295/1‑93 (MQ=255)
                                                                                       aGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATgcgc  <  1:3697199/93‑1 (MQ=255)
                                                                                          |                                                                                         
ATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTTCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCGC  >  NC_000913/2306166‑2306345

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCCATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTTCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCGCTCGA  >  NC_000913/2306163‑2306349
                                                                                             |                                                                                             
GCCATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTC                                                                                               >  SRR4302533.4875506/1‑94 (MQ=60)
 CCATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCC                                                                                              >  SRR4302533.4865663/1‑94 (MQ=60)
  CATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCC                                                                                             >  SRR4302533.418371/1‑94 (MQ=60)
  CATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCC                                                                                             >  SRR4302533.6201273/1‑94 (MQ=60)
  CATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCC                                                                                             >  SRR4302533.263264/1‑94 (MQ=60)
   ATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCG                                                                                            <  SRR4302533.664571/94‑1 (MQ=60)
   ATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCG                                                                                            >  SRR4302533.149978/1‑94 (MQ=60)
   ATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCG                                                                                            >  SRR4302533.5538549/1‑94 (MQ=60)
    TCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGG                                                                                           <  SRR4302533.3246903/94‑1 (MQ=60)
    TCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGG                                                                                           <  SRR4302533.5383746/94‑1 (MQ=60)
     CCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGC                                                                                          >  SRR4302533.590056/1‑94 (MQ=60)
      CAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCA                                                                                         >  SRR4302533.3342734/1‑94 (MQ=60)
       AGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAG                                                                                        >  SRR4302533.2088252/1‑94 (MQ=60)
         ATAGCCGTTACTAGCAACATGTTGCCCTACAGCAGCCGCAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGAC                                                                                      <  SRR4302533.5434226/94‑1 (MQ=60)
         ATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGAC                                                                                      <  SRR4302533.2456121/94‑1 (MQ=60)
         ATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGAC                                                                                      >  SRR4302533.2708991/1‑94 (MQ=60)
         ATAGCCGTTACCAGCAACATTTTGCCAGACAGCGTCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGAC                                                                                      <  SRR4302533.2626073/94‑1 (MQ=60)
          TAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACG                                                                                     <  SRR4302533.5367419/94‑1 (MQ=60)
          TAGCCGTAACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACG                                                                                     <  SRR4302533.5608890/94‑1 (MQ=60)
           AGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGC                                                                                    >  SRR4302533.2404727/1‑94 (MQ=60)
           AGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGC                                                                                    >  SRR4302533.2172221/1‑94 (MQ=60)
              CGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACA                                                                                 >  SRR4302533.1804887/1‑94 (MQ=60)
              CGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACA                                                                                 >  SRR4302533.2114536/1‑94 (MQ=60)
                TTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAA                                                                               <  SRR4302533.831765/94‑1 (MQ=60)
                 TACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAA                                                                              <  SRR4302533.3646265/94‑1 (MQ=60)
                 TACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAA                                                                              >  SRR4302533.5060036/1‑94 (MQ=60)
                   CCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGC                                                                            <  SRR4302533.2128244/94‑1 (MQ=60)
                   CCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGC                                                                            >  SRR4302533.4623113/1‑94 (MQ=60)
                   CCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGC                                                                            <  SRR4302533.3320728/94‑1 (MQ=60)
                    CAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCA                                                                           <  SRR4302533.2393676/94‑1 (MQ=60)
                     AGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAA                                                                          >  SRR4302533.1280134/1‑94 (MQ=60)
                       CAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATG                                                                        <  SRR4302533.1811001/94‑1 (MQ=60)
                       CAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATG                                                                        <  SRR4302533.2757560/94‑1 (MQ=60)
                       CAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCACGGCAGACGCACAAGAGCAATG                                                                        >  SRR4302533.3595210/1‑94 (MQ=60)
                         ACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGT                                                                      >  SRR4302533.3460018/1‑94 (MQ=60)
                         ACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGT                                                                      <  SRR4302533.1331120/94‑1 (MQ=60)
                          CATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTG                                                                     <  SRR4302533.1538962/94‑1 (MQ=60)
                           ATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGA                                                                    >  SRR4302533.1911413/1‑94 (MQ=60)
                             TTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATA                                                                  <  SRR4302533.3867768/94‑1 (MQ=60)
                              TTGCCCGAGAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATAT                                                                 <  SRR4302533.1097000/94‑1 (MQ=60)
                               TGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATT                                                                >  SRR4302533.5499664/1‑94 (MQ=60)
                                GCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTG                                                               >  SRR4302533.1436397/1‑94 (MQ=60)
                                GCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTG                                                               <  SRR4302533.3840466/94‑1 (MQ=60)
                                GCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTG                                                               <  SRR4302533.6078651/94‑1 (MQ=60)
                                 CCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGC                                                              >  SRR4302533.6157267/1‑94 (MQ=60)
                                  CCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCG                                                             >  SRR4302533.82369/1‑94 (MQ=60)
                                       AGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACAT                                                        <  SRR4302533.1152769/94‑1 (MQ=60)
                                         CATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCG                                                      <  SRR4302533.6251305/94‑1 (MQ=60)
                                         CATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCG                                                      <  SRR4302533.637497/94‑1 (MQ=60)
                                         CATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCG                                                      <  SRR4302533.100789/94‑1 (MQ=60)
                                         CATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCG                                                      >  SRR4302533.3726257/1‑94 (MQ=60)
                                          ATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGC                                                     <  SRR4302533.4142073/94‑1 (MQ=60)
                                          ATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGC                                                     >  SRR4302533.4962683/1‑94 (MQ=60)
                                          ATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGC                                                     >  SRR4302533.3528754/1‑94 (MQ=60)
                                            CCACAGATACGCCGCTGAACCGATAGTGAGAATGCTCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTG                                                   <  SRR4302533.145017/94‑1 (MQ=60)
                                            CCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTG                                                   <  SRR4302533.452773/94‑1 (MQ=60)
                                            CCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTG                                                   >  SRR4302533.3737485/1‑94 (MQ=60)
                                            CCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATAGCGCACATCGCTG                                                   >  SRR4302533.3621964/1‑94 (MQ=60)
                                               CAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTT                                                >  SRR4302533.97933/1‑94 (MQ=60)
                                                  ATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAAC                                             >  SRR4302533.4964017/1‑94 (MQ=60)
                                                  ATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAAC                                             <  SRR4302533.3145767/94‑1 (MQ=60)
                                                   TACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACC                                            <  SRR4302533.1768739/94‑1 (MQ=60)
                                                     CGCCGCTGAACCGATAGTGAGAATGACCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCC                                          <  SRR4302533.1292086/94‑1 (MQ=60)
                                                      GCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCG                                         <  SRR4302533.2595388/94‑1 (MQ=60)
                                                        CGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACTCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCC                                       >  SRR4302533.5838042/1‑94 (MQ=60)
                                                        CGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCC                                       >  SRR4302533.6260057/1‑94 (MQ=60)
                                                        CGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCC                                       >  SRR4302533.5784169/1‑94 (MQ=60)
                                                          CTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAG                                     >  SRR4302533.4109738/1‑94 (MQ=60)
                                                          CTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAG                                     >  SRR4302533.4746944/1‑94 (MQ=60)
                                                           TGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGC                                    >  SRR4302533.661828/1‑94 (MQ=60)
                                                           TGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGC                                    >  SRR4302533.2846025/1‑94 (MQ=60)
                                                            GAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCA                                   <  SRR4302533.4568702/94‑1 (MQ=60)
                                                             AACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAA                                  >  SRR4302533.3114643/1‑94 (MQ=60)
                                                             AACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAA                                  >  SRR4302533.3206699/1‑94 (MQ=60)
                                                              ACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAAC                                 <  SRR4302533.812592/94‑1 (MQ=60)
                                                               CCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACG                                >  SRR4302533.1668091/1‑94 (MQ=60)
                                                               CCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACG                                <  SRR4302533.679412/94‑1 (MQ=60)
                                                                 GATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAG                              <  SRR4302533.3146251/94‑1 (MQ=60)
                                                                 GATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACACCGCCAGCAACGAG                              >  SRR4302533.471991/1‑94 (MQ=60)
                                                                  ATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGG                             >  SRR4302533.4704725/1‑94 (MQ=60)
                                                                  ATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGG                             >  SRR4302533.3736619/1‑94 (MQ=60)
                                                                      TGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCT                         >  SRR4302533.1441078/1‑94 (MQ=60)
                                                                        AGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTAC                       <  SRR4302533.323743/94‑1 (MQ=60)
                                                                        AGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTAC                       <  SRR4302533.5392810/94‑1 (MQ=60)
                                                                         GAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACC                      <  SRR4302533.2122744/94‑1 (MQ=60)
                                                                            TGATCCCCTGCCCCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAG                   <  SRR4302533.2412251/94‑1 (MQ=60)
                                                                            TGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAG                   <  SRR4302533.98628/94‑1 (MQ=60)
                                                                             TATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGT                  <  SRR4302533.112601/94‑1 (MQ=60)
                                                                               TCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTG                >  SRR4302533.5420996/1‑94 (MQ=60)
                                                                               TCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTG                >  SRR4302533.3122242/1‑94 (MQ=60)
                                                                               TCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTG                >  SRR4302533.1220064/1‑94 (MQ=60)
                                                                                  CCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTC             >  SRR4302533.5584043/1‑94 (MQ=60)
                                                                                  CCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTC             >  SRR4302533.5317450/1‑94 (MQ=60)
                                                                                   CTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCA            <  SRR4302533.4205081/94‑1 (MQ=60)
                                                                                   CTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCA            >  SRR4302533.603859/1‑94 (MQ=60)
                                                                                    TGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAA           >  SRR4302533.3107998/1‑94 (MQ=60)
                                                                                     GCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTACCCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAAT          <  SRR4302533.784962/94‑1 (MQ=60)
                                                                                      CACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATG         <  SRR4302533.227175/94‑1 (MQ=60)
                                                                                      CACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATG         <  SRR4302533.793811/94‑1 (MQ=60)
                                                                                       ACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGC        <  SRR4302533.3535139/94‑1 (MQ=60)
                                                                                       ACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGC        <  SRR4302533.1630259/94‑1 (MQ=60)
                                                                                       ACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGC        >  SRR4302533.1964855/1‑94 (MQ=60)
                                                                                       ACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGC        >  SRR4302533.2129553/1‑94 (MQ=60)
                                                                                       ACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGC        >  SRR4302533.5610538/1‑94 (MQ=60)
                                                                                       ACCAGGCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGC        <  SRR4302533.550147/94‑1 (MQ=60)
                                                                                        CCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCG       >  SRR4302533.4683506/1‑94 (MQ=60)
                                                                                        CCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCG       <  SRR4302533.1710680/94‑1 (MQ=60)
                                                                                          AGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCGCT     <  SRR4302533.3719911/94‑1 (MQ=60)
                                                                                           GTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCGCTC    <  SRR4302533.4559554/94‑1 (MQ=60)
                                                                                           GTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCGCTC    <  SRR4302533.1449785/94‑1 (MQ=60)
                                                                                            TCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCTCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCGCTCG   <  SRR4302533.3155894/94‑1 (MQ=60)
                                                                                             CCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCGCTCGA  >  SRR4302533.2085173/1‑94 (MQ=60)
                                                                                             CCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCGCTCGA  <  SRR4302533.482990/94‑1 (MQ=60)
                                                                                             |                                                                                             
GCCATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTTCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCGCTCGA  >  NC_000913/2306163‑2306349

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑