Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,317,837 |
T→C |
A4A (GCA→GCG) |
rcsC ← |
RcsC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,317,837 | 0 | T | C | 100.0%
| 780.2
/ NA
| 240 | A4A (GCA→GCG) | rcsC | RcsC |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (116/124); total (116/124) |
Only 100 of 245 total aligned reads displayed.
CTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGAT > NC_000913/2317747‑2317926
|
tGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGct > 1:1054590/1‑93 (MQ=255)
tGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGct < 1:5094562/93‑1 (MQ=255)
tGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGct < 2:3734499/93‑1 (MQ=255)
tGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGct > 2:4728973/1‑93 (MQ=255)
tGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGct > 2:5880699/1‑93 (MQ=255)
tGACGAATTTCAGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGACAGAGCACTAACGCCAACGct > 2:4188384/1‑93 (MQ=255)
gAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGa > 2:780308/1‑93 (MQ=255)
aaTTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGaa < 2:4456530/93‑1 (MQ=255)
aTTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAAc < 2:677624/93‑1 (MQ=255)
tttCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACa > 1:806876/1‑93 (MQ=255)
tCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATg < 2:5550848/93‑1 (MQ=255)
ccGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGt < 2:1313938/93‑1 (MQ=255)
cGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTa < 1:3676726/93‑1 (MQ=255)
cGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTa < 2:6287676/93‑1 (MQ=255)
gATTCTCGCTGATGTAACGCATTAACGATGTAAAAACCGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAg < 2:4059892/93‑1 (MQ=255)
gATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAg < 1:5435624/93‑1 (MQ=255)
gATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAg > 1:5980406/1‑93 (MQ=255)
gATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAg > 2:1027154/1‑93 (MQ=255)
aTTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAgc > 1:3633742/1‑93 (MQ=255)
tctcGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAgcgc < 1:3025543/93‑1 (MQ=255)
tctcGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAgcgc > 2:1975047/1‑93 (MQ=255)
tcGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGa > 1:481313/1‑93 (MQ=255)
tcGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGa > 2:65159/1‑93 (MQ=255)
tcGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGa > 2:2331161/1‑93 (MQ=255)
tcGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGa < 1:370582/93‑1 (MQ=255)
cGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAg < 2:1658074/93‑1 (MQ=255)
tGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCATAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCt > 2:5523715/1‑93 (MQ=255)
tGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCt < 1:4721600/93‑1 (MQ=255)
gATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCtt < 2:1362110/93‑1 (MQ=255)
gATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCtt > 2:5036015/1‑93 (MQ=255)
aTGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCttt > 1:2615988/1‑93 (MQ=255)
gTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCa > 1:5657375/1‑93 (MQ=255)
gTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCa < 1:194065/93‑1 (MQ=255)
aaCGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAgg < 2:2313255/93‑1 (MQ=255)
aaCGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAgg < 1:5170128/93‑1 (MQ=255)
aCGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAggg < 2:1675607/93‑1 (MQ=255)
aCGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAggg < 2:2749449/93‑1 (MQ=255)
cGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGt < 1:4233533/93‑1 (MQ=255)
aTTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGt > 1:717363/1‑93 (MQ=255)
aCGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGa > 2:5905381/1‑93 (MQ=255)
gATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGaaa > 2:669782/1‑93 (MQ=255)
tGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAaag > 1:2174919/1‑93 (MQ=255)
gTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAaaga < 2:262830/93‑1 (MQ=255)
gTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAaaga < 1:376585/93‑1 (MQ=255)
tAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAaagaa < 1:4526944/93‑1 (MQ=255)
aaaaaaCGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAaagaag < 1:6038844/93‑1 (MQ=255)
aaaCGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCaa < 2:296479/93‑1 (MQ=255)
aaaCGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCaa < 1:1386824/93‑1 (MQ=255)
aCGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAgg < 2:3560348/93‑1 (MQ=255)
cGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGt < 2:866388/93‑1 (MQ=255)
cGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGt < 1:384213/93‑1 (MQ=255)
gATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTAt < 1:3189531/93‑1 (MQ=255)
gATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTAt < 2:4851593/93‑1 (MQ=255)
aTGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTTCGAAAAGAAGCAAGGTAtt < 1:1164067/93‑1 (MQ=255)
aTGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTAtt < 2:610489/93‑1 (MQ=255)
aTGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTAtt < 1:3153471/93‑1 (MQ=255)
aTGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTAtt > 2:5142022/1‑93 (MQ=255)
tGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTAttt > 1:2508877/1‑93 (MQ=255)
tGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTAttt > 1:22599/1‑93 (MQ=255)
tGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTAttt > 2:5102854/1‑93 (MQ=255)
aaaaaGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCa > 2:109179/1‑93 (MQ=255)
aaaaaGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCa > 1:411357/1‑93 (MQ=255)
aaaGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCaaa > 1:5554084/1‑93 (MQ=255)
aaaGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCaaa < 1:4596247/93‑1 (MQ=255)
aaaGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCaaa > 2:5242237/1‑93 (MQ=255)
aaaGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCaaa < 1:2870727/93‑1 (MQ=255)
aaaGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCaaa < 2:3127823/93‑1 (MQ=255)
aaaGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCaaa < 2:328119/93‑1 (MQ=255)
aaaGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCaaa < 1:3333417/93‑1 (MQ=255)
aaaGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCaaa < 1:3457814/93‑1 (MQ=255)
aaGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAg > 2:2799446/1‑93 (MQ=255)
aGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAgg < 2:2661203/93‑1 (MQ=255)
cAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAgggg > 1:2329460/1‑93 (MQ=255)
cAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAgggg < 2:3927154/93‑1 (MQ=255)
aaTCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGc < 1:3946546/93‑1 (MQ=255)
aaTCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGc > 1:6079454/1‑93 (MQ=255)
aTCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCg > 2:1529179/1‑93 (MQ=255)
aaCAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAg < 1:758489/93‑1 (MQ=255)
aaCAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAg > 1:2058270/1‑93 (MQ=255)
aaCAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAg < 2:6172469/93‑1 (MQ=255)
gCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTcc > 1:4386597/1‑93 (MQ=255)
ccAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCg < 2:4698012/93‑1 (MQ=255)
cAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGc > 1:4366628/1‑93 (MQ=255)
agagCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGcc > 2:1607222/1‑93 (MQ=255)
gagCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCt > 2:1945829/1‑93 (MQ=255)
gagCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCt > 1:1725239/1‑93 (MQ=255)
agCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTc < 1:3574241/93‑1 (MQ=255)
agCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTc > 2:5762678/1‑93 (MQ=255)
gCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCa < 2:1389431/93‑1 (MQ=255)
gCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCa < 1:1600619/93‑1 (MQ=255)
cTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGt > 2:1566859/1‑93 (MQ=255)
cTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGt < 2:1441583/93‑1 (MQ=255)
cTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGt > 2:4316501/1‑93 (MQ=255)
cTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGt < 1:4034252/93‑1 (MQ=255)
tAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTg > 2:3432448/1‑93 (MQ=255)
aCGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGAc < 1:1521864/93‑1 (MQ=255)
ccAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGa < 2:3595728/93‑1 (MQ=255)
ccAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGa > 1:1712189/1‑93 (MQ=255)
ccAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGa < 2:2060952/93‑1 (MQ=255)
cAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGAt < 2:3311981/93‑1 (MQ=255)
|
CTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGAT > NC_000913/2317747‑2317926
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGA > NC_000913/2317746‑2317929
|
CCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGC > SRR4302533.202585/1‑94 (MQ=60)
CTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCT > SRR4302533.1060797/1‑94 (MQ=60)
TGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTC > SRR4302533.292523/1‑94 (MQ=60)
TGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTC < SRR4302533.5125338/94‑1 (MQ=60)
CGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGA > SRR4302533.4834958/1‑94 (MQ=60)
ATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACA > SRR4302533.811618/1‑94 (MQ=60)
ATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACA > SRR4302533.5088711/1‑94 (MQ=60)
TTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACAT < SRR4302533.3459768/94‑1 (MQ=60)
TTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACAT < SRR4302533.351740/94‑1 (MQ=60)
TTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACAT < SRR4302533.945714/94‑1 (MQ=60)
TTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATG > SRR4302533.752188/1‑94 (MQ=60)
TTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATG > SRR4302533.2188309/1‑94 (MQ=60)
TCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGT > SRR4302533.3718762/1‑94 (MQ=60)
TCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGT < SRR4302533.3117576/94‑1 (MQ=60)
TCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGT < SRR4302533.648942/94‑1 (MQ=60)
TCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAACAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGT > SRR4302533.470194/1‑94 (MQ=60)
CCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTA < SRR4302533.5680675/94‑1 (MQ=60)
CCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTA < SRR4302533.1352430/94‑1 (MQ=60)
CGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAG < SRR4302533.4213751/94‑1 (MQ=60)
CGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAG < SRR4302533.3699323/94‑1 (MQ=60)
CGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAG > SRR4302533.2698536/1‑94 (MQ=60)
CGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAG > SRR4302533.2539182/1‑94 (MQ=60)
CGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAG < SRR4302533.4038507/94‑1 (MQ=60)
CGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAG > SRR4302533.6016628/1‑94 (MQ=60)
GATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGC < SRR4302533.4239761/94‑1 (MQ=60)
GATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGC > SRR4302533.3656092/1‑94 (MQ=60)
GATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGC < SRR4302533.5468359/94‑1 (MQ=60)
TTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGC < SRR4302533.2518144/94‑1 (MQ=60)
TCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCG < SRR4302533.3044056/94‑1 (MQ=60)
CTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGA > SRR4302533.484188/1‑94 (MQ=60)
CTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGA > SRR4302533.3988319/1‑94 (MQ=60)
TCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAG < SRR4302533.372820/94‑1 (MQ=60)
CGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGG < SRR4302533.5200407/94‑1 (MQ=60)
CGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGCAGCGCGAGC > SRR4302533.884021/1‑94 (MQ=60)
GCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGC > SRR4302533.1748259/1‑94 (MQ=60)
CTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACCAACGCCAACGCTCTGAACATGTAGCGCGAGGCT > SRR4302533.2189359/1‑94 (MQ=60)
TGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTT < SRR4302533.5655643/94‑1 (MQ=60)
TGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTT < SRR4302533.4750228/94‑1 (MQ=60)
TATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTT < SRR4302533.453637/94‑1 (MQ=60)
GATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTT > SRR4302533.2632045/1‑94 (MQ=60)
GATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTT < SRR4302533.2492767/94‑1 (MQ=60)
TGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCA > SRR4302533.5691560/1‑94 (MQ=60)
TGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCA > SRR4302533.1158578/1‑94 (MQ=60)
GTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAG < SRR4302533.5251086/94‑1 (MQ=60)
GTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAG < SRR4302533.195291/94‑1 (MQ=60)
AACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGG < SRR4302533.5201331/94‑1 (MQ=60)
CGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTT < SRR4302533.4259115/94‑1 (MQ=60)
GCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCACCGCTCTGAACATGTAGCGCGAGGATTTCAGGGTTG > SRR4302533.3899017/1‑94 (MQ=60)
GCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTG < SRR4302533.6042418/94‑1 (MQ=60)
CATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGT > SRR4302533.5405436/1‑94 (MQ=60)
CATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGT < SRR4302533.3742232/94‑1 (MQ=60)
CATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGT > SRR4302533.3678676/1‑94 (MQ=60)
CATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGT > SRR4302533.721594/1‑94 (MQ=60)
CATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGT < SRR4302533.3317672/94‑1 (MQ=60)
ATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGCACATGTAGCGCGAGGCTTTCAGGGTTGTA > SRR4302533.440382/1‑94 (MQ=60)
AACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGA < SRR4302533.5986153/94‑1 (MQ=60)
AACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGA < SRR4302533.3247129/94‑1 (MQ=60)
CGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAA > SRR4302533.6103846/1‑94 (MQ=60)
ATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAG > SRR4302533.2188322/1‑94 (MQ=60)
ATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAG < SRR4302533.4652961/94‑1 (MQ=60)
ATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAG > SRR4302533.5503562/1‑94 (MQ=60)
TGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCGACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGA > SRR4302533.1416139/1‑94 (MQ=60)
TGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGA < SRR4302533.3159971/94‑1 (MQ=60)
GTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAA < SRR4302533.378858/94‑1 (MQ=60)
GTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAA > SRR4302533.4080457/1‑94 (MQ=60)
TAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAG < SRR4302533.4554354/94‑1 (MQ=60)
TAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAG < SRR4302533.1829013/94‑1 (MQ=60)
TAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAG < SRR4302533.2727911/94‑1 (MQ=60)
AAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGC < SRR4302533.6075440/94‑1 (MQ=60)
AAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCA < SRR4302533.1692305/94‑1 (MQ=60)
AAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAA > SRR4302533.4293907/1‑94 (MQ=60)
AAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAG < SRR4302533.1395170/94‑1 (MQ=60)
CGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTA < SRR4302533.4559060/94‑1 (MQ=60)
CGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTA < SRR4302533.386531/94‑1 (MQ=60)
GATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATT < SRR4302533.3209150/94‑1 (MQ=60)
ATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTTCGAAAAGAAGCAAGGTATTT < SRR4302533.1171048/94‑1 (MQ=60)
ATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTT > SRR4302533.22749/1‑94 (MQ=60)
ATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTT < SRR4302533.3172856/94‑1 (MQ=60)
ATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTT > SRR4302533.2524335/1‑94 (MQ=60)
TGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTC < SRR4302533.356816/94‑1 (MQ=60)
GAAAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCA > SRR4302533.413824/1‑94 (MQ=60)
AAAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAA > SRR4302533.5587625/1‑94 (MQ=60)
AAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAG < SRR4302533.3354015/94‑1 (MQ=60)
AAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAG < SRR4302533.2888391/94‑1 (MQ=60)
AAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAG < SRR4302533.3479160/94‑1 (MQ=60)
AAAGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAG < SRR4302533.4624090/94‑1 (MQ=60)
AANCNANCAACAGCCAGAGNACNAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGANGCAAGGTATTTCAAAGG < SRR4302533.3785286/94‑1 (MQ=60)
AGCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGG > SRR4302533.2304330/1‑94 (MQ=60)
GCAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGG > SRR4302533.2343882/1‑94 (MQ=60)
CAATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGC > SRR4302533.6116221/1‑94 (MQ=60)
AATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCG < SRR4302533.3970615/94‑1 (MQ=60)
AATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCG > SRR4302533.1586373/1‑94 (MQ=60)
ATCAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGA > SRR4302533.3612629/1‑94 (MQ=60)
CAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAG > SRR4302533.2070960/1‑94 (MQ=60)
CAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAG > SRR4302533.1642199/1‑94 (MQ=60)
CAACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAG > SRR4302533.4449870/1‑94 (MQ=60)
AACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGC < SRR4302533.762954/94‑1 (MQ=60)
AACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGC > SRR4302533.747829/1‑94 (MQ=60)
ACAGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCT < SRR4302533.3864442/94‑1 (MQ=60)
AGCCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCC > SRR4302533.4413083/1‑94 (MQ=60)
CCAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGC > SRR4302533.4392987/1‑94 (MQ=60)
CAGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCC > SRR4302533.6115091/1‑94 (MQ=60)
CAGAGCACTAACGCCAACGCTCTCAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCC > SRR4302533.1724623/1‑94 (MQ=60)
AGAGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCT > SRR4302533.1735709/1‑94 (MQ=60)
AGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCA > SRR4302533.3720588/1‑94 (MQ=60)
AGCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCA < SRR4302533.3596271/94‑1 (MQ=60)
GCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAG > SRR4302533.3792822/1‑94 (MQ=60)
GCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAG < SRR4302533.1610308/94‑1 (MQ=60)
GCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAG < SRR4302533.3197943/94‑1 (MQ=60)
GCACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAG < SRR4302533.1432144/94‑1 (MQ=60)
ACTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGT > SRR4302533.2072571/1‑94 (MQ=60)
CTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTG > SRR4302533.5046503/1‑94 (MQ=60)
CTAACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTG < SRR4302533.4058808/94‑1 (MQ=60)
ACGCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACC < SRR4302533.1531026/94‑1 (MQ=60)
GCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGA > SRR4302533.1722565/1‑94 (MQ=60)
GCCAACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGA > SRR4302533.809638/1‑94 (MQ=60)
ACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGA < SRR4302533.3681753/94‑1 (MQ=60)
ACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGA < SRR4302533.531859/94‑1 (MQ=60)
ACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGA < SRR4302533.4274682/94‑1 (MQ=60)
ACGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAACCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGA < SRR4302533.4110600/94‑1 (MQ=60)
|
CCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGA > NC_000913/2317746‑2317929
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
