Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,360,764	A→G	V297A (GTG→GCG)	b2249 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,360,764	0	A	G	100.0%	732.5 / NA	224	V297A (GTG→GCG)	b2249	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (100/124); total (100/124)

Only 100 of 227 total aligned reads displayed.

ACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCC‑CGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAAC  >  NC_000913/2360674‑2360853

 cagccagcGCCATCCCGCAAAAATGTTTGCCC‑CGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCtt                                                                                        <  1:5846412/93‑1 (MQ=255)

     cAGCGCCAGCCCGGCAAAATGGTTGGCC‑CGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTcaca                                                                                    >  1:6296475/1‑93 (MQ=255)

       gcgCCAGCCCGGCAAAATGGTTGGCC‑CGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACg                                                                                  >  2:2293375/3‑93 (MQ=255)

         gCCAGCCCGGCAAAATGGTTGGCC‑CGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGcc                                                                                >  2:625359/1‑93 (MQ=255)

         gCCAGCCCGGCAAAATGGTTGGCC‑CGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGcc                                                                                <  2:5048595/93‑1 (MQ=255)

          ccAGCCCGGCAAAATGGTTGGCC‑CGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCa                                                                               >  1:5572124/1‑93 (MQ=255)

           caccccGGCAAAAGGGTTGCCC‑CGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAg                                                                              <  1:5872531/90‑1 (MQ=255)

           cAGCCCGGCAAAATGGTTGGCC‑CGCCGTTCTGTAATCCAGTGCGCCGCTTGCGCCAGTGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAg                                                                              >  2:2678042/1‑93 (MQ=255)

            aGCCCGGAAAAATGTTTGCCC‑CGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGc                                                                             <  2:2203275/93‑1 (MQ=255)

              cccGGCAAAATGGTTGCCC‑CGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCaa                                                                           <  2:1702916/93‑1 (MQ=255)

               cgggCAAAATGGTTGCCC‑CGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAAt                                                                          <  2:957732/91‑1 (MQ=255)

               ccGGCAAAATGGTTGGCC‑CGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAAt                                                                          >  2:487273/1‑93 (MQ=255)

                 ggaaaaaTGGTGGGCC‑CGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATgg                                                                        <  2:615780/90‑1 (MQ=255)

                 gccAAAATGGTGGCCC‑CGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATgg                                                                        <  1:1007838/91‑1 (MQ=255)

                    aaaaTGGTTGGCC‑CGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGc                                                                     >  1:2956242/1‑93 (MQ=255)

                    aaaaTGGTTGGCC‑CGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGc                                                                     <  1:1731825/93‑1 (MQ=255)

                      aaTGGTTGGCC‑CGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCAc                                                                   >  2:4457103/1‑93 (MQ=255)

                       agggTTGACC‑CGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCAcc                                                                  <  2:5258390/91‑1 (MQ=255)

                       aTGGTTGGCC‑CGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCAcc                                                                  >  1:5744316/1‑93 (MQ=255)

                        tggtggCCC‑CGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCt                                                                 <  2:4915811/93‑1 (MQ=255)

                        aggTTGGCCACGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCAcc                                                                  <  2:5051021/92‑1 (MQ=255)

                         ggTTGCCC‑CGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTg                                                                <  1:4760425/93‑1 (MQ=255)

                         ggTGGGCC‑CGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTg                                                                <  1:5289411/93‑1 (MQ=255)

                          gTTGGCC‑CGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTgc                                                               <  1:1006641/93‑1 (MQ=255)

                          gTTGGCC‑CGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTgc                                                               <  1:691815/93‑1 (MQ=255)

                          gTTGCCC‑CGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTgc                                                               <  1:2898460/93‑1 (MQ=255)

                                   gccgTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGaaa                                                       <  2:2611551/93‑1 (MQ=255)

                                   gccgTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGaaa                                                       >  2:1091124/1‑93 (MQ=255)

                                    ccgTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAg                                                      <  1:3787353/93‑1 (MQ=255)

                                     cgTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGt                                                     <  1:4678299/93‑1 (MQ=255)

                                      gTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGtt                                                    >  1:4134018/1‑93 (MQ=255)

                                      gTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGtt                                                    >  1:3593344/1‑93 (MQ=255)

                                      gTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGtt                                                    >  2:1394461/1‑93 (MQ=255)

                                       ttCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTg                                                   >  2:2078648/1‑93 (MQ=255)

                                        tCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGc                                                  >  1:2225915/1‑93 (MQ=255)

                                        tCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGc                                                  <  1:360151/93‑1 (MQ=255)

                                           gTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCaaa                                               <  2:5477082/93‑1 (MQ=255)

                                            tAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAg                                              >  1:6282175/1‑93 (MQ=255)

                                             aaTCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGc                                             >  2:1577464/1‑93 (MQ=255)

                                             aaTCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGc                                             <  2:310607/93‑1 (MQ=255)

                                               tCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCa                                           >  1:2141543/1‑93 (MQ=255)

                                                ccAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCaa                                          >  2:2914988/1‑93 (MQ=255)

                                                ccAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCaa                                          >  2:4337726/1‑93 (MQ=255)

                                                ccAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCaa                                          <  2:4886708/93‑1 (MQ=255)

                                                 cAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAAt                                         <  1:1059891/93‑1 (MQ=255)

                                                 cAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAAt                                         >  2:4519849/1‑93 (MQ=255)

                                                 cAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAAt                                         <  2:1120943/93‑1 (MQ=255)

                                                 cAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAATTGCAAAGCCAAt                                         <  2:1830262/93‑1 (MQ=255)

                                                  aGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATa                                        >  2:4260255/1‑93 (MQ=255)

                                                    tGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATaaa                                      <  1:821019/93‑1 (MQ=255)

                                                     gcgcAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAac                                     >  2:3758216/1‑93 (MQ=255)

                                                     gcgcAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAac                                     <  2:1021293/93‑1 (MQ=255)

                                                     gcgcAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAac                                     <  1:2499037/93‑1 (MQ=255)

                                                     gcgcAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAac                                     >  2:5104159/1‑93 (MQ=255)

                                                      cgcAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAacc                                    <  1:1882589/93‑1 (MQ=255)

                                                       gcAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAacca                                   <  1:3393687/93‑1 (MQ=255)

                                                       gcAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAacca                                   <  1:5287026/93‑1 (MQ=255)

                                                        cAGTTTGCTCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAaccac                                  <  2:1603218/93‑1 (MQ=255)

                                                         aGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAaccacc                                 >  2:920410/1‑93 (MQ=255)

                                                           tttGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCgg                               >  1:2060611/1‑93 (MQ=255)

                                                            ttGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGt                              <  2:5738293/93‑1 (MQ=255)

                                                            ttGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGACAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAACCCACCGGt                              <  1:5657058/93‑1 (MQ=255)

                                                             tGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTg                             <  2:3303739/93‑1 (MQ=255)

                                                              gcgcCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGa                            <  1:87707/93‑1 (MQ=255)

                                                                gcCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAAt                          <  1:1241943/93‑1 (MQ=255)

                                                                 ccAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAAtt                         <  2:3446494/93‑1 (MQ=255)

                                                                 ccAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGCGCAtt                         >  1:3974658/1‑93 (MQ=255)

                                                                  cAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTg                        <  2:2570334/93‑1 (MQ=255)

                                                                   aGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTgc                       >  1:3669824/1‑93 (MQ=255)

                                                                   aGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTgc                       <  1:84021/93‑1 (MQ=255)

                                                                    gggTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTgct                      <  1:1746141/93‑1 (MQ=255)

                                                                    gggTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACAGGTGAATTgct                      >  2:471582/1‑93 (MQ=255)

                                                                     ggTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTgctc                     <  1:5852558/93‑1 (MQ=255)

                                                                     ggTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTgctc                     >  1:5257865/1‑93 (MQ=255)

                                                                     ggTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTgctc                     <  1:4529026/93‑1 (MQ=255)

                                                                     ggTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTgctc                     >  1:3950962/1‑93 (MQ=255)

                                                                     gatttCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTgctc                     <  1:1824466/91‑1 (MQ=255)

                                                                      gTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGAGAATTgctcg                    >  1:2637724/1‑93 (MQ=255)

                                                                       tttCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTgctcgc                   >  1:53766/1‑93 (MQ=255)

                                                                         tcctccTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTgctcgctc                 >  1:4268807/1‑93 (MQ=255)

                                                                         tcctccTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTgctcgctc                 >  2:6297952/1‑93 (MQ=255)

                                                                         tcctccTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTgctcgctc                 <  1:2365367/93‑1 (MQ=255)

                                                                          cctcctGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCa                >  1:5088916/1‑93 (MQ=255)

                                                                          cctcctGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCa                >  1:3493712/1‑93 (MQ=255)

                                                                          cctcctGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCa                <  1:612617/93‑1 (MQ=255)

                                                                            tcctGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACTACCGGTGAATTGCTCGTTCaag              >  2:5702290/1‑92 (MQ=255)

                                                                            tcctGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAAc              >  2:3991787/1‑93 (MQ=255)

                                                                            tcctGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAAc              <  2:858459/93‑1 (MQ=255)

                                                                            tcctGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAAc              >  1:4929976/1‑93 (MQ=255)

                                                                            tcctGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAAc              >  1:3711752/1‑93 (MQ=255)

                                                                             cctGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACg             >  1:6012602/1‑93 (MQ=255)

                                                                               tgtgAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTc           >  2:3579071/1‑93 (MQ=255)

                                                                               tgtgAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTc           >  2:78802/1‑93 (MQ=255)

                                                                               tgtgAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTc           >  2:1901694/1‑93 (MQ=255)

                                                                                gtgAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCa          <  1:4172385/93‑1 (MQ=255)

                                                                                  gAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAgg        <  2:1241422/93‑1 (MQ=255)

                                                                                   aaGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGc       <  1:2175407/93‑1 (MQ=255)

                                                                                    aGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCt      <  1:997976/93‑1 (MQ=255)

                                                                                     ggAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTg     >  2:3341114/1‑93 (MQ=255)

                                                                                       aaCCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGaa   <  2:2408592/93‑1 (MQ=255)

ACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCC‑CGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAAC  >  NC_000913/2360674‑2360853

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGGC  >  NC_000913/2360673‑2360857

AACAGCCAGCGCCAGCCCGGAAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCT                                                                                             <  SRR4302533.6329522/94‑1 (MQ=60)

 ACAGCCAGCGCCAGCCGGGAAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTT                                                                                            <  SRR4302533.2730858/94‑1 (MQ=60)

  cggccagcgcgaccccgaCAAAATGGTGGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTC                                                                                           <  SRR4302533.5319240/76‑1 (MQ=60)

  CAGCCAGCGCCATCCCGCAAAAATGTTTGCCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTC                                                                                           <  SRR4302533.5881757/94‑1 (MQ=60)

    gccgccGCCAGCCCGGCAAAATGGTTGCCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCAC                                                                                         <  SRR4302533.2051496/88‑1 (MQ=60)

     CCAGCGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACA                                                                                        >  SRR4302533.6334041/1‑94 (MQ=60)

      cagcgacggcaCGGCAAAATGGGTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACAC                                                                                       <  SRR4302533.6313954/83‑1 (MQ=60)

          GCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCA                                                                                   >  SRR4302533.5605800/1‑94 (MQ=60)

            CACCCCGGCAAAAGGGTTGCCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGC                                                                                 <  SRR4302533.5908027/94‑1 (MQ=60)

               CCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAAT                                                                              >  SRR4302533.1094358/1‑94 (MQ=60)

                cgggaaaaatgttggcCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATG                                                                             <  SRR4302533.5811778/78‑1 (MQ=60)

                CCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATG                                                                             >  SRR4302533.739162/1‑94 (MQ=60)

                 CGGCAAAATGGTTGCCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGG                                                                            <  SRR4302533.1887458/94‑1 (MQ=60)

                  GGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGA                                                                           >  SRR4302533.3021616/1‑94 (MQ=60)

                  GGCAAAAGGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGA                                                                           <  SRR4302533.871344/94‑1 (MQ=60)

                  GCCAAAATGGTGGCCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGA                                                                           <  SRR4302533.1013733/94‑1 (MQ=60)

                  GACAAAGTGGTTGTCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGA                                                                           <  SRR4302533.3621741/94‑1 (MQ=60)

                   ACAAAATGGTGGCCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAG                                                                          <  SRR4302533.6127164/94‑1 (MQ=60)

                    CAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGC                                                                         >  SRR4302533.2974314/1‑94 (MQ=60)

                     AAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCA                                                                        <  SRR4302533.1742325/94‑1 (MQ=60)

                     AAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCA                                                                        <  SRR4302533.5205932/94‑1 (MQ=60)

                       AATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACC                                                                      >  SRR4302533.5778977/1‑94 (MQ=60)

                       AATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACC                                                                      >  SRR4302533.801793/1‑94 (MQ=60)

                       AATGGTGGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACC                                                                      <  SRR4302533.837345/94‑1 (MQ=60)

                        agggtggcCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCT                                                                     <  SRR4302533.2949097/86‑1 (MQ=60)

                        ATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCT                                                                     <  SRR4302533.1042998/94‑1 (MQ=60)

                        ATGGTTGCCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCT                                                                     <  SRR4302533.652714/94‑1 (MQ=60)

                        ATGGTGGTCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCT                                                                     <  SRR4302533.2642018/94‑1 (MQ=60)

                        ATGGTCAGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGTGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCT                                                                     <  SRR4302533.4067084/94‑1 (MQ=60)

                          GGTTGCCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGC                                                                   <  SRR4302533.4789305/94‑1 (MQ=60)

                          GGTGGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGC                                                                   <  SRR4302533.5321089/94‑1 (MQ=60)

                           GTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCG                                                                  <  SRR4302533.1012532/94‑1 (MQ=60)

                           GTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCG                                                                  <  SRR4302533.695902/94‑1 (MQ=60)

                           GTTGCCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCG                                                                  <  SRR4302533.2916274/94‑1 (MQ=60)

                           GTGGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCG                                                                  <  SRR4302533.2916275/94‑1 (MQ=60)

                             tgcccggcctTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCT                                                                <  SRR4302533.2528933/84‑1 (MQ=60)

                               CCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAG                                                              <  SRR4302533.4385325/94‑1 (MQ=60)

                                 CCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAA                                                            <  SRR4302533.3765739/94‑1 (MQ=60)

                                 CCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAA                                                            <  SRR4302533.361396/94‑1 (MQ=60)

                                  CGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAA                                                           >  SRR4302533.2336815/1‑94 (MQ=60)

                                    CCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGT                                                         <  SRR4302533.3810543/94‑1 (MQ=60)

                                    CCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGT                                                         <  SRR4302533.5902214/94‑1 (MQ=60)

                                     CGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTT                                                        >  SRR4302533.4159110/1‑94 (MQ=60)

                                     CGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTT                                                        <  SRR4302533.4706651/94‑1 (MQ=60)

                                     CGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTT                                                        >  SRR4302533.3615456/1‑94 (MQ=60)

                                     CGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTT                                                        >  SRR4302533.1381523/1‑94 (MQ=60)

                                      GTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTG                                                       >  SRR4302533.4632625/1‑94 (MQ=60)

                                      GTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTG                                                       <  SRR4302533.941673/94‑1 (MQ=60)

                                      GTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTG                                                       <  SRR4302533.2236602/94‑1 (MQ=60)

                                       TTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGC                                                      >  SRR4302533.2239655/1‑94 (MQ=60)

                                        TCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCA                                                     <  SRR4302533.362341/94‑1 (MQ=60)

                                         CTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAA                                                    >  SRR4302533.1806832/1‑94 (MQ=60)

                                         CTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAA                                                    >  SRR4302533.6325073/1‑94 (MQ=60)

                                           GTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAG                                                  >  SRR4302533.6319669/1‑94 (MQ=60)

                                              ATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCA                                               >  SRR4302533.2154741/1‑94 (MQ=60)

                                               TCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAA                                              <  SRR4302533.4177288/94‑1 (MQ=60)

                                                CCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAAT                                             <  SRR4302533.3469326/94‑1 (MQ=60)

                                                CCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAAT                                             >  SRR4302533.1750411/1‑94 (MQ=60)

                                                 CAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATA                                            <  SRR4302533.1066122/94‑1 (MQ=60)

                                                  AGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAA                                           <  SRR4302533.1013136/94‑1 (MQ=60)

                                                   GTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAA                                          <  SRR4302533.3896488/94‑1 (MQ=60)

                                                    TGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAAC                                         <  SRR4302533.825834/94‑1 (MQ=60)

                                                    TGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAAC                                         <  SRR4302533.5304380/94‑1 (MQ=60)

                                                    TGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAAC                                         <  SRR4302533.4675134/94‑1 (MQ=60)

                                                     GCGCAGTTTGTGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACC                                        <  SRR4302533.245199/94‑1 (MQ=60)

                                                     GCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACC                                        <  SRR4302533.481859/94‑1 (MQ=60)

                                                     GCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACC                                        <  SRR4302533.5702071/94‑1 (MQ=60)

                                                     GCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACC                                        <  SRR4302533.2514453/94‑1 (MQ=60)

                                                      CGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCA                                       <  SRR4302533.1894051/94‑1 (MQ=60)

                                                      CGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCA                                       >  SRR4302533.5449004/1‑94 (MQ=60)

                                                      CGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCA                                       >  SRR4302533.2346535/1‑94 (MQ=60)

                                                       GCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCAC                                      <  SRR4302533.5318694/94‑1 (MQ=60)

                                                       GCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCAC                                      <  SRR4302533.2718287/94‑1 (MQ=60)

                                                       GCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCAC                                      <  SRR4302533.3414646/94‑1 (MQ=60)

                                                       GCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCAC                                      <  SRR4302533.5603810/94‑1 (MQ=60)

                                                        CAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGCAAGTTGCAAAGCCAATAAACCACC                                     >  SRR4302533.1905846/1‑94 (MQ=60)

                                                        CAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACC                                     >  SRR4302533.6205104/1‑94 (MQ=60)

                                                         AGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCG                                    <  SRR4302533.5626669/94‑1 (MQ=60)

                                                         AGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCG                                    <  SRR4302533.3726881/94‑1 (MQ=60)

                                                          GTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGG                                   >  SRR4302533.2073318/1‑94 (MQ=60)

                                                           TTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGT                                  >  SRR4302533.1356912/1‑94 (MQ=60)

                                                           TTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGCT                                  <  SRR4302533.5977696/94‑1 (MQ=60)

                                                            TTGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGACAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAACCCACCGGTG                                 <  SRR4302533.5691243/94‑1 (MQ=60)

                                                             TGCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGA                                >  SRR4302533.5831072/1‑94 (MQ=60)

                                                              GCGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAA                               <  SRR4302533.88268/94‑1 (MQ=60)

                                                               CGCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAAT                              >  SRR4302533.5882624/1‑94 (MQ=60)

                                                                GCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATT                             <  SRR4302533.1249363/94‑1 (MQ=60)

                                                                GCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATT                             >  SRR4302533.3518051/1‑94 (MQ=60)

                                                                GCCAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGCGCATT                             >  SRR4302533.3998857/1‑94 (MQ=60)

                                                                  CAGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGC                           >  SRR4302533.3692384/1‑94 (MQ=60)

                                                                   AGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCT                          <  SRR4302533.84555/94‑1 (MQ=60)

                                                                   AGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCT                          >  SRR4302533.2156767/1‑94 (MQ=60)

                                                                   AGGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCT                          >  SRR4302533.4735775/1‑94 (MQ=60)

                                                                    GGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTC                         >  SRR4302533.5289436/1‑94 (MQ=60)

                                                                    GGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTC                         >  SRR4302533.3975048/1‑94 (MQ=60)

                                                                    GGGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTC                         <  SRR4302533.1756762/94‑1 (MQ=60)

                                                                     GGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCG                        <  SRR4302533.5887941/94‑1 (MQ=60)

                                                                     GGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCG                        >  SRR4302533.5334299/1‑94 (MQ=60)

                                                                     GGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCG                        <  SRR4302533.4556454/94‑1 (MQ=60)

                                                                     GGTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGAGAATTGCTCG                        >  SRR4302533.2653935/1‑94 (MQ=60)

                                                                     GATTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCG                        <  SRR4302533.1835611/94‑1 (MQ=60)

                                                                      GTTTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGC                       >  SRR4302533.54129/1‑94 (MQ=60)

                                                                        TTCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTC                     >  SRR4302533.4294505/1‑94 (MQ=60)

                                                                         TCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCA                    >  SRR4302533.3515264/1‑94 (MQ=60)

                                                                         TCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCA                    <  SRR4302533.2099479/94‑1 (MQ=60)

                                                                         TCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCA                    <  SRR4302533.2380001/94‑1 (MQ=60)

                                                                         TCCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCA                    >  SRR4302533.5119663/1‑94 (MQ=60)

                                                                          CCTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAA                   <  SRR4302533.616218/94‑1 (MQ=60)

                                                                           CTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAAC                  >  SRR4302533.4959830/1‑94 (MQ=60)

                                                                           CTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAAC                  >  SRR4302533.3734547/1‑94 (MQ=60)

                                                                           CTCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAAC                  >  SRR4302533.58303/1‑94 (MQ=60)

                                                                            TCCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACG                 >  SRR4302533.6049028/1‑94 (MQ=60)

                                                                             CCTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGT                <  SRR4302533.374090/94‑1 (MQ=60)

                                                                              CTGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTC               >  SRR4302533.4225642/1‑94 (MQ=60)

                                                                               TGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCA              <  SRR4302533.3635799/94‑1 (MQ=60)

                                                                               TGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCA              <  SRR4302533.3976020/94‑1 (MQ=60)

                                                                               TGTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCA              >  SRR4302533.403467/1‑94 (MQ=60)

                                                                                GTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAG             >  SRR4302533.6136897/1‑94 (MQ=60)

                                                                                GTGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAG             <  SRR4302533.4197667/94‑1 (MQ=60)

                                                                                 TGAAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGG            >  SRR4302533.5108206/1‑94 (MQ=60)

                                                                                   AAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCT          <  SRR4302533.5253283/94‑1 (MQ=60)

                                                                                   AAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCT          <  SRR4302533.904843/94‑1 (MQ=60)

                                                                                   AAGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCT          <  SRR4302533.2188814/94‑1 (MQ=60)

                                                                                    AGGAACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTG         <  SRR4302533.1003804/94‑1 (MQ=60)

                                                                                       AACCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAAC      >  SRR4302533.1911880/1‑94 (MQ=60)

                                                                                         CCGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTG    <  SRR4302533.255365/94‑1 (MQ=60)

                                                                                          CGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGG   >  SRR4302533.2343272/1‑94 (MQ=60)

                                                                                          CGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGG   <  SRR4302533.37940/94‑1 (MQ=60)

                                                                                          CGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGG   <  SRR4302533.6237964/94‑1 (MQ=60)

                                                                                          CGCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGG   >  SRR4302533.939370/1‑94 (MQ=60)

                                                                                           GCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGGC  >  SRR4302533.2340126/1‑94 (MQ=60)

                                                                                           GCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTACAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGGC  >  SRR4302533.2971904/1‑94 (MQ=60)

                                                                                           CCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGGC  <  SRR4302533.1628170/94‑1 (MQ=60)

AACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGGC  >  NC_000913/2360673‑2360857

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`