Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,406,831	A→G	intergenic (+33/‑51)	b2290 → / → b2291	putative aminotransferase/putative alpha helix protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,406,831	0	A	G	100.0%	659.4 / NA	206	intergenic (+33/‑51)	b2290/b2291	putative aminotransferase/putative alpha helix protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (117/89); total (117/89)

Only 100 of 254 total aligned reads displayed.

TATCGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGCCTG  >  NC_000913/2406741‑2406920

tatCGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCggcggc                                                                                         >  1:4501212/1‑93 (MQ=255)

   cGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGtt                                                                                      <  1:2275928/93‑1 (MQ=255)

     aGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTAt                                                                                    <  2:5158109/93‑1 (MQ=255)

       cTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATcc                                                                                  >  2:6219648/1‑93 (MQ=255)

       cTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATcc                                                                                  <  1:3560463/93‑1 (MQ=255)

       cTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATcc                                                                                  <  1:4863815/93‑1 (MQ=255)

       cTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATcc                                                                                  <  2:5600723/93‑1 (MQ=255)

        tGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATccc                                                                                 <  2:169891/93‑1 (MQ=255)

         gTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCg                                                                                >  2:3479506/1‑93 (MQ=255)

          tCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGc                                                                               >  2:1148402/1‑93 (MQ=255)

           cTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGcc                                                                              >  2:1256978/1‑93 (MQ=255)

            tttGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCca                                                                             <  1:6292015/93‑1 (MQ=255)

            tttGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCca                                                                             >  2:3736307/1‑93 (MQ=255)

              tGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCcaca                                                                           <  2:1534319/93‑1 (MQ=255)

                 gCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATg                                                                        >  2:2764532/1‑93 (MQ=255)

                  cAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGa                                                                       <  1:1680456/93‑1 (MQ=255)

                   aaGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGAc                                                                      >  2:1554614/1‑93 (MQ=255)

                   aaGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGAc                                                                      <  1:1011540/93‑1 (MQ=255)

                    aGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGAcc                                                                     >  1:270366/1‑93 (MQ=255)

                    aGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGAcc                                                                     <  1:3141343/93‑1 (MQ=255)

                     gTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCt                                                                    <  1:940965/93‑1 (MQ=255)

                     gTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCt                                                                    <  2:5306143/93‑1 (MQ=255)

                     gTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCt                                                                    >  1:4562849/1‑93 (MQ=255)

                       tCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCtga                                                                  <  1:5397277/93‑1 (MQ=255)

                         gcgcgTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCtgatg                                                                >  2:6096138/1‑93 (MQ=255)

                         gcgcgTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCtgatg                                                                >  2:4680945/1‑93 (MQ=255)

                         gcgcgTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGCTATCCCGCCACAATGACCtgatg                                                                >  1:6046935/1‑93 (MQ=255)

                          cgcgTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCGGGCGGCGTTATCCCGCCACAATGACCtgatga                                                               <  1:3855530/93‑1 (MQ=255)

                          cgcgTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCtgatga                                                               <  1:2864649/93‑1 (MQ=255)

                          cgcgTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCtgatga                                                               <  2:262178/93‑1 (MQ=255)

                           gcgTTTCTTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTgatgat                                                              <  1:6114995/93‑1 (MQ=255)

                           gcgTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTgatgat                                                              >  1:2179799/1‑93 (MQ=255)

                           gcgTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTgatgat                                                              >  2:4732376/1‑93 (MQ=255)

                            cgTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGatgatg                                                             >  1:3814716/1‑93 (MQ=255)

                              tttCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGtc                                                           >  2:5893221/1‑93 (MQ=255)

                               ttCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGtca                                                          >  1:4268964/1‑93 (MQ=255)

                                tCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGtcat                                                         >  2:4927246/1‑93 (MQ=255)

                                tCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGtcat                                                         >  1:3762370/1‑93 (MQ=255)

                                 ccTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGtcatc                                                        <  1:1011237/93‑1 (MQ=255)

                                  ttttCGGTTTATCAACACCTGTAATCTTAATTTCACTGCCGGAGATGACACCGGACGGAATTATCCCGCCACAATGACCTGATGATGtcatca                                                       <  2:1946883/92‑1 (MQ=255)

                                  cTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGtcatca                                                       <  1:2537417/93‑1 (MQ=255)

                                  cTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGtcatca                                                       >  1:2356381/1‑93 (MQ=255)

                                  cTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGtcatca                                                       >  1:5771848/1‑93 (MQ=255)

                                   tttCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTcatcat                                                      >  2:1395900/1‑93 (MQ=255)

                                    ttCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATa                                                     >  1:4153705/1‑93 (MQ=255)

                                    ttCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATa                                                     <  2:443332/93‑1 (MQ=255)

                                     tCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATAc                                                    <  2:3019796/93‑1 (MQ=255)

                                     tCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATAc                                                    <  2:866813/93‑1 (MQ=255)

                                      cTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACg                                                   <  1:5228825/93‑1 (MQ=255)

                                        ggTTATCATCACCTGTAATCTTAATTTCAGTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTa                                                 <  1:4929159/93‑1 (MQ=255)

                                         gTTATCATCAGCTGTAATCTTAATTTCACTGCCGGATATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTaa                                                <  2:3310558/93‑1 (MQ=255)

                                          ttATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAg                                               >  2:3417439/1‑93 (MQ=255)

                                          ttATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAg                                               >  2:2054032/1‑93 (MQ=255)

                                            atcatcAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGt                                             <  2:4527375/93‑1 (MQ=255)

                                             tcatcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTc                                            <  2:3924262/93‑1 (MQ=255)

                                              catcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCa                                           >  1:5114409/1‑93 (MQ=255)

                                              catcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCa                                           >  2:2288861/1‑93 (MQ=255)

                                              catcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATACGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCa                                           >  2:3839895/1‑93 (MQ=255)

                                               atcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCAc                                          <  1:606750/93‑1 (MQ=255)

                                               atcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCAc                                          >  1:5648038/1‑93 (MQ=255)

                                                 gaGCTGTAATATTATTTTCGCTGCCGGAGATTGCTTCGGGCGCCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTa                                        <  1:4130834/92‑1 (MQ=255)

                                                 caGTTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTa                                        <  1:2082328/93‑1 (MQ=255)

                                                 caGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTa                                        <  2:744956/93‑1 (MQ=255)

                                                 caGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTa                                        <  1:4143003/93‑1 (MQ=255)

                                                 caGCTGTAATCTAAATTCCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTa                                        <  2:6270227/93‑1 (MQ=255)

                                                     tGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGaa                                    >  2:4055613/1‑93 (MQ=255)

                                                      gTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGaaa                                   >  2:469619/1‑93 (MQ=255)

                                                       tAATCTTACTTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAAc                                  >  2:6139043/1‑93 (MQ=255)

                                                       tAATCTTAATTTCACTGCGGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAAc                                  <  1:824032/93‑1 (MQ=255)

                                                        aaTTTTAATTTCCCTGCGGGAGATGGCATCGGGGGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACa                                 <  1:1597972/93‑1 (MQ=255)

                                                              attttCACTGCGGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCa                           <  1:4621705/91‑1 (MQ=255)

                                                              aaTTTCACTGCCGAAGATTCCACCCGGCGGCCTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCa                           <  1:3067626/93‑1 (MQ=255)

                                                               ttttCACTGCGGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAt                          <  2:1781084/92‑1 (MQ=255)

                                                               aTTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAt                          >  1:3978186/1‑93 (MQ=255)

                                                                tttCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAtt                         >  1:1866243/1‑93 (MQ=255)

                                                                 ttCACTGCGGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAttt                        <  2:2466225/93‑1 (MQ=255)

                                                                 ttCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAttt                        >  2:5822353/1‑93 (MQ=255)

                                                                  tCACTGCGGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAtttt                       <  1:1506643/93‑1 (MQ=255)

                                                                  tCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAtttt                       >  1:5920865/1‑93 (MQ=255)

                                                                   cACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAttttt                      >  1:1268111/1‑93 (MQ=255)

                                                                     cgcacGGAGATTGCAGCAGGCGCCTTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAttttttt                    <  2:1454101/89‑1 (MQ=255)

                                                                     cTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAttttttt                    >  2:4839039/1‑93 (MQ=255)

                                                                     cTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAttttttt                    >  2:4916694/1‑93 (MQ=255)

                                                                     cTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAttttttt                    >  2:802827/1‑93 (MQ=255)

                                                                      tGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTg                   >  2:4017753/1‑93 (MQ=255)

                                                                      tGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTg                   >  1:2669041/1‑93 (MQ=255)

                                                                       gCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGc                  <  2:3177095/93‑1 (MQ=255)

                                                                         cGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGccc                >  2:3150730/1‑93 (MQ=255)

                                                                         cGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGccc                >  1:3401559/1‑93 (MQ=255)

                                                                          ggAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCa               >  2:2741467/1‑93 (MQ=255)

                                                                             gaTTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCAtct            >  2:2886762/1‑93 (MQ=255)

                                                                             gaTTGCAGCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCAtct            <  2:5441712/93‑1 (MQ=255)

                                                                              aTTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCAtctc           >  2:5034145/1‑93 (MQ=255)

                                                                              aTTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCAtctc           <  1:1857289/93‑1 (MQ=255)

                                                                                tccATCCGGCGGCTTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCAtctctc         <  1:3184161/91‑1 (MQ=255)

                                                                                 gCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTcc        <  1:1893254/93‑1 (MQ=255)

                                                                                  cagccGGCGGCTTTACCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTccc       <  1:1184404/90‑1 (MQ=255)

                                                                                  cATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTccc       <  1:1432136/93‑1 (MQ=255)

                                                                                    tCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGc     >  2:3221633/1‑93 (MQ=255)

                                                                                    tCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGc     >  1:1985597/1‑93 (MQ=255)

TATCGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGCCTG  >  NC_000913/2406741‑2406920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGATATCGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGCCTGAAAC  >  NC_000913/2406738‑2406924

TGATATCGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCG                                                                                               >  SRR4302533.79682/1‑94 (MQ=60)

TGATATCGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCG                                                                                               >  SRR4302533.5435557/1‑94 (MQ=60)

TGATATCGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCG                                                                                               <  SRR4302533.3067672/94‑1 (MQ=60)

 GATATCGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGG                                                                                              >  SRR4302533.536781/1‑94 (MQ=60)

 GATATCGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGG                                                                                              >  SRR4302533.5486244/1‑94 (MQ=60)

  ATATCGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGC                                                                                             >  SRR4302533.4528479/1‑94 (MQ=60)

   TATCGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCG                                                                                            >  SRR4302533.4072185/1‑94 (MQ=60)

   TATCGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCG                                                                                            >  SRR4302533.45724/1‑94 (MQ=60)

     TCGAGCTGTCTTTGAGCAAGTTCGCGCGTTTACTTTCTGGTTATCATCAGCTGTAATCTTAATTTCAGTGACGGCGATTGCATCCGTCGGCGTT                                                                                          >  SRR4302533.1897953/1‑94 (MQ=60)

      CGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTA                                                                                         <  SRR4302533.6085626/94‑1 (MQ=60)

      CGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTA                                                                                         <  SRR4302533.2290021/94‑1 (MQ=60)

        AGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATC                                                                                       >  SRR4302533.3829274/1‑94 (MQ=60)

         GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCC                                                                                      <  SRR4302533.4617535/94‑1 (MQ=60)

         GCNGNCNTNGAGCAAGTTCGCGNGTTTCCTTTCTGGTTANCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCC                                                                                      <  SRR4302533.1522454/94‑1 (MQ=60)

          CTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCC                                                                                     <  SRR4302533.4893289/94‑1 (MQ=60)

          CTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCC                                                                                     <  SRR4302533.3582400/94‑1 (MQ=60)

           TGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCG                                                                                    <  SRR4302533.345750/94‑1 (MQ=60)

           TGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCG                                                                                    >  SRR4302533.2447201/1‑94 (MQ=60)

            GTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGC                                                                                   >  SRR4302533.5603607/1‑94 (MQ=60)

            GTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGC                                                                                   <  SRR4302533.934634/94‑1 (MQ=60)

              CTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCA                                                                                 <  SRR4302533.457386/94‑1 (MQ=60)

               TTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCAC                                                                                <  SRR4302533.6329531/94‑1 (MQ=60)

               TTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCAC                                                                                >  SRR4302533.1549624/1‑94 (MQ=60)

                   AGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATG                                                                            <  SRR4302533.1814270/94‑1 (MQ=60)

                     CAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGAC                                                                          <  SRR4302533.1690637/94‑1 (MQ=60)

                     CAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGAC                                                                          <  SRR4302533.1893226/94‑1 (MQ=60)

                      AAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACC                                                                         <  SRR4302533.6195504/94‑1 (MQ=60)

                      AAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACC                                                                         >  SRR4302533.272006/1‑94 (MQ=60)

                      AAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACC                                                                         <  SRR4302533.1017459/94‑1 (MQ=60)

                       AGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCT                                                                        <  SRR4302533.3160657/94‑1 (MQ=60)

                       AGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCT                                                                        >  SRR4302533.4590518/1‑94 (MQ=60)

                        GTTCGCGCGTTTCTTTTCTGGTTATCATCAGGTGTAATCTTAATTTCAGTGCCGGAGTTTGCATCCGGCGGCGTTATCCCGCCACAATGACCTG                                                                       <  SRR4302533.2072977/94‑1 (MQ=60)

                        GTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTG                                                                       <  SRR4302533.946495/94‑1 (MQ=60)

                          TCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGAT                                                                     <  SRR4302533.5429710/94‑1 (MQ=60)

                          TCGCGCGTTTCCTCTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGAT                                                                     <  SRR4302533.3625709/94‑1 (MQ=60)

                           CGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGCTATCCCGCCACAATGACCTGATG                                                                    >  SRR4302533.6083577/1‑94 (MQ=60)

                            GCGCGTTTCCTTTCTGGTTATAATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGA                                                                   <  SRR4302533.2116699/94‑1 (MQ=60)

                             CGCGTTTCTTTTCTGGTTATCAACAGTTGTAATCTTAATTCCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGAT                                                                  <  SRR4302533.2225568/94‑1 (MQ=60)

                             CGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCGGGCGGCGTTATCCCGCCACAATGACCTGATGAT                                                                  <  SRR4302533.3879072/94‑1 (MQ=60)

                             CGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGAT                                                                  >  SRR4302533.2193239/1‑94 (MQ=60)

                             CGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGAT                                                                  >  SRR4302533.6143209/1‑94 (MQ=60)

                             CGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGAT                                                                  <  SRR4302533.2882271/94‑1 (MQ=60)

                              GCGTTTCTTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATG                                                                 <  SRR4302533.6151891/94‑1 (MQ=60)

                              GCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATG                                                                 >  SRR4302533.3838045/1‑94 (MQ=60)

                                GTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTC                                                               >  SRR4302533.2005999/1‑94 (MQ=60)

                                GTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTC                                                               <  SRR4302533.169097/94‑1 (MQ=60)

                                 TTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCTTTATCCCGCCACAATGACCTGATGATGTCA                                                              >  SRR4302533.1714667/1‑94 (MQ=60)

                                 TTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCA                                                              >  SRR4302533.4294662/1‑94 (MQ=60)

                                  TTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCAT                                                             >  SRR4302533.3785434/1‑94 (MQ=60)

                                    CCTTTCTGTTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCTTTATCCCGCCACAATGACCTGATGATGTCATCA                                                           <  SRR4302533.2338464/94‑1 (MQ=60)

                                    CCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCA                                                           >  SRR4302533.5806700/1‑94 (MQ=60)

                                    CCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCA                                                           >  SRR4302533.2370950/1‑94 (MQ=60)

                                    CCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCA                                                           <  SRR4302533.1017154/94‑1 (MQ=60)

                                     CTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCTTTATCCCGCCACAATGACCTGATGATGTCATCAT                                                          <  SRR4302533.5108082/94‑1 (MQ=60)

                                     CTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCAT                                                          <  SRR4302533.2553039/94‑1 (MQ=60)

                                     CTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCAT                                                          >  SRR4302533.5088401/1‑94 (MQ=60)

                                      TTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATA                                                         >  SRR4302533.4178875/1‑94 (MQ=60)

                                       TTCTGGTTATCATCAGCTGTAATCTTATTTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATAC                                                        <  SRR4302533.5892638/94‑1 (MQ=60)

                                        TCTGTTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACG                                                       <  SRR4302533.3728128/94‑1 (MQ=60)

                                         CTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGT                                                      <  SRR4302533.5260280/94‑1 (MQ=60)

                                           GGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAA                                                    <  SRR4302533.1869256/94‑1 (MQ=60)

                                           GGTTATCATCACCTGTAATCTTAATTTCAGTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAA                                                    <  SRR4302533.4959008/94‑1 (MQ=60)

                                             TTATCATCAGCTGTAATCTAAATTTCACTGCCGGAGATTCCCTCCGGCGGCGTTATCCCGCCACAATGCCCTGATGATGTCATCATACGTAAGG                                                  <  SRR4302533.4253728/94‑1 (MQ=60)

                                                TCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCA                                               >  SRR4302533.5145318/1‑94 (MQ=60)

                                                 CATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCAC                                              >  SRR4302533.5682181/1‑94 (MQ=60)

                                                  ATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACT                                             <  SRR4302533.610319/94‑1 (MQ=60)

                                                  ATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACT                                             >  SRR4302533.796003/1‑94 (MQ=60)

                                                    GAGCTGTAATATTATTTTCGCTGCCGGAGATTGCTTCGGGCGCCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTAT                                           <  SRR4302533.4155907/94‑1 (MQ=60)

                                                    CAGTTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTAT                                           <  SRR4302533.2095144/94‑1 (MQ=60)

                                                    CAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTAT                                           <  SRR4302533.4168121/94‑1 (MQ=60)

                                                    CAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTAT                                           <  SRR4302533.3844631/94‑1 (MQ=60)

                                                    CAGCTGTAATCTTAATTTCACTGCCGGAGATTGCACCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTAT                                           <  SRR4302533.6017792/94‑1 (MQ=60)

                                                     AGCTGTAATCTTAATTCCCCTGCCGGAAATTGCATCGGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATG                                          <  SRR4302533.2801179/94‑1 (MQ=60)

                                                      GCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGA                                         <  SRR4302533.5862842/94‑1 (MQ=60)

                                                        TGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAA                                       >  SRR4302533.1017452/1‑94 (MQ=60)

                                                        TGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAA                                       >  SRR4302533.4225949/1‑94 (MQ=60)

                                                        TGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAA                                       >  SRR4302533.4163130/1‑94 (MQ=60)

                                                        TGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAA                                       >  SRR4302533.2642442/1‑94 (MQ=60)

                                                        TGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAA                                       >  SRR4302533.316322/1‑94 (MQ=60)

                                                         GTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAAC                                      >  SRR4302533.3985548/1‑94 (MQ=60)

                                                         GTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAAC                                      >  SRR4302533.4481779/1‑94 (MQ=60)

                                                         GTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAAC                                      <  SRR4302533.5538187/94‑1 (MQ=60)

                                                         GTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGACACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAAC                                      >  SRR4302533.416798/1‑94 (MQ=60)

                                                          TAATCTTAATTTCACTGCGGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACA                                     <  SRR4302533.828869/94‑1 (MQ=60)

                                                           AATTTTAATTTCCCTGCGGGAGATGGCATCGGGGGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAG                                    <  SRR4302533.1607646/94‑1 (MQ=60)

                                                           AATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAG                                    >  SRR4302533.5723348/1‑94 (MQ=60)

                                                           AATCTTAATTTCACGGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAG                                    <  SRR4302533.1273369/94‑1 (MQ=60)

                                                            ATCTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGA                                   >  SRR4302533.3063059/1‑94 (MQ=60)

                                                             TCTTAATTTGTCTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAG                                  <  SRR4302533.2150824/94‑1 (MQ=60)

                                                              TTTAATTTCACTGCCGGAGATTGCATCGGGCGGCTTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGC                                 <  SRR4302533.943064/94‑1 (MQ=60)

                                                              CTTAATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGC                                 >  SRR4302533.3136047/1‑94 (MQ=60)

                                                               TTATTTTCACTGCGGGAGATGGCAGCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCC                                <  SRR4302533.535353/94‑1 (MQ=60)

                                                               TTAATTTCACGGCGGGAGATTGCATCCGGCGGCTTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCC                                <  SRR4302533.3390595/94‑1 (MQ=60)

                                                                 ATTTTCACTGCGGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAT                              <  SRR4302533.4649717/94‑1 (MQ=60)

                                                                 AATTTCCCTGCCGGAGATTGCATCCGGTGGCTTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAT                              <  SRR4302533.4156255/94‑1 (MQ=60)

                                                                 AATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAT                              >  SRR4302533.4002406/1‑94 (MQ=60)

                                                                 AATTTCACTGCCGAAGATTCCACCCGGCGGCCTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCAT                              <  SRR4302533.3086466/94‑1 (MQ=60)

                                                                  ATTTCACTGCGGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATT                             <  SRR4302533.2716927/94‑1 (MQ=60)

                                                                  ATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATT                             >  SRR4302533.1877624/1‑94 (MQ=60)

                                                                  ATTTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATT                             >  SRR4302533.4823659/1‑94 (MQ=60)

                                                                   TTTCACGGCGGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTT                            <  SRR4302533.2051949/94‑1 (MQ=60)

                                                                    TTCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTT                           >  SRR4302533.5956654/1‑94 (MQ=60)

                                                                     TCACTGCGGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTT                          <  SRR4302533.1515726/94‑1 (MQ=60)

                                                                     TCACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTT                          >  SRR4302533.1275702/1‑94 (MQ=60)

                                                                      CACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTT                         >  SRR4302533.2359771/1‑94 (MQ=60)

                                                                       ACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTT                        >  SRR4302533.1178362/1‑94 (MQ=60)

                                                                       ACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTT                        >  SRR4302533.2561516/1‑94 (MQ=60)

                                                                       ACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTT                        >  SRR4302533.6286030/1‑94 (MQ=60)

                                                                       ACTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTT                        >  SRR4302533.2211980/1‑94 (MQ=60)

                                                                        CTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTG                       >  SRR4302533.2685416/1‑94 (MQ=60)

                                                                        CTGCCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTG                       >  SRR4302533.2843705/1‑94 (MQ=60)

                                                                         TGGCGAAGATTGCATCGGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGC                      <  SRR4302533.3430307/94‑1 (MQ=60)

                                                                         TGCGGGAGATTGCATCGGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGC                      <  SRR4302533.4819702/94‑1 (MQ=60)

                                                                         TGCCGGAGATTGCATCCGGCGGCGTTACCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGC                      <  SRR4302533.6098897/94‑1 (MQ=60)

                                                                           CCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCC                    >  SRR4302533.3422564/1‑94 (MQ=60)

                                                                           CCGGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCC                    <  SRR4302533.5218110/94‑1 (MQ=60)

                                                                           CCGGAGATTGCACCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCC                    <  SRR4302533.1466483/94‑1 (MQ=60)

                                                                             GGAGATTGCATCCGGCGGCGTTATCCCGCCATAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCAT                  >  SRR4302533.3935040/1‑94 (MQ=60)

                                                                             GGAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCAT                  >  SRR4302533.3096902/1‑94 (MQ=60)

                                                                              GAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATC                 >  SRR4302533.1581744/1‑94 (MQ=60)

                                                                              GAGATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATC                 >  SRR4302533.5246789/1‑94 (MQ=60)

                                                                                 ATTGCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCT              <  SRR4302533.1868616/94‑1 (MQ=60)

                                                                                   TCCATCCGGCGGCTTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCC            <  SRR4302533.3203747/94‑1 (MQ=60)

                                                                                    GCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCC           >  SRR4302533.1966271/1‑94 (MQ=60)

                                                                                    GCATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCC           <  SRR4302533.1904814/94‑1 (MQ=60)

                                                                                     CATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCG          >  SRR4302533.1379807/1‑94 (MQ=60)

                                                                                     CATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCG          >  SRR4302533.4930918/1‑94 (MQ=60)

                                                                                     CATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCG          <  SRR4302533.1440791/94‑1 (MQ=60)

                                                                                     CATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCG          >  SRR4302533.4382416/1‑94 (MQ=60)

                                                                                     CAGCCGGCGGCTTTACCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCG          <  SRR4302533.1191513/94‑1 (MQ=60)

                                                                                      ATCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGC         >  SRR4302533.1997744/1‑94 (MQ=60)

                                                                                       TCCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGCC        >  SRR4302533.1188931/1‑94 (MQ=60)

                                                                                        CCGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGCCT       >  SRR4302533.143885/1‑94 (MQ=60)

                                                                                         CGGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGCCTG      >  SRR4302533.3813898/1‑94 (MQ=60)

                                                                                          GGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGCCTGA     >  SRR4302533.2169245/1‑94 (MQ=60)

                                                                                          GGCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGCCTGA     >  SRR4302533.175626/1‑94 (MQ=60)

                                                                                           GCGGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGCCTGAA    >  SRR4302533.4675646/1‑94 (MQ=60)

                                                                                             GGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGCCTGAAAC  <  SRR4302533.5807698/94‑1 (MQ=60)

TGATATCGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGAGCCATTTTTTTGCCCATCTCTCCCGCCTGAAAC  >  NC_000913/2406738‑2406924

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`