Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,487,208	(A)_6→5	coding (20/1185 nt)	yfdE ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,487,203	0	A	.	100.0%	1077.6 / NA	232	coding (25/1185 nt)	yfdE	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (108/124); total (108/124)

Only 100 of 256 total aligned reads displayed.

GAAAGGTCCATTAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTGAAAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAATCCA  >  NC_000913/2487111‑2487291

gAAAGGTCCATTAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTGa                                                                                          <  1:5291756/93‑1 (MQ=255)

gAAAGGTCCATTAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTGTCATTATTTGTCATTTGCTTATGCCTTGa                                                                                          >  2:6191457/1‑93 (MQ=255)

 aaaGGTCCATTAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTGaa                                                                                         >  1:1480590/1‑93 (MQ=255)

  aaGGTCCATTAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTGaaa                                                                                        >  2:589990/1‑93 (MQ=255)

  aaGGTCCATTAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTGaaa                                                                                        <  2:4026805/93‑1 (MQ=255)

  aaGGTCCAGTAAGGACATGAGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTGaaa                                                                                        >  2:6156753/1‑93 (MQ=255)

   aGGTCCATTAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTGaaaa                                                                                       >  1:4179290/1‑93 (MQ=255)

    ggTCCATTAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTGaaaaa                                                                                      <  2:5304771/93‑1 (MQ=255)

     gTCCATTAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTGaaaaag                                                                                     >  1:4851885/1‑92 (MQ=255)

     gTCCATTAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTGaaaaag                                                                                     >  2:1765775/1‑92 (MQ=255)

     gTCCATTAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTGaaaaag                                                                                     >  2:2832607/1‑92 (MQ=255)

       ccATTAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTGaaaaagcc                                                                                   >  2:92746/1‑90 (MQ=255)

         aTTAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGa                                                                                <  1:2141521/93‑1 (MQ=255)

         aTTAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGa                                                                                <  1:3320492/93‑1 (MQ=255)

          ttAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGaa                                                                               <  2:5140769/93‑1 (MQ=255)

            aaGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAgg                                                                             >  1:3530566/1‑93 (MQ=255)

             aGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGt                                                                            <  1:3443653/93‑1 (MQ=255)

               gACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGa                                                                          >  2:4367501/1‑93 (MQ=255)

               gACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGa                                                                          <  1:5809706/93‑1 (MQ=255)

               gACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGa                                                                          <  1:4659305/93‑1 (MQ=255)

                  aTGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGaaaa                                                                       <  2:5578154/93‑1 (MQ=255)

                  aTGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGaaaa                                                                       <  1:3793875/93‑1 (MQ=255)

                      gtCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGaca                                                                   >  2:242707/1‑93 (MQ=255)

                      gtCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGaca                                                                   <  1:6305272/93‑1 (MQ=255)

                       tCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGacac                                                                  <  1:2541085/93‑1 (MQ=255)

                       tCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGacac                                                                  >  2:5458533/1‑93 (MQ=255)

                       tCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGacac                                                                  <  2:605879/93‑1 (MQ=255)

                         atatCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACtt                                                                <  1:6052478/93‑1 (MQ=255)

                         atatCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACtt                                                                >  1:3147365/1‑93 (MQ=255)

                          tatCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTc                                                               >  1:2357353/1‑93 (MQ=255)

                           atCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCg                                                              <  2:3028518/93‑1 (MQ=255)

                           atCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCg                                                              <  1:435773/93‑1 (MQ=255)

                            tCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCgg                                                             <  1:4885307/93‑1 (MQ=255)

                              gATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCa                                                           >  2:213243/1‑93 (MQ=255)

                              gATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCa                                                           >  2:2520839/1‑93 (MQ=255)

                               aTAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCAt                                                          <  1:3941892/93‑1 (MQ=255)

                                tAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCAtt                                                         <  1:425353/93‑1 (MQ=255)

                                 aaCTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGGAttt                                                        >  2:2873998/1‑93 (MQ=255)

                                 aaCTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCAttt                                                        <  1:4097971/93‑1 (MQ=255)

                                 aaCTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCAttt                                                        <  2:134665/93‑1 (MQ=255)

                                  aCTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTa                                                       <  2:2594540/93‑1 (MQ=255)

                                  aCTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTa                                                       <  1:3840533/93‑1 (MQ=255)

                                  aCTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCAAAGGTGAAAAGACACTTCGGCATTTa                                                       <  2:6302201/93‑1 (MQ=255)

                                    taataaGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATg                                                     <  1:5909255/93‑1 (MQ=255)

                                     aataaGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGt                                                    <  1:3292406/93‑1 (MQ=255)

                                     aataaGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGt                                                    >  1:764956/1‑93 (MQ=255)

                                      ataaGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTa                                                   >  1:2250/1‑93 (MQ=255)

                                      ataaGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTa                                                   >  2:4273076/1‑93 (MQ=255)

                                        aaGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTaaa                                                 >  1:1048726/1‑93 (MQ=255)

                                         aGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTaaaa                                                <  2:1118196/93‑1 (MQ=255)

                                           ccTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATc                                              >  2:3814016/1‑93 (MQ=255)

                                           ccTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATc                                              <  2:3742304/93‑1 (MQ=255)

                                              tCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAAt                                           <  1:6223072/93‑1 (MQ=255)

                                              tCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAAt                                           >  1:1788648/1‑93 (MQ=255)

                                               cAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATa                                          >  1:335666/1‑93 (MQ=255)

                                                aaaCGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATaa                                         >  2:1923862/1‑93 (MQ=255)

                                                 aaCGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATaaa                                        >  2:760747/1‑92 (MQ=255)

                                                 aaCGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAAc                                        >  1:3056278/1‑93 (MQ=255)

                                                  aCGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACa                                       >  2:1470391/1‑93 (MQ=255)

                                                   cGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACAt                                      <  2:1254933/93‑1 (MQ=255)

                                                   cGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACAt                                      <  1:4364847/93‑1 (MQ=255)

                                                    ggCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATg                                     <  1:820390/93‑1 (MQ=255)

                                                    ggCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATg                                     <  1:892559/93‑1 (MQ=255)

                                                      cccTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGat                                   <  1:5861156/93‑1 (MQ=255)

                                                       cccttGCATTCATTAATTTTCATTTGGTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACTCTTCGGCATTTATGTAAAATCAATAACATGatt                                  <  1:2860149/90‑1 (MQ=255)

                                                       ccTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGatt                                  >  1:2766393/1‑93 (MQ=255)

                                                       ccTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGatt                                  <  1:2650949/93‑1 (MQ=255)

                                                        cTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGatta                                 <  1:476547/93‑1 (MQ=255)

                                                        cTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGatta                                 >  1:1945698/1‑93 (MQ=255)

                                                        cTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGatta                                 <  1:5746994/93‑1 (MQ=255)

                                                         tttGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGattaa                                >  1:308700/1‑93 (MQ=255)

                                                            gCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGattaatta                             <  1:1432995/93‑1 (MQ=255)

                                                            gCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGattaatta                             >  2:3929237/1‑93 (MQ=255)

                                                             cTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTAt                            >  2:468303/1‑93 (MQ=255)

                                                                 cATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGaaa                        <  2:1265136/93‑1 (MQ=255)

                                                                    tattTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCa                     <  2:5424501/93‑1 (MQ=255)

                                                                    tattTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCa                     <  2:4892052/93‑1 (MQ=255)

                                                                    tattTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCa                     <  1:6106564/93‑1 (MQ=255)

                                                                     attTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAg                    <  1:1569889/93‑1 (MQ=255)

                                                                      tttGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGt                   <  1:514777/93‑1 (MQ=255)

                                                                       ttGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTc                  <  1:1688268/93‑1 (MQ=255)

                                                                         gTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGa                >  2:1835073/1‑93 (MQ=255)

                                                                          tCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGAc               >  1:1142800/1‑93 (MQ=255)

                                                                            aTTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTg             >  1:4009292/1‑93 (MQ=255)

                                                                             tttGCTTTTGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACtaa            <  1:5056894/93‑3 (MQ=255)

                                                                              ttGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGAc           >  2:3621754/1‑93 (MQ=255)

                                                                              ttGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGAc           <  1:4994464/93‑1 (MQ=255)

                                                                               tGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACa          <  1:2688488/93‑1 (MQ=255)

                                                                               tGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACa          <  2:2659419/93‑1 (MQ=255)

                                                                                gCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACAt         >  1:3503909/1‑93 (MQ=255)

                                                                                gCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACAt         >  1:3634828/1‑93 (MQ=255)

                                                                                 cTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATa        >  2:1065210/1‑93 (MQ=255)

                                                                                  ttATGCCTTG‑AAAAAGCCGAAGGGGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATaa       >  1:2518053/1‑93 (MQ=255)

                                                                                   tATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATaaa      <  1:551686/93‑1 (MQ=255)

                                                                                    aTGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAAt     >  2:2286683/1‑93 (MQ=255)

                                                                                    aTGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAAt     <  1:5988353/93‑1 (MQ=255)

                                                                                     tGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAATc    <  2:4135554/93‑1 (MQ=255)

                                                                                      gCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAATcc   <  2:3416974/93‑1 (MQ=255)

                                                                                       ccTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAATCca  <  2:5697102/93‑1 (MQ=255)

                                                                                       ccTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAATCca  <  2:60147/93‑1 (MQ=255)

GAAAGGTCCATTAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTGAAAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAATCCA  >  NC_000913/2487111‑2487291

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGTCCATTAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTGAAAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCC  >  NC_000913/2487115‑2487301

GGTCCATTAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCGTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTGAAAAAG                                                                                               >  SRR4302533.4227210/1‑94 (MQ=60)

GGTCCATTAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTGAAAAAG                                                                                               >  SRR4302533.4881287/1‑94 (MQ=60)

   CCATTAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCG                                                                                           <  SRR4302533.2695333/94‑1 (MQ=60)

   CCATTAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCG                                                                                           <  SRR4302533.1460116/94‑1 (MQ=60)

    CATTAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGA                                                                                          >  SRR4302533.383822/1‑94 (MQ=60)

     ATTAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAA                                                                                         <  SRR4302533.2154719/94‑1 (MQ=60)

     ATTAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAA                                                                                         >  SRR4302533.5025820/1‑94 (MQ=60)

     ATTAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAA                                                                                         <  SRR4302533.3341003/94‑1 (MQ=60)

       TAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGG                                                                                       >  SRR4302533.1748129/1‑94 (MQ=60)

       TAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGG                                                                                       <  SRR4302533.2558819/94‑1 (MQ=60)

       TAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGG                                                                                       >  SRR4302533.3552326/1‑94 (MQ=60)

       TAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGG                                                                                       >  SRR4302533.5590872/1‑94 (MQ=60)

       TAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGG                                                                                       <  SRR4302533.781633/94‑1 (MQ=60)

       TAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGG                                                                                       <  SRR4302533.992063/94‑1 (MQ=60)

        AAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGT                                                                                      <  SRR4302533.3745557/94‑1 (MQ=60)

        AAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGT                                                                                      <  SRR4302533.4686444/94‑1 (MQ=60)

        AAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGT                                                                                      <  SRR4302533.1100190/94‑1 (MQ=60)

         AGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTG                                                                                     <  SRR4302533.3464922/94‑1 (MQ=60)

          GGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGA                                                                                    >  SRR4302533.5151981/1‑94 (MQ=60)

           GACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAA                                                                                   <  SRR4302533.872372/94‑1 (MQ=60)

           GACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAA                                                                                   <  SRR4302533.4687541/94‑1 (MQ=60)

           GACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAA                                                                                   <  SRR4302533.3486103/94‑1 (MQ=60)

           GACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAA                                                                                   >  SRR4302533.6172141/1‑94 (MQ=60)

           GACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAA                                                                                   <  SRR4302533.5844790/94‑1 (MQ=60)

             CATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAA                                                                                 >  SRR4302533.4125039/1‑94 (MQ=60)

              ATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAG                                                                                <  SRR4302533.3817094/94‑1 (MQ=60)

              ATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAG                                                                                <  SRR4302533.2739966/94‑1 (MQ=60)

                GTGTCATATCGATAACTAATAAGCCTTCAAACGTCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGAC                                                                              <  SRR4302533.5711267/94‑1 (MQ=60)

                GTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGAC                                                                              <  SRR4302533.2225234/94‑1 (MQ=60)

                GTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGAC                                                                              <  SRR4302533.3362578/94‑1 (MQ=60)

                 TGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACA                                                                             <  SRR4302533.3385110/94‑1 (MQ=60)

                 TGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACA                                                                             >  SRR4302533.6065341/1‑94 (MQ=60)

                  GTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACAC                                                                            >  SRR4302533.3244805/1‑94 (MQ=60)

                  GTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACAC                                                                            <  SRR4302533.3510823/94‑1 (MQ=60)

                  GTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACAC                                                                            <  SRR4302533.6343002/94‑1 (MQ=60)

                   TCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACT                                                                           <  SRR4302533.2556728/94‑1 (MQ=60)

                   TCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACT                                                                           >  SRR4302533.300449/1‑94 (MQ=60)

                    CATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTT                                                                          >  SRR4302533.307799/1‑94 (MQ=60)

                    CATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTT                                                                          <  SRR4302533.2721938/94‑1 (MQ=60)

                    CATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTT                                                                          <  SRR4302533.6026489/94‑1 (MQ=60)

                    CATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTT                                                                          >  SRR4302533.3166717/1‑94 (MQ=60)

                    CATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTT                                                                          <  SRR4302533.4855109/94‑1 (MQ=60)

                     ATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AACAAGCCGAAGGTGAAAAGACACTTC                                                                         >  SRR4302533.1248712/1‑94 (MQ=60)

                     ATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTC                                                                         <  SRR4302533.6089137/94‑1 (MQ=60)

                     ATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTC                                                                         >  SRR4302533.4305039/1‑94 (MQ=60)

                     ATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTC                                                                         >  SRR4302533.2371924/1‑94 (MQ=60)

                      TATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCG                                                                        <  SRR4302533.2245675/94‑1 (MQ=60)

                      TATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCG                                                                        <  SRR4302533.58088/94‑1 (MQ=60)

                       ATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGG                                                                       <  SRR4302533.438368/94‑1 (MQ=60)

                       ATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGG                                                                       >  SRR4302533.2652750/1‑94 (MQ=60)

                        TCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGC                                                                      <  SRR4302533.4914903/94‑1 (MQ=60)

                         CGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCA                                                                     >  SRR4302533.5005837/1‑94 (MQ=60)

                         CGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCA                                                                     >  SRR4302533.3078832/1‑94 (MQ=60)

                           ATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑GAAAAGCCGAAGGTGAAAAGACACTTCGGCATT                                                                   <  SRR4302533.3549662/94‑1 (MQ=60)

                           ATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATT                                                                   <  SRR4302533.3598220/94‑1 (MQ=60)

                           ATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATT                                                                   <  SRR4302533.3965944/94‑1 (MQ=60)

                            TAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTT                                                                  <  SRR4302533.427891/94‑1 (MQ=60)

                             AACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTA                                                                 <  SRR4302533.4122916/94‑1 (MQ=60)

                              ACTAATAAGCCTTCAAACGGCTCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTAT                                                                <  SRR4302533.2318118/94‑1 (MQ=60)

                              ACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTAT                                                                <  SRR4302533.3863995/94‑1 (MQ=60)

                              ACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTAT                                                                <  SRR4302533.63984/94‑1 (MQ=60)

                               CTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATG                                                               >  SRR4302533.1645055/1‑94 (MQ=60)

                               CTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATG                                                               >  SRR4302533.149294/1‑94 (MQ=60)

                                TAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGT                                                              <  SRR4302533.5944953/94‑1 (MQ=60)

                                TAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGT                                                              >  SRR4302533.5869837/1‑94 (MQ=60)

                                TAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGT                                                              <  SRR4302533.658122/94‑1 (MQ=60)

                                TAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGT                                                              >  SRR4302533.769461/1‑94 (MQ=60)

                                 AATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTA                                                             <  SRR4302533.3312728/94‑1 (MQ=60)

                                 AATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTA                                                             >  SRR4302533.2267/1‑94 (MQ=60)

                                 AATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTA                                                             >  SRR4302533.4836869/1‑94 (MQ=60)

                                  ATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAA                                                            >  SRR4302533.2021120/1‑94 (MQ=60)

                                   TAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAA                                                           >  SRR4302533.1054892/1‑94 (MQ=60)

                                   TAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAA                                                           <  SRR4302533.4766431/94‑1 (MQ=60)

                                       CCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCA                                                       <  SRR4302533.5300197/94‑1 (MQ=60)

                                       CCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCA                                                       >  SRR4302533.5870441/1‑94 (MQ=60)

                                        CTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAA                                                      >  SRR4302533.4385272/1‑94 (MQ=60)

                                         TTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAAT                                                     >  SRR4302533.1799525/1‑94 (MQ=60)

                                          TCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATA                                                    <  SRR4302533.6260367/94‑1 (MQ=60)

                                          TCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATA                                                    >  SRR4302533.337718/1‑94 (MQ=60)

                                          TCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATA                                                    >  SRR4302533.3373621/1‑94 (MQ=60)

                                           CAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAGTCAATAA                                                   >  SRR4302533.1506061/1‑94 (MQ=60)

                                           CAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAA                                                   >  SRR4302533.403720/1‑94 (MQ=60)

                                            AAACGTCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAAC                                                  <  SRR4302533.3189162/94‑1 (MQ=60)

                                            AAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAAC                                                  <  SRR4302533.2399296/94‑1 (MQ=60)

                                            AAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAAC                                                  >  SRR4302533.3075022/1‑94 (MQ=60)

                                             AACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACA                                                 >  SRR4302533.5006385/1‑94 (MQ=60)

                                              ACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGTCACTTCGGCATTTATGTAAAATCAATAACAT                                                <  SRR4302533.3339959/94‑1 (MQ=60)

                                              ACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACAT                                                <  SRR4302533.3753210/94‑1 (MQ=60)

                                              ACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACAT                                                <  SRR4302533.6306504/94‑1 (MQ=60)

                                               CGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATG                                               <  SRR4302533.4391198/94‑1 (MQ=60)

                                               CGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATG                                               <  SRR4302533.3121947/94‑1 (MQ=60)

                                                GGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGA                                              <  SRR4302533.825199/94‑1 (MQ=60)

                                                GGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGA                                              <  SRR4302533.897805/94‑1 (MQ=60)

                                                 GCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGAT                                             >  SRR4302533.4907969/1‑94 (MQ=60)

                                                  CCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATT                                            <  SRR4302533.5896595/94‑1 (MQ=60)

                                                  CCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATT                                            >  SRR4302533.2783352/1‑94 (MQ=60)

                                                  CCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGACGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATT                                            >  SRR4302533.3960455/1‑94 (MQ=60)

                                                   CCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTA                                           >  SRR4302533.1957562/1‑94 (MQ=60)

                                                   CCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTA                                           <  SRR4302533.2667232/94‑1 (MQ=60)

                                                   CCCTTGCATTCATTAATTTTCATTTGGTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACTCTTCGGCATTTATGTAAAATCAATAACATGATTA                                           <  SRR4302533.2877745/94‑1 (MQ=60)

                                                    CTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAA                                          <  SRR4302533.479391/94‑1 (MQ=60)

                                                    CTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAA                                          >  SRR4302533.310589/1‑94 (MQ=60)

                                                    CTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAA                                          <  SRR4302533.5781669/94‑1 (MQ=60)

                                                     TTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAAT                                         >  SRR4302533.4209371/1‑94 (MQ=60)

                                                     TTTGCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAAT                                         <  SRR4302533.4672681/94‑1 (MQ=60)

                                                        GCTTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTAT                                      <  SRR4302533.1441652/94‑1 (MQ=60)

                                                          TTTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGA                                    >  SRR4302533.3538528/1‑94 (MQ=60)

                                                           TTCATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAA                                   >  SRR4302533.4306813/1‑94 (MQ=60)

                                                             CATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAAC                                 >  SRR4302533.3003590/1‑94 (MQ=60)

                                                             CATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAAC                                 <  SRR4302533.6118435/94‑1 (MQ=60)

                                                              ATTATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACC                                <  SRR4302533.1964915/94‑1 (MQ=60)

                                                                TATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAG                              <  SRR4302533.1711413/94‑1 (MQ=60)

                                                                TATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAG                              <  SRR4302533.6143435/94‑1 (MQ=60)

                                                                TATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAG                              >  SRR4302533.1417355/1‑94 (MQ=60)

                                                                 ATTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGT                             <  SRR4302533.1579346/94‑1 (MQ=60)

                                                                  TTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTC                            <  SRR4302533.517834/94‑1 (MQ=60)

                                                                  TTTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGGC                            <  SRR4302533.5980223/94‑1 (MQ=60)

                                                                  TGTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTC                            <  SRR4302533.5491418/94‑1 (MQ=60)

                                                                   TTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCG                           <  SRR4302533.1698500/94‑1 (MQ=60)

                                                                   TTGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCG                           >  SRR4302533.4010662/1‑94 (MQ=60)

                                                                    TGTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGA                          >  SRR4302533.5120224/1‑94 (MQ=60)

                                                                     GTCATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGAC                         >  SRR4302533.1149613/1‑94 (MQ=60)

                                                                       CATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTG                       >  SRR4302533.4033703/1‑94 (MQ=60)

                                                                       CATTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTG                       >  SRR4302533.1822766/1‑94 (MQ=60)

                                                                         TTTGCTTTTGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTAAC                     <  SRR4302533.5087458/94‑1 (MQ=60)

                                                                         TTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGAC                     <  SRR4302533.52144/94‑1 (MQ=60)

                                                                         TTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGAC                     <  SRR4302533.876160/94‑1 (MQ=60)

                                                                         TTTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGAC                     <  SRR4302533.5946216/94‑1 (MQ=60)

                                                                          TTGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACA                    <  SRR4302533.5024743/94‑1 (MQ=60)

                                                                           TGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACAT                   >  SRR4302533.3657182/1‑94 (MQ=60)

                                                                           TGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACAT                   <  SRR4302533.2704969/94‑1 (MQ=60)

                                                                           TGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACAT                   >  SRR4302533.3525508/1‑94 (MQ=60)

                                                                           TGCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACAT                   >  SRR4302533.5902035/1‑94 (MQ=60)

                                                                            GCTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATA                  >  SRR4302533.2542520/1‑94 (MQ=60)

                                                                             CTTATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAA                 >  SRR4302533.2399039/1‑94 (MQ=60)

                                                                             CTTATGCCTTG‑AAAAAGCCGAAGGGGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAA                 >  SRR4302533.2533568/1‑94 (MQ=60)

                                                                               TATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAAT               <  SRR4302533.554956/94‑1 (MQ=60)

                                                                                ATGCCTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAATC              <  SRR4302533.6024619/94‑1 (MQ=60)

                                                                                    CTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAATCCACA          >  SRR4302533.2954006/1‑94 (MQ=60)

                                                                                    CTTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAATCCACA          <  SRR4302533.1331450/94‑1 (MQ=60)

                                                                                     TTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAATCCACAA         <  SRR4302533.6064277/94‑1 (MQ=60)

                                                                                     TTG‑AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAATCCACAA         <  SRR4302533.3203541/94‑1 (MQ=60)

                                                                                       tgAAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAATCCACAAG        <  SRR4302533.6340092/92‑1 (MQ=60)

                                                                                       tgAAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAATCCACAAG        <  SRR4302533.1924379/92‑1 (MQ=60)

                                                                                        GAAAAAGCCGAAGGTGAAAACACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGG       <  SRR4302533.4664752/94‑1 (MQ=60)

                                                                                         AAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGGG      >  SRR4302533.2948432/1‑94 (MQ=60)

                                                                                          AAAAGCTGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGGGA     <  SRR4302533.3669611/94‑1 (MQ=60)

                                                                                          AAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGGGA     <  SRR4302533.1590228/94‑1 (MQ=60)

                                                                                          AAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGGGA     <  SRR4302533.3071924/94‑1 (MQ=60)

                                                                                          AAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGGGA     >  SRR4302533.4947601/1‑94 (MQ=60)

                                                                                          AAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGGGA     <  SRR4302533.1280778/94‑1 (MQ=60)

                                                                                          AAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGGGA     >  SRR4302533.16777/1‑94 (MQ=60)

                                                                                           AAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGGGAG    <  SRR4302533.4274980/94‑1 (MQ=60)

                                                                                            AAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGGGAGC   <  SRR4302533.5283035/94‑1 (MQ=60)

                                                                                             AGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCC  >  SRR4302533.242017/1‑94 (MQ=60)

GGTCCATTAAGGACATGTGTCATATCGATAACTAATAAGCCTTCAAACGGCCCTTTGCTTTCATTATTTGTCATTTGCTTATGCCTTGAAAAAAGCCGAAGGTGAAAAGACACTTCGGCATTTATGTAAAATCAATAACATGATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCC  >  NC_000913/2487115‑2487301

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`