Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,579,447 |
T→C |
S598P (TCG→CCG) |
tktB → |
transketolase 2 isozyme |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,579,447 | 0 | T | C | 99.5%
| 596.9
/ NA
| 190 | S598P (TCG→CCG) | tktB | transketolase 2 isozyme |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (91/98); minor base A (1/0); total (92/98) |
| Fisher's exact test for biased strand distribution p-value = 4.84e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 195 total aligned reads displayed.
GAGAAATTAGCAGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGTCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGAAAGGGGC > NC_000913/2579357‑2579535
|
gagaAATTAGCAGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCg < 1:121682/93‑1 (MQ=255)
gaAATTAGCAGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGgt < 2:3919188/93‑1 (MQ=255)
gaAATGAGCAGGAGAAGGTCGCAATGTACGCTTAGTTTCCCTGCCCTCGACCGATATTTTCGCCGCCCAGGATGAGGAATATCGGGAGCCGgt < 2:3182913/93‑1 (MQ=255)
gaAATGAGCAGGAGAAGGTCGAAATGTACGCGTAGTTTCCCTGCCCGCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGgt < 2:4535115/93‑1 (MQ=255)
aaaTTAGCAGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGgtg < 1:5511442/93‑1 (MQ=255)
aaTTAGCAGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGgtgt > 1:3550371/1‑93 (MQ=255)
aaTTAGCAGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGgggt > 1:1828451/1‑93 (MQ=255)
ttAGCAGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTg < 1:5322626/93‑1 (MQ=255)
aGCAGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGcc > 1:6189712/1‑93 (MQ=255)
aGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTc < 1:5862962/93‑1 (MQ=255)
ggAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCt > 2:2944096/1‑93 (MQ=255)
ggAGAAGGTCGCAATGTACGCGTAGTTCCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCt > 2:5812837/1‑93 (MQ=255)
gaAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAAc < 2:4834033/93‑1 (MQ=255)
aaGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACg < 1:1028829/93‑1 (MQ=255)
aGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGt > 2:1425625/1‑93 (MQ=255)
ggTCGGAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGtt < 1:4675992/93‑1 (MQ=255)
ggTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGtt > 1:22779/1‑93 (MQ=255)
gTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTg < 2:3868273/93‑1 (MQ=255)
cGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCg > 1:974620/1‑93 (MQ=255)
gCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCgg > 1:251965/1‑93 (MQ=255)
gCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCgg < 2:5063386/93‑1 (MQ=255)
cAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGc > 2:4153323/1‑93 (MQ=255)
cAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGc > 2:3544267/1‑93 (MQ=255)
aaTGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCt < 1:6248700/93‑1 (MQ=255)
aaTGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCt < 2:2838188/93‑1 (MQ=255)
aTGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTc < 2:5187141/93‑1 (MQ=255)
tACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTcgcg < 1:4115909/93‑1 (MQ=255)
tACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTcgcg > 1:3702149/1‑93 (MQ=255)
tACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTcgcg < 1:1386410/93‑1 (MQ=255)
cgcgTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTg > 1:5341341/1‑93 (MQ=255)
cgcgTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTg < 2:2181411/93‑1 (MQ=255)
gcgTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTgg > 1:5190532/1‑93 (MQ=255)
cgTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGc < 2:4738071/93‑1 (MQ=255)
cgTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGc < 1:394255/93‑1 (MQ=255)
tttCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTgg > 2:586533/1‑93 (MQ=255)
tccccTGCCCTCGACCGATATTTTCTACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGa < 2:4269616/91‑1 (MQ=255)
tCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGaa < 1:2655854/93‑1 (MQ=255)
tCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGaa < 2:5492644/93‑1 (MQ=255)
cccTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAg < 1:4611796/93‑1 (MQ=255)
ccTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGGGGGAgg > 2:1872371/1‑92 (MQ=255)
ccTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGGGGGAGc > 2:208148/1‑93 (MQ=255)
tGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGGGGCGGGGGGAGCAg > 2:2551907/1‑93 (MQ=255)
gCCCTCGACCGATATTTTCGACGGCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAgg < 2:4689862/93‑1 (MQ=255)
cTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCCCGTGGCGGGGGGAGAAgggtt > 1:1617662/1‑90 (MQ=255)
tCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTAtt < 2:5398759/93‑1 (MQ=255)
tCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTAtt < 1:1117751/93‑1 (MQ=255)
cGACTGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTg < 1:4507465/93‑1 (MQ=255)
gACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGc < 1:5963482/93‑1 (MQ=255)
aCCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGcc < 1:2144224/93‑1 (MQ=255)
aCCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGGGGCGGTGGGAGCAGGGATTGcc > 2:3347501/1‑93 (MQ=255)
aCCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGACTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAACAGGTATTGcg > 1:4254773/1‑92 (MQ=255)
ccGATTTTTTCTACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCg < 2:4474243/93‑1 (MQ=255)
ccGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCg < 1:3935379/93‑1 (MQ=255)
ccGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGGGGGAGCAGGGATTGCCg > 2:129860/1‑93 (MQ=255)
ccGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCCCTCGGTGGTCGACGGGGGGATTGCCg > 2:5587859/1‑93 (MQ=255)
cGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGa < 2:144605/93‑1 (MQ=255)
cGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGGATTGCCGa > 1:4638003/1‑93 (MQ=255)
cGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGGGGGAGCAGGGATTGCCGa > 2:3761214/1‑93 (MQ=255)
cGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGGGGAAGCAGGTATTGCCGa > 2:752535/1‑93 (MQ=255)
atatTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGAtt < 1:3082347/93‑1 (MQ=255)
tatTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTa < 2:3039460/93‑1 (MQ=255)
tatTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTa < 1:1472778/93‑1 (MQ=255)
atTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGGGGGGGGGGGAGGAGGGGTTGCCGGtttt > 2:4502405/1‑91 (MQ=255)
tttCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTg > 2:2747294/1‑93 (MQ=255)
ttCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTgg < 2:4804074/93‑1 (MQ=255)
tCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGt < 1:5142668/93‑1 (MQ=255)
tCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGt < 2:2288254/93‑1 (MQ=255)
gACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTAc < 2:4973119/93‑1 (MQ=255)
gCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCCTGGCGGTGGAAGCAGGTGTTGCCGCTTACTGGTACAAg > 1:4817379/1‑93 (MQ=255)
cAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGGAGCAGGTATTGCCGATTACTGGTACAAGTAt > 2:17017/1‑93 (MQ=255)
cAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGGAGCAGGGATTGCCGATTACTGGTACAAGTAt > 1:4999268/1‑93 (MQ=255)
aGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGGAGCAGGGATTGCCGATTACTGGGACAAATATg > 2:2659400/1‑93 (MQ=255)
aGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATg > 1:5889701/1‑93 (MQ=255)
ggATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGt < 2:1637798/93‑1 (MQ=255)
ggATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGGATTGCCGATTACTGGTACAAGTATGt > 1:3037503/1‑93 (MQ=255)
ggATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGGATTGCCGATTACTGGTACAAGTATGt > 1:5691698/1‑93 (MQ=255)
gATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGtt < 2:2818710/93‑1 (MQ=255)
gATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGCGGCGGTGGGAGCAGGGATTGCCGCTTACTGGGCCCAGTATGtt > 2:2497370/1‑93 (MQ=255)
aTGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTg < 2:5356651/93‑1 (MQ=255)
aTGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGGGGAAGCAAGTATTGCCGATTACTGGGACAAGTATGGTg > 2:6286539/1‑93 (MQ=255)
tGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGGAGCAGGTATTGCCGATTACTGGGACAAGTATGTTgg > 2:361841/1‑93 (MQ=255)
gAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGCATTGCCGGTTACTGGTACCAGGATGTTTGt > 2:4635415/1‑93 (MQ=255)
aGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTc < 1:4159880/93‑1 (MQ=255)
ggAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCt < 1:5163025/93‑1 (MQ=255)
ggAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCt < 1:473285/93‑1 (MQ=255)
gAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGGAGCAGGGATTGCCGATTACTGGGACACGTATGTTGGTCTg > 2:527375/1‑93 (MQ=255)
gAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTg < 1:3851325/93‑1 (MQ=255)
aaTATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGGATTGCCGATTACTGGTACAAGTATGTTGGTCTGa > 1:2311815/1‑93 (MQ=255)
atatCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGGAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGaa > 2:1931679/1‑93 (MQ=255)
atatCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGaa < 1:5443535/93‑1 (MQ=255)
tatCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGaaa < 2:243749/93‑1 (MQ=255)
tatCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGaaa < 2:4252942/93‑1 (MQ=255)
tatCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGaaa > 2:3475278/1‑93 (MQ=255)
atCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGAAAg < 1:1031944/93‑1 (MQ=255)
atCGGGAGCCGGTGTGGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGAAAg < 1:1066555/93‑1 (MQ=255)
tCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGAAAgg < 1:6057548/93‑1 (MQ=255)
tCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGGGGGAGCAGGTATTGCCGATTACTTGTACAAGTATGTTGGTCTGAAAgg > 2:3277211/1‑93 (MQ=38)
ggAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGGAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGAAAGGGGc > 2:3539704/1‑93 (MQ=255)
ggAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGAAAGGGGc > 1:6094806/1‑93 (MQ=255)
ggAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGACGGTGGAAGCATGTATTGCCGATTACTGGTACAAGTATGTAGGTCTGAAAGGGGc < 1:3195938/93‑1 (MQ=38)
|
GAGAAATTAGCAGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGTCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGAAAGGGGC > NC_000913/2579357‑2579535
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAGAGAAATTAGCAGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGTCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGAAAGGGGCAATTG > NC_000913/2579355‑2579540
|
CAGAGAAATTAGCAGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCC > SRR4302533.2013868/1‑94 (MQ=60)
CAGAGAAATTAGCAGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCC > SRR4302533.2909089/1‑94 (MQ=60)
AGAGAAATTAGCAGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGACG > SRR4302533.5757185/1‑94 (MQ=60)
GAGAAATTAGCAGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGG < SRR4302533.122449/94‑1 (MQ=60)
GAAATTAGCATGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTG < SRR4302533.4261599/94‑1 (MQ=60)
AAATTAGCAGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGT > SRR4302533.3572245/1‑94 (MQ=60)
AAATTAGCAGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGT < SRR4302533.5544716/94‑1 (MQ=60)
AAATTAGCAGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGGGT > SRR4302533.1839617/1‑94 (MQ=60)
AATTAGCAGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTT > SRR4302533.4171528/1‑94 (MQ=60)
ATTAGCAGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTG < SRR4302533.924678/94‑1 (MQ=60)
TTAGCAGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGC < SRR4302533.5354524/94‑1 (MQ=60)
TAGCAGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCC > SRR4302533.6226856/1‑94 (MQ=60)
CAGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTC > SRR4302533.6090413/1‑94 (MQ=60)
CAGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTC > SRR4302533.2573381/1‑94 (MQ=60)
CAGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTC < SRR4302533.3940221/94‑1 (MQ=60)
AGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCT > SRR4302533.1532447/1‑94 (MQ=60)
AGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCT < SRR4302533.5898408/94‑1 (MQ=60)
AAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGT < SRR4302533.1034871/94‑1 (MQ=60)
AAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGT > SRR4302533.2314782/1‑94 (MQ=60)
AGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTT > SRR4302533.22931/1‑94 (MQ=60)
GGTCGGAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTG < SRR4302533.4704330/94‑1 (MQ=60)
GGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTG > SRR4302533.5355012/1‑94 (MQ=60)
GGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTG < SRR4302533.3113827/94‑1 (MQ=60)
GGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTG > SRR4302533.3271531/1‑94 (MQ=60)
GGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTG > SRR4302533.140664/1‑94 (MQ=60)
tcgcaagtgcggcttgtttcCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCG < SRR4302533.1137854/74‑1 (MQ=60)
TCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCG > SRR4302533.980341/1‑94 (MQ=60)
TCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGAGGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCG < SRR4302533.4687485/94‑1 (MQ=60)
CGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGG > SRR4302533.253516/1‑94 (MQ=60)
CGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGG > SRR4302533.2775537/1‑94 (MQ=60)
CGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGG > SRR4302533.116770/1‑94 (MQ=60)
AATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTC < SRR4302533.6286088/94‑1 (MQ=60)
ATGTCCGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCG < SRR4302533.1273108/94‑1 (MQ=60)
ATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCG < SRR4302533.1818153/94‑1 (MQ=60)
GTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCG > SRR4302533.3724880/1‑94 (MQ=60)
TACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGT < SRR4302533.1394752/94‑1 (MQ=60)
TACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGT < SRR4302533.4140915/94‑1 (MQ=60)
ACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTG > SRR4302533.5373374/1‑94 (MQ=60)
CGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGG > SRR4302533.5178750/1‑94 (MQ=60)
CGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGG > SRR4302533.5221849/1‑94 (MQ=60)
GCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGC > SRR4302533.6272412/1‑94 (MQ=60)
CGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCG < SRR4302533.396646/94‑1 (MQ=60)
CGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCCGGTGGCG > SRR4302533.4708630/1‑94 (MQ=60)
TTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAA < SRR4302533.5494871/94‑1 (MQ=60)
TCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAG < SRR4302533.2672167/94‑1 (MQ=60)
TCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGGGGAAG > SRR4302533.3602592/1‑94 (MQ=60)
CCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGC < SRR4302533.4639738/94‑1 (MQ=60)
CCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGC > SRR4302533.4060398/1‑94 (MQ=60)
CTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAG < SRR4302533.4659635/94‑1 (MQ=60)
CTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGGGGCGGTGGGAGCAG > SRR4302533.2163455/1‑94 (MQ=60)
CCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCCCGTGGCGGggggagaagggtt > SRR4302533.1627463/1‑81 (MQ=60)
CTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGGGGAAGGAGGGATT > SRR4302533.5211487/1‑94 (MQ=60)
TCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTG < SRR4302533.1124383/94‑1 (MQ=60)
CGACTGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGC < SRR4302533.4534765/94‑1 (MQ=60)
GACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTtgcgggggggggggagcacgtagtcgc > SRR4302533.2476401/1‑67 (MQ=60)
GACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCC < SRR4302533.5999560/94‑1 (MQ=60)
GACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCC < SRR4302533.6130293/94‑1 (MQ=60)
GACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGGGGCGGGGGAAGCAGGTATTGCC > SRR4302533.4776681/1‑94 (MQ=60)
GACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGACTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAACAGGTATTGCG > SRR4302533.4280429/1‑94 (MQ=60)
ACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCG < SRR4302533.2157433/94‑1 (MQ=60)
CCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGA < SRR4302533.3959405/94‑1 (MQ=60)
CCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGGATTGCCGA > SRR4302533.4666106/1‑94 (MQ=60)
GATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATT < SRR4302533.3083424/94‑1 (MQ=60)
GATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATT < SRR4302533.5995416/94‑1 (MQ=60)
GATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATT < SRR4302533.4604076/94‑1 (MQ=60)
ATATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTA < SRR4302533.3101257/94‑1 (MQ=60)
TATTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTAC < SRR4302533.1481678/94‑1 (MQ=60)
TTTTCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTG < SRR4302533.5279216/94‑1 (MQ=60)
TCGACGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTA < SRR4302533.5173749/94‑1 (MQ=60)
CGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAG < SRR4302533.5167166/94‑1 (MQ=60)
CGCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCCTGGCGGTGGAAGCAGGTGTTGCCGCTTACTGGTACAAG > SRR4302533.4846579/1‑94 (MQ=60)
GCCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTGGCGGCTCGCGTGGTGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGT < SRR4302533.6198112/94‑1 (MQ=60)
CCCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGGGGAAGCCGGTATTGCCGATTCCTGGTACAAGCA > SRR4302533.2438290/1‑94 (MQ=60)
CCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGGAGCAGGGATTGCCGATTACTGGTACAAGTAT > SRR4302533.5029572/1‑94 (MQ=60)
CCAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTAT < SRR4302533.546200/94‑1 (MQ=60)
CAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATG < SRR4302533.111029/94‑1 (MQ=60)
CAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATG > SRR4302533.5925283/1‑94 (MQ=60)
CAGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGGATTGCCGATTACTGGTACAAGTATG > SRR4302533.1049562/1‑94 (MQ=60)
AGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGGATTGCCGATTACTGGTACAAGTATGT > SRR4302533.5726073/1‑94 (MQ=60)
AGGATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGGATTGCCGATTACTGGTACAAGTATGT > SRR4302533.3056088/1‑94 (MQ=60)
ATGAGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGG < SRR4302533.5553783/94‑1 (MQ=60)
AGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCT < SRR4302533.4185092/94‑1 (MQ=60)
AGGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCT < SRR4302533.3859280/94‑1 (MQ=60)
GGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTG < SRR4302533.476114/94‑1 (MQ=60)
GGAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTG < SRR4302533.5194200/94‑1 (MQ=60)
GAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGA < SRR4302533.3874844/94‑1 (MQ=60)
GAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGGATTGCCGATTACTGGTACAAGTATGTTGGTCTGA > SRR4302533.2326137/1‑94 (MQ=60)
GAATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGGGGAAGCAGGGATTGCCGATTACTGGTACAAGTATGTTGGTCTGA > SRR4302533.2060725/1‑94 (MQ=60)
ATATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGAAA < SRR4302533.5476333/94‑1 (MQ=60)
TATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGAAAG < SRR4302533.4359222/94‑1 (MQ=60)
ATCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGAAAGG < SRR4302533.1038012/94‑1 (MQ=60)
ATCGGGAGCCGGTGTGGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGAAAGG < SRR4302533.1072822/94‑1 (MQ=60)
TCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGAAAGGG < SRR4302533.6094224/94‑1 (MQ=60)
TCGGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGAAAGGG < SRR4302533.4939324/94‑1 (MQ=60)
GGGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGAAAGGGGC > SRR4302533.6131626/1‑94 (MQ=60)
GGAGCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGACGGTGGAAGCATGTATTGCCGATTACTGGTACAAGTATGTAGGTCTGAAAGGGGCA < SRR4302533.3215602/94‑1 (MQ=60)
GCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGAAAGGGGCAATT < SRR4302533.2563065/94‑1 (MQ=60)
GCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGAAAGGGGCAATT > SRR4302533.3694887/1‑94 (MQ=60)
GCCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGAAAGGGGCAATT < SRR4302533.3446762/94‑1 (MQ=60)
CCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGAAAGGGGCAATTT > SRR4302533.1493971/1‑94 (MQ=60)
CCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGAAAGGGGCAATTG > SRR4302533.381298/1‑94 (MQ=60)
CCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGAAAGGGGCAATTG < SRR4302533.3117003/94‑1 (MQ=60)
CCGGTGTTGCCTTCTAACGTTGCGGCTCGCGCGGCGGGGGAAGCAGGCATTGCCGATTACTGGTACAAGTATGTTGGTCTGAAAGGGGCAATTG > SRR4302533.2757382/1‑94 (MQ=60)
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CAGAGAAATTAGCAGGAGAAGGTCGCAATGTACGCGTAGTTTCCCTGCCCTCGACCGATATTTTCGACGCCCAGGATGAGGAATATCGGGAGTCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTATTGCCGATTACTGGTACAAGTATGTTGGTCTGAAAGGGGCAATTG > NC_000913/2579355‑2579540
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
