Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,596,026	T→C	D287G (GAC→GGC)	nlpB ←	lipoprotein‑34

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,596,026	0	T	C	100.0%	641.7 / NA	198	D287G (GAC→GGC)	nlpB	lipoprotein‑34
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (112/86); total (112/86)

Only 100 of 205 total aligned reads displayed.

TGTAGGCTGCTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGTCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACTTTTTCCAGCGCCGCT  >  NC_000913/2595936‑2596118

tGTAGGCTGCTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCg                                                                                            <  1:715728/93‑1 (MQ=255)

tGTAGGCTGCTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCg                                                                                            >  2:2590202/1‑93 (MQ=255)

 gTAGGCTGCTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGATCCTGCCAGCCGc                                                                                           >  1:5730594/1‑93 (MQ=255)

  tAGGCTGCTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCt                                                                                          <  1:2541470/93‑1 (MQ=255)

   aGGCTGCTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTg                                                                                         <  1:1221186/93‑1 (MQ=255)

   aGGCTGCTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTg                                                                                         >  2:1552262/1‑93 (MQ=255)

   aGGCTGCTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTg                                                                                         >  2:417866/1‑93 (MQ=255)

    ggCTGCTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGt                                                                                        <  1:6107524/93‑1 (MQ=255)

      ctgctgCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCa                                                                                      <  1:5218757/93‑1 (MQ=255)

          tgcGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACa                                                                                  >  1:5347283/1‑93 (MQ=255)

           gcGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAg                                                                                 <  2:3817429/93‑1 (MQ=255)

           gcGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAg                                                                                 >  1:4581113/1‑93 (MQ=255)

           gcGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAg                                                                                 >  2:741615/1‑93 (MQ=255)

           gcGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAg                                                                                 <  1:3998933/93‑1 (MQ=255)

            cGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGc                                                                                <  2:3542120/93‑1 (MQ=255)

            cGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGc                                                                                <  1:2986936/93‑1 (MQ=255)

              gTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCgg                                                                              >  2:5574379/1‑93 (MQ=255)

                 aTCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCtt                                                                           >  2:1769909/1‑93 (MQ=255)

                    tAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTtata                                                                        <  1:5325349/93‑1 (MQ=255)

                    tAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTtata                                                                        >  2:4423366/1‑93 (MQ=255)

                       aTCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGt                                                                     >  1:2082142/1‑93 (MQ=255)

                        tCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGtt                                                                    >  1:2377106/1‑93 (MQ=255)

                        tCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGtt                                                                    >  1:3284294/1‑93 (MQ=255)

                         cGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTa                                                                   <  2:3290460/93‑1 (MQ=255)

                          gCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTAc                                                                  >  2:4245183/1‑93 (MQ=255)

                          gCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTAc                                                                  <  2:5211147/93‑1 (MQ=255)

                          gCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTAc                                                                  <  2:5476185/93‑1 (MQ=255)

                           ccAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACg                                                                 <  1:5816885/93‑1 (MQ=255)

                           ccAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACg                                                                 <  1:1948225/93‑1 (MQ=255)

                            cAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACgg                                                                >  1:3436885/1‑93 (MQ=255)

                             aaCCTGAAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGc                                                               <  1:1873291/93‑1 (MQ=255)

                               ccTGCAGTTTATAGTCCCCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCa                                                             <  2:2756285/93‑1 (MQ=255)

                               ccTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGAAAGCGGCTTATAAGTTACGGcct                                                             >  1:1765397/1‑92 (MQ=255)

                                 tGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATg                                                           >  2:3353301/1‑93 (MQ=255)

                                 tGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATg                                                           <  1:6119739/93‑1 (MQ=255)

                                 tGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATg                                                           <  2:6047022/93‑1 (MQ=255)

                                 tGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATg                                                           >  1:476245/1‑93 (MQ=255)

                                   cAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGtt                                                         <  2:2493284/93‑1 (MQ=255)

                                   cAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGtt                                                         >  1:1463883/1‑93 (MQ=255)

                                   cAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGtt                                                         <  2:563398/93‑1 (MQ=255)

                                   cAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGtt                                                         <  1:6284687/93‑1 (MQ=255)

                                      tttATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGcc                                                      >  1:3081634/1‑93 (MQ=255)

                                      tttATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGcc                                                      >  1:5638092/1‑93 (MQ=255)

                                      tttATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGcc                                                      >  2:320294/1‑93 (MQ=255)

                                       ttATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGccc                                                     <  1:2225339/93‑1 (MQ=255)

                                       ttATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGccc                                                     <  1:3633226/93‑1 (MQ=255)

                                        tataGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCt                                                    >  2:1007420/1‑93 (MQ=255)

                                          taGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGc                                                  >  2:3639178/1‑93 (MQ=255)

                                          taGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGc                                                  >  1:2769339/1‑93 (MQ=255)

                                          taGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGc                                                  >  1:2582716/1‑93 (MQ=255)

                                            gTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGATCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCATGCGa                                                >  2:3116399/1‑93 (MQ=255)

                                              cACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAAc                                              <  2:342129/93‑1 (MQ=255)

                                               aCCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACg                                             >  1:6227600/1‑93 (MQ=255)

                                                ccGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACgg                                            <  1:3486153/93‑1 (MQ=255)

                                                 cGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACggg                                           <  1:1082611/93‑1 (MQ=255)

                                                 cGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACggg                                           >  2:2839362/1‑93 (MQ=255)

                                                   gATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGCACGGGTg                                         >  2:5090130/1‑93 (MQ=255)

                                                    aTGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGc                                        <  2:5809772/93‑1 (MQ=255)

                                                     tGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCt                                       <  2:6280504/93‑1 (MQ=255)

                                                       ccAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGt                                     >  2:2276838/1‑93 (MQ=255)

                                                       ccAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGt                                     >  2:3688743/1‑93 (MQ=255)

                                                        cAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTc                                    >  2:5118227/1‑93 (MQ=255)

                                                         aGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCg                                   >  1:2822786/1‑93 (MQ=255)

                                                            ccTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTc                                <  2:1717259/93‑1 (MQ=255)

                                                            ccTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTc                                <  1:2333473/93‑1 (MQ=255)

                                                            ccTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTc                                <  1:35183/93‑1 (MQ=255)

                                                             cTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCa                               >  2:1336026/1‑93 (MQ=255)

                                                             cTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCa                               >  2:5033529/1‑93 (MQ=255)

                                                               ggATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACt                             >  1:2257240/1‑93 (MQ=255)

                                                               ggATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACt                             >  1:168695/1‑93 (MQ=255)

                                                                 aTCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACttt                           >  1:3131491/1‑93 (MQ=255)

                                                                 aTCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACttt                           >  1:373249/1‑93 (MQ=255)

                                                                 aTCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACttt                           >  2:4806120/1‑93 (MQ=255)

                                                                  tcgctcgcGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTc                          >  2:5144377/1‑93 (MQ=255)

                                                                   cgctcgcGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCa                         <  2:5360673/93‑1 (MQ=255)

                                                                     ctcgcGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATg                       <  2:2940491/93‑1 (MQ=255)

                                                                      tcgcGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGc                      >  1:404329/1‑93 (MQ=255)

                                                                         cgcCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCa                   >  1:2915091/1‑93 (MQ=255)

                                                                          gcCCAGTTCCTGCCCGCCGCTGTCAGACAGCGGCTTATAAGTTACCGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCAc                  <  1:3686277/93‑1 (MQ=255)

                                                                          gcCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCAc                  >  2:1879960/1‑93 (MQ=255)

                                                                          gcCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCAc                  >  1:1507825/1‑93 (MQ=255)

                                                                          gcCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCAc                  <  2:388795/93‑1 (MQ=255)

                                                                          gcCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCAc                  >  2:2450571/1‑93 (MQ=255)

                                                                          gcCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCAc                  >  2:1600730/1‑93 (MQ=255)

                                                                          gcCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCAc                  >  1:2424795/1‑93 (MQ=255)

                                                                          gcCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGCTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCAc                  >  2:770905/1‑93 (MQ=255)

                                                                           cccAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACt                 >  2:397140/1‑93 (MQ=255)

                                                                           cccAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACt                 >  1:4136511/1‑93 (MQ=255)

                                                                             cAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACttt               >  2:5894243/1‑93 (MQ=255)

                                                                             cAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACttt               >  1:954949/1‑93 (MQ=255)

                                                                             cAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACttt               <  2:209292/93‑1 (MQ=255)

                                                                             cAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACttt               >  1:5964974/1‑93 (MQ=255)

                                                                             cAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACttt               >  1:3327537/1‑93 (MQ=255)

                                                                              aGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACtttt              >  1:1390644/1‑93 (MQ=255)

                                                                                 tCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACTTTTTcc           <  2:5255239/93‑1 (MQ=255)

                                                                                   cTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACTTTTTCCAg         <  2:5529264/93‑1 (MQ=255)

                                                                                      ccAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACTTTTTCCAgcgc      >  1:6042355/1‑93 (MQ=255)

                                                                                      ccAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACTTTTTCCAgcgc      <  1:1177210/93‑1 (MQ=255)

                                                                                       cAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCCCTTTTTCCAGcgcc     <  2:1233913/93‑1 (MQ=255)

                                                                                          tCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGAGTGCTGTCGGTCACTTTCATGCCCACTTTTTCCAGcgccgtt  <  2:6098420/93‑3 (MQ=255)

TGTAGGCTGCTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGTCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACTTTTTCCAGCGCCGCT  >  NC_000913/2595936‑2596118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AACTGTAGGCTGCTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGTCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACTTTTTCCAGCGCCGC  >  NC_000913/2595933‑2596117

AACTGTAGGCTGCTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGC                                                                                             >  SRR4302533.3005242/1‑94 (MQ=60)

AACTGTAGGCTGCTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGC                                                                                             >  SRR4302533.4277494/1‑94 (MQ=60)

 ACTGTAGGCTGCTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCC                                                                                            <  SRR4302533.1145768/94‑1 (MQ=60)

 ACTGTAGGCTGCTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCC                                                                                            <  SRR4302533.2882441/94‑1 (MQ=60)

   TGTAGGCTGCTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGC                                                                                          <  SRR4302533.719950/94‑1 (MQ=60)

   TGTAGGCTGCTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGC                                                                                          >  SRR4302533.1445971/1‑94 (MQ=60)

   TGTAGGCTGCTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGATCCTGCCAGCCGC                                                                                          >  SRR4302533.5765195/1‑94 (MQ=60)

    GTAGGCTGCTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCT                                                                                         >  SRR4302533.3162494/1‑94 (MQ=60)

    GTAGGCTGCTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCT                                                                                         <  SRR4302533.3426817/94‑1 (MQ=60)

     TAGGCTGCTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTG                                                                                        <  SRR4302533.2557116/94‑1 (MQ=60)

      AGGCTGCTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGT                                                                                       <  SRR4302533.1228512/94‑1 (MQ=60)

       GGCTGCTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTC                                                                                      <  SRR4302533.6144399/94‑1 (MQ=60)

         CTGCTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAG                                                                                    <  SRR4302533.5250168/94‑1 (MQ=60)

          TGCTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGA                                                                                   >  SRR4302533.1226410/1‑94 (MQ=60)

            CTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACA                                                                                 >  SRR4302533.334071/1‑94 (MQ=60)

            CTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACA                                                                                 >  SRR4302533.5379362/1‑94 (MQ=60)

            CTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACA                                                                                 <  SRR4302533.2416640/94‑1 (MQ=60)

             TGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAG                                                                                >  SRR4302533.4608872/1‑94 (MQ=60)

              GCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGC                                                                               <  SRR4302533.6290810/94‑1 (MQ=60)

              GCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGC                                                                               <  SRR4302533.4023278/94‑1 (MQ=60)

               CGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCG                                                                              <  SRR4302533.3473580/94‑1 (MQ=60)

               CGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCG                                                                              <  SRR4302533.3005209/94‑1 (MQ=60)

               CGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCG                                                                              <  SRR4302533.5661173/94‑1 (MQ=60)

                GGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGG                                                                             <  SRR4302533.2875153/94‑1 (MQ=60)

                  TTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCT                                                                           <  SRR4302533.3571891/94‑1 (MQ=60)

                       TAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAA                                                                      <  SRR4302533.5357262/94‑1 (MQ=60)

                        AAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAG                                                                     <  SRR4302533.1181049/94‑1 (MQ=60)

                        AAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAG                                                                     <  SRR4302533.311965/94‑1 (MQ=60)

                         AATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGT                                                                    >  SRR4302533.2094957/1‑94 (MQ=60)

                          ATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTT                                                                   <  SRR4302533.5885490/94‑1 (MQ=60)

                          ATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTT                                                                   >  SRR4302533.2391815/1‑94 (MQ=60)

                          ATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTT                                                                   >  SRR4302533.3304567/1‑94 (MQ=60)

                            CGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTAG                                                                 >  SRR4302533.462434/1‑94 (MQ=60)

                            CGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTAC                                                                 <  SRR4302533.6201465/94‑1 (MQ=60)

                             GCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACG                                                                <  SRR4302533.2616934/94‑1 (MQ=60)

                              CCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGG                                                               <  SRR4302533.5852023/94‑1 (MQ=60)

                              CCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGG                                                               <  SRR4302533.1960102/94‑1 (MQ=60)

                              CCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGG                                                               >  SRR4302533.2844047/1‑94 (MQ=60)

                              CCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGG                                                               >  SRR4302533.3458115/1‑94 (MQ=60)

                              CCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGC                                                               >  SRR4302533.2267469/1‑94 (MQ=60)

                                AACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCC                                                             >  SRR4302533.2459866/1‑94 (MQ=60)

                                AACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCC                                                             >  SRR4302533.904589/1‑94 (MQ=60)

                                AACCTGAAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCC                                                             <  SRR4302533.1884709/94‑1 (MQ=60)

                                 ACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCA                                                            >  SRR4302533.184052/1‑94 (MQ=60)

                                 ACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGAAAGCGGCTTATAAGTTACGGCCT                                                            >  SRR4302533.1776148/1‑94 (MQ=60)

                                   CTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATG                                                          >  SRR4302533.479087/1‑94 (MQ=60)

                                   CTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATG                                                          >  SRR4302533.6106938/1‑94 (MQ=60)

                                    TGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGT                                                         <  SRR4302533.6156644/94‑1 (MQ=60)

                                     GCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTT                                                        >  SRR4302533.1472707/1‑94 (MQ=60)

                                      CAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTG                                                       <  SRR4302533.6322188/94‑1 (MQ=60)

                                      CAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTG                                                       <  SRR4302533.5771129/94‑1 (MQ=60)

                                      CAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTG                                                       >  SRR4302533.1478342/1‑94 (MQ=60)

                                       AGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGC                                                      <  SRR4302533.4044080/94‑1 (MQ=60)

                                        GTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCC                                                     >  SRR4302533.5672181/1‑94 (MQ=60)

                                        GTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCC                                                     >  SRR4302533.3100541/1‑94 (MQ=60)

                                         TTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCC                                                    >  SRR4302533.3004349/1‑94 (MQ=60)

                                          TTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCT                                                   <  SRR4302533.2239078/94‑1 (MQ=60)

                                          TTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCT                                                   <  SRR4302533.1904789/94‑1 (MQ=60)

                                          TTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCT                                                   <  SRR4302533.3655576/94‑1 (MQ=60)

                                            ATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGC                                                 >  SRR4302533.2786334/1‑94 (MQ=60)

                                            ATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGC                                                 >  SRR4302533.2598599/1‑94 (MQ=60)

                                            ATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGC                                                 >  SRR4302533.5363602/1‑94 (MQ=60)

                                               GTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAA                                              >  SRR4302533.3661735/1‑94 (MQ=60)

                                                 CACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACG                                            >  SRR4302533.6264909/1‑94 (MQ=60)

                                                 CACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACG                                            <  SRR4302533.970854/94‑1 (MQ=60)

                                                  ACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGG                                           >  SRR4302533.2389501/1‑94 (MQ=60)

                                                   CCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGG                                          >  SRR4302533.256872/1‑94 (MQ=60)

                                                   CCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGG                                          <  SRR4302533.3507651/94‑1 (MQ=60)

                                                    CGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGT                                         <  SRR4302533.1088997/94‑1 (MQ=60)

                                                    CGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGT                                         <  SRR4302533.3791696/94‑1 (MQ=60)

                                                    CGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGT                                         <  SRR4302533.5323949/94‑1 (MQ=60)

                                                     GGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTG                                        >  SRR4302533.1716443/1‑94 (MQ=60)

                                                         GCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGT                                    >  SRR4302533.282978/1‑94 (MQ=60)

                                                          CCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTC                                   >  SRR4302533.5440721/1‑94 (MQ=60)

                                                           CAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCG                                  <  SRR4302533.6344007/94‑1 (MQ=60)

                                                           CAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCG                                  >  SRR4302533.2840157/1‑94 (MQ=60)

                                                             GGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGT                                >  SRR4302533.6154797/1‑94 (MQ=60)

                                                             GGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTAAGGCCATGTTGCCCTGCGAACGGGGGCTGTCGGT                                >  SRR4302533.2210256/1‑94 (MQ=60)

                                                              GCCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTC                               <  SRR4302533.5697536/94‑1 (MQ=60)

                                                               CCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCA                              <  SRR4302533.2347920/94‑1 (MQ=60)

                                                               CCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCA                              >  SRR4302533.3095390/1‑94 (MQ=60)

                                                               CCTGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCA                              <  SRR4302533.35419/94‑1 (MQ=60)

                                                                 TGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACT                            >  SRR4302533.2271207/1‑94 (MQ=60)

                                                                 TGGATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACT                            >  SRR4302533.169763/1‑94 (MQ=60)

                                                                   GATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTT                          >  SRR4302533.3150744/1‑94 (MQ=60)

                                                                   GATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTT                          >  SRR4302533.375503/1‑94 (MQ=60)

                                                                    ATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTC                         >  SRR4302533.3740448/1‑94 (MQ=60)

                                                                    ATCGCTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTC                         >  SRR4302533.5051034/1‑94 (MQ=60)

                                                                        CTCGCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGC                     >  SRR4302533.406764/1‑94 (MQ=60)

                                                                           GCGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCA                  >  SRR4302533.2932971/1‑94 (MQ=60)

                                                                            CGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCAC                 >  SRR4302533.2439765/1‑94 (MQ=60)

                                                                            CGCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCAC                 >  SRR4302533.1516914/1‑94 (MQ=60)

                                                                             GCCCAGTTCCTGCCCGCCGCTGTCAGACAGCGGCTTATAAGTTACCGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACT                <  SRR4302533.3708934/94‑1 (MQ=60)

                                                                             GCCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACT                >  SRR4302533.4161615/1‑94 (MQ=60)

                                                                              CCCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATTCCCACTT               >  SRR4302533.3519539/1‑94 (MQ=60)

                                                                               CCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACTTT              >  SRR4302533.6001071/1‑94 (MQ=60)

                                                                               CCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACTTT              >  SRR4302533.960557/1‑94 (MQ=60)

                                                                               CCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACTTT              >  SRR4302533.1326004/1‑94 (MQ=60)

                                                                               CCAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACTTT              >  SRR4302533.3348100/1‑94 (MQ=60)

                                                                                CAGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACTTTT             >  SRR4302533.1399020/1‑94 (MQ=60)

                                                                                 AGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACTTTTT            >  SRR4302533.2280960/1‑94 (MQ=60)

                                                                                 AGTTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACTTTTT            <  SRR4302533.4310390/94‑1 (MQ=60)

                                                                                   GTCCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACTTTTTCC          <  SRR4302533.6075948/94‑1 (MQ=60)

                                                                                     CCTGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACTTTTTCCAG        <  SRR4302533.4140279/94‑1 (MQ=60)

                                                                                       TGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACTTTTTCCCGCG      >  SRR4302533.1675650/1‑94 (MQ=60)

                                                                                       TGCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACTTTTTCCAGCG      >  SRR4302533.2019432/1‑94 (MQ=60)

                                                                                        GCCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACTTTTTCCAGCGC     >  SRR4302533.6078965/1‑94 (MQ=60)

                                                                                         CCAGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACTTTTTCCAGCGCC    <  SRR4302533.1184275/94‑1 (MQ=60)

                                                                                           AGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACTTTTTCCAGCGCCGC  >  SRR4302533.6027970/1‑94 (MQ=60)

                                                                                           AGCCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCATGCGAACGGGGGCTGTCGGTCACTTTCATGCCCACTTTTTTCAGCCCCGC  >  SRR4302533.4465787/1‑94 (MQ=60)

                                                                                           AGCCGCTGTCAGACAGCGGCTTATAAGTTACCGCCATGTTGCCCTGCGAACGGGTGCTGTCGCTCACTTTCATGCCCCCTTTTTCCAGCGCCGC  >  SRR4302533.2791125/1‑94 (MQ=60)

AACTGTAGGCTGCTGCGGTTATCTAAATCGCCAACCTGCAGTTTATAGTCACCGGATGCCAGGCCTGGATCGCTCGCGCCCAGTTCCTGCCAGTCGCTGTCAGACAGCGGCTTATAAGTTACGGCCATGTTGCCCTGCGAACGGGTGCTGTCGGTCACTTTCATGCCCACTTTTTCCAGCGCCGC  >  NC_000913/2595933‑2596117

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`