Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,597,825 |
A→G |
intergenic (‑45/‑101) |
dapA ← / → b2479 |
dihydrodipicolinate synthase/GcvR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,597,825 | 0 | A | G | 100.0%
| 731.2
/ NA
| 224 | intergenic (‑45/‑101) | dapA/b2479 | dihydrodipicolinate synthase/GcvR |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (109/115); total (109/115) |
Only 100 of 230 total aligned reads displayed.
TTTCATCCATCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAG > NC_000913/2597735‑2597914
|
tttCATCCATCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGtgtg < 2:1594327/93‑1 (MQ=255)
tCATCCATCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGc < 2:4243839/93‑1 (MQ=255)
catccatcGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCa < 1:2218791/93‑1 (MQ=255)
atccatcGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCAt > 1:4659199/1‑93 (MQ=255)
catcGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTaa > 1:2551880/1‑93 (MQ=255)
atcGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTaaa > 2:1210614/1‑93 (MQ=255)
tcGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTTAATGGTACGTTTGGTGTGGCATTaaaa > 1:4037431/1‑93 (MQ=255)
tcGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTaaaa < 1:3606789/93‑1 (MQ=255)
cGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAaag > 2:5870396/1‑93 (MQ=255)
ggAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAaagc < 1:3474738/93‑1 (MQ=255)
gAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAaagca > 2:1113369/1‑93 (MQ=255)
aGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAaagcaa < 1:5509041/93‑1 (MQ=255)
gTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAaagcaag > 1:3457249/1‑93 (MQ=255)
gTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAaagcaag > 2:1775478/1‑93 (MQ=255)
atAACAATCGCAACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAaagcaag < 2:4648623/92‑1 (MQ=255)
tAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAaagcaagc < 2:3672774/93‑1 (MQ=255)
tAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAaagcaagc > 2:4072289/1‑93 (MQ=255)
aaCAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAagcaagca > 2:6079950/1‑93 (MQ=255)
aCAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGcag > 2:3568382/1‑93 (MQ=255)
cAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGcaga < 1:6200714/93‑1 (MQ=255)
aTCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGcagaca < 2:514120/93‑1 (MQ=255)
gcgACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGaa > 1:2928716/1‑93 (MQ=255)
gcgACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGaa < 1:496781/93‑1 (MQ=255)
gcgACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGaa < 1:6262064/93‑1 (MQ=255)
cgACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAAc < 2:2276610/93‑1 (MQ=255)
cgACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAAc < 1:6018675/93‑1 (MQ=255)
cgACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAAc > 1:2002920/1‑93 (MQ=255)
gACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAAcc > 2:1361856/1‑93 (MQ=255)
cAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGt < 2:679979/93‑1 (MQ=255)
cAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGt < 2:5931898/93‑1 (MQ=255)
aaTACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGtt < 1:193955/93‑1 (MQ=255)
aaTACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGtt < 1:4766697/93‑1 (MQ=255)
aaTACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGtt > 2:6230860/1‑93 (MQ=255)
atccTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTc < 1:168125/90‑1 (MQ=255)
aTACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTc > 2:1715909/1‑93 (MQ=255)
tACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCt > 1:5238914/1‑93 (MQ=255)
tACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCt > 1:5404933/1‑93 (MQ=255)
aCTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTg > 2:223778/1‑93 (MQ=255)
cTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGa < 1:2878638/93‑1 (MQ=255)
tCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGAtt < 1:1452092/93‑1 (MQ=255)
gTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGAttgttg < 1:5160293/93‑1 (MQ=255)
gTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGAttgttg < 1:2610870/93‑1 (MQ=255)
tGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATtgttgt > 2:440725/1‑93 (MQ=255)
tGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATtgttgt < 2:5562611/93‑1 (MQ=255)
gAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTa < 1:1052274/93‑1 (MQ=255)
gAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTa > 2:5677732/1‑93 (MQ=255)
gAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTa < 1:1772333/93‑1 (MQ=255)
cATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGc > 1:689761/1‑93 (MQ=255)
aTGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCa < 1:958780/93‑1 (MQ=255)
aTGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCa < 1:3148976/93‑1 (MQ=255)
tGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCAt > 2:4326534/1‑93 (MQ=255)
tGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCAt < 2:4875176/93‑1 (MQ=255)
gggCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATg < 2:3322222/93‑1 (MQ=255)
gCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGtt < 1:918148/93‑1 (MQ=255)
ccATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGttt > 1:5704147/1‑93 (MQ=255)
ccATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGttt < 2:2161558/93‑1 (MQ=255)
cATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGtttt > 1:2767847/1‑93 (MQ=255)
cATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGtttt > 2:1947978/1‑93 (MQ=255)
aTCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGttttt > 2:5352116/1‑93 (MQ=255)
aTCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGttttt > 1:3026187/1‑93 (MQ=255)
aTCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGttttt < 1:4904545/93‑1 (MQ=255)
aTCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGttttt < 1:5026216/93‑1 (MQ=255)
tCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGtttttt > 2:1257492/1‑93 (MQ=255)
tCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGtttttt < 1:2178765/93‑1 (MQ=255)
tctGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCATGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTa < 1:3384669/93‑1 (MQ=255)
tctGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGttttttttt > 1:5817999/1‑92 (MQ=255)
tctGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTa < 1:5576728/93‑1 (MQ=255)
tctGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTa < 2:5386201/93‑1 (MQ=255)
tgtgCAAACAAGTGTCTCACTGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATg > 2:6153673/1‑93 (MQ=255)
gtgCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGc < 1:1555528/93‑1 (MQ=255)
gtgCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGc < 2:3284753/93‑1 (MQ=255)
tccAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCt < 2:4159560/91‑1 (MQ=255)
cAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCttt < 1:2737776/93‑1 (MQ=255)
aaaCAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTc > 1:4192040/1‑93 (MQ=255)
aaaCAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTc > 2:5030421/1‑93 (MQ=255)
aaaCAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTc > 2:2770731/1‑93 (MQ=255)
aCAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCt > 2:2385570/1‑93 (MQ=255)
cAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCtt > 2:5247332/1‑93 (MQ=255)
aGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTaa < 2:2549252/93‑1 (MQ=255)
aGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTaa > 2:1969478/1‑93 (MQ=255)
aGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTaa > 1:1152102/1‑93 (MQ=255)
tctcAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGaac < 1:3856273/93‑1 (MQ=255)
tcAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGaacaa < 1:2375584/93‑1 (MQ=255)
tcAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGaacaa > 1:2635870/1‑93 (MQ=255)
tcAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGaacaa > 1:1100788/1‑93 (MQ=255)
cAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGaacaac < 1:3786936/93‑1 (MQ=255)
aTGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTc > 2:4825805/1‑93 (MQ=255)
tGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCa > 2:627487/1‑93 (MQ=255)
ggTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTTAGAACCACTCAc > 2:301087/1‑93 (MQ=255)
ggTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCAc > 2:2060315/1‑93 (MQ=255)
aCGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCAcccc < 1:4588141/93‑1 (MQ=255)
aCGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCAcccc < 1:1203010/93‑1 (MQ=255)
gTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCtt > 1:4800098/1‑93 (MQ=255)
tttGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTa > 2:577397/1‑93 (MQ=255)
tttGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTa > 2:1853003/1‑93 (MQ=255)
tttGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTa < 2:127240/93‑1 (MQ=255)
tGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTaaa < 1:4518384/93‑1 (MQ=255)
tGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTaaa < 1:1431054/93‑1 (MQ=255)
ggTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAg < 2:3430050/93‑1 (MQ=255)
ggTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAg > 2:5467075/1‑93 (MQ=255)
|
TTTCATCCATCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAG > NC_000913/2597735‑2597914
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTTTTTCATCCATCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAAT > NC_000913/2597732‑2597918
|
CTTTTTCATCCATCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTG < SRR4302533.4187246/94‑1 (MQ=60)
CTTTTTCATCCATCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTG < SRR4302533.5971911/94‑1 (MQ=60)
TTTTTCATCCATCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGT < SRR4302533.1051098/94‑1 (MQ=60)
TTTTCATCCATCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTG < SRR4302533.4691150/94‑1 (MQ=60)
TTTCATCCATCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGG < SRR4302533.4105942/94‑1 (MQ=60)
CATCCATCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCAT > SRR4302533.4687433/1‑94 (MQ=60)
CATCCATCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCAT < SRR4302533.2232490/94‑1 (MQ=60)
ATCCATCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATT > SRR4302533.5205963/1‑94 (MQ=60)
ATCCATCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATT < SRR4302533.1184572/94‑1 (MQ=60)
TCCATCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTA > SRR4302533.3956641/1‑94 (MQ=60)
CCATCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAA > SRR4302533.2567583/1‑94 (MQ=60)
CCATCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAA > SRR4302533.3416971/1‑94 (MQ=60)
CATCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTATA > SRR4302533.2450852/1‑94 (MQ=60)
ATCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTTAATGGTACGTTTGGTGTGGCATTAAAA > SRR4302533.4062001/1‑94 (MQ=60)
ATCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAA < SRR4302533.5141951/94‑1 (MQ=60)
TCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAG < SRR4302533.3628993/94‑1 (MQ=60)
CGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAGCAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGC < SRR4302533.5570552/94‑1 (MQ=60)
CGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGC > SRR4302533.3710544/1‑94 (MQ=60)
GGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCA < SRR4302533.3496178/94‑1 (MQ=60)
GGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCA < SRR4302533.5392098/94‑1 (MQ=60)
GGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCA > SRR4302533.2950121/1‑94 (MQ=60)
AGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAG < SRR4302533.173131/94‑1 (MQ=60)
AGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAG > SRR4302533.3478593/1‑94 (MQ=60)
AGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAG < SRR4302533.5542299/94‑1 (MQ=60)
GTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGC > SRR4302533.2764710/1‑94 (MQ=60)
GTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGC > SRR4302533.2798904/1‑94 (MQ=60)
TAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCA < SRR4302533.1438020/94‑1 (MQ=60)
AACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTTCGCTTGGTGTGGCATTAATAGCAAGCAG > SRR4302533.2897530/1‑94 (MQ=60)
AACAATCGCGACAATACTTCCCGTGAACATGGGCCACCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAG > SRR4302533.1961503/1‑94 (MQ=60)
ACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGA > SRR4302533.109214/1‑94 (MQ=60)
CAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGAC < SRR4302533.5449914/94‑1 (MQ=60)
CAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGAC > SRR4302533.4624519/1‑94 (MQ=60)
CAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGAC < SRR4302533.3544215/94‑1 (MQ=60)
CAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGAC < SRR4302533.6237906/94‑1 (MQ=60)
ATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAG < SRR4302533.1569853/94‑1 (MQ=60)
CGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAA > SRR4302533.2946632/1‑94 (MQ=60)
GCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAAC > SRR4302533.2015257/1‑94 (MQ=60)
GCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAAC < SRR4302533.6299500/94‑1 (MQ=60)
GCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAAC < SRR4302533.499743/94‑1 (MQ=60)
GCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAAC < SRR4302533.211704/94‑1 (MQ=60)
CGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACC < SRR4302533.6055146/94‑1 (MQ=60)
CGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACC < SRR4302533.4817159/94‑1 (MQ=60)
GACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCG > SRR4302533.917449/1‑94 (MQ=60)
CAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTT > SRR4302533.1545370/1‑94 (MQ=60)
AATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTC < SRR4302533.195181/94‑1 (MQ=60)
AATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTC < SRR4302533.4795598/94‑1 (MQ=60)
ATCCTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCT < SRR4302533.169186/94‑1 (MQ=60)
ATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCT > SRR4302533.5270413/1‑94 (MQ=60)
ATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCT > SRR4302533.5437412/1‑94 (MQ=60)
TACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTG < SRR4302533.1441265/94‑1 (MQ=60)
ACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGA > SRR4302533.3794683/1‑94 (MQ=60)
ACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGA > SRR4302533.570006/1‑94 (MQ=60)
CTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGAT < SRR4302533.2896349/94‑1 (MQ=60)
TTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATT > SRR4302533.2721063/1‑94 (MQ=60)
TTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATT < SRR4302533.4169933/94‑1 (MQ=60)
TTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATT < SRR4302533.1999910/94‑1 (MQ=60)
TCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTG < SRR4302533.5739593/94‑1 (MQ=60)
TCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTG < SRR4302533.1460854/94‑1 (MQ=60)
CCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTT < SRR4302533.629158/94‑1 (MQ=60)
CCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTT < SRR4302533.4938531/94‑1 (MQ=60)
CCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTT < SRR4302533.4938533/94‑1 (MQ=60)
GTNANCNNGGGCCATCCTCTGNNCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGT < SRR4302533.5986821/94‑1 (MQ=60)
GTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGT < SRR4302533.2626896/94‑1 (MQ=60)
GTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGT < SRR4302533.5191435/94‑1 (MQ=60)
TGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTA > SRR4302533.1571668/1‑94 (MQ=60)
GAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTAT < SRR4302533.4999665/94‑1 (MQ=60)
GAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTAT < SRR4302533.1058470/94‑1 (MQ=60)
GAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTAT < SRR4302533.1783125/94‑1 (MQ=60)
GAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTAT > SRR4302533.2210944/1‑94 (MQ=60)
GAACAGTGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTAT < SRR4302533.2650300/94‑1 (MQ=60)
AACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATG > SRR4302533.111862/1‑94 (MQ=60)
AACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATG < SRR4302533.5697130/94‑1 (MQ=60)
ACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGC > SRR4302533.693840/1‑94 (MQ=60)
ATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCAT < SRR4302533.964418/94‑1 (MQ=60)
ATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCAT < SRR4302533.3168336/94‑1 (MQ=60)
GGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTT > SRR4302533.1865873/1‑94 (MQ=60)
GCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTT < SRR4302533.923542/94‑1 (MQ=60)
GCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTT > SRR4302533.5738602/1‑94 (MQ=60)
CCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTT > SRR4302533.2691022/1‑94 (MQ=60)
CCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTT > SRR4302533.2784826/1‑94 (MQ=60)
CCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTT > SRR4302533.2342079/1‑94 (MQ=60)
CATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTT > SRR4302533.3044705/1‑94 (MQ=60)
ATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTT < SRR4302533.5056650/94‑1 (MQ=60)
ATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTT < SRR4302533.4934264/94‑1 (MQ=60)
TCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTT < SRR4302533.2192196/94‑1 (MQ=60)
CTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTT > SRR4302533.5853145/1‑94 (MQ=60)
CTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTA < SRR4302533.3187062/94‑1 (MQ=60)
TCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCATGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTAT < SRR4302533.3405565/94‑1 (MQ=60)
TCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTAT < SRR4302533.522212/94‑1 (MQ=60)
TCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTAT < SRR4302533.4615052/94‑1 (MQ=60)
TCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTAT < SRR4302533.5610431/94‑1 (MQ=60)
CTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGACCCGTTCTGATTGTTGTATGCATGTTTTTTTTATG < SRR4302533.5902392/94‑1 (MQ=60)
CTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATG < SRR4302533.4759859/94‑1 (MQ=60)
CTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATG > SRR4302533.2922007/1‑94 (MQ=60)
GTGCAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCT < SRR4302533.1564892/94‑1 (MQ=60)
CAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTC < SRR4302533.2754565/94‑1 (MQ=60)
CAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTC > SRR4302533.2406821/1‑94 (MQ=60)
CAAACAAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTC > SRR4302533.4217412/1‑94 (MQ=60)
AAGTGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAA > SRR4302533.1159001/1‑94 (MQ=60)
TGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAA < SRR4302533.6108585/94‑1 (MQ=60)
TGTCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAA > SRR4302533.710580/1‑94 (MQ=60)
TCTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACA < SRR4302533.3879818/94‑1 (MQ=60)
CTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAA > SRR4302533.2652071/1‑94 (MQ=60)
CTCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAA > SRR4302533.1107314/1‑94 (MQ=60)
TCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAAC < SRR4302533.2390284/94‑1 (MQ=60)
TCAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAAC < SRR4302533.3480042/94‑1 (MQ=60)
CAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACT > SRR4302533.479056/1‑94 (MQ=60)
CAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACT < SRR4302533.4238773/94‑1 (MQ=60)
CAATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACT < SRR4302533.3810124/94‑1 (MQ=60)
AATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTC < SRR4302533.954585/94‑1 (MQ=60)
ATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCA > SRR4302533.3853321/1‑94 (MQ=60)
ATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCA > SRR4302533.6299845/1‑94 (MQ=60)
ATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCA < SRR4302533.341318/94‑1 (MQ=60)
ATGGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCA < SRR4302533.484515/94‑1 (MQ=60)
GGTACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACC > SRR4302533.2595968/1‑94 (MQ=60)
ACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCT < SRR4302533.4615932/94‑1 (MQ=60)
ACGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCT < SRR4302533.1210241/94‑1 (MQ=60)
CGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTT > SRR4302533.4829173/1‑94 (MQ=60)
CGTTTGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTT < SRR4302533.6215129/94‑1 (MQ=60)
TGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAG > SRR4302533.1343630/1‑94 (MQ=60)
TGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAG > SRR4302533.3132929/1‑94 (MQ=60)
TGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAG < SRR4302533.1439703/94‑1 (MQ=60)
TGGTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAG < SRR4302533.4545749/94‑1 (MQ=60)
GTGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGA < SRR4302533.2370953/94‑1 (MQ=60)
TGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAA < SRR4302533.4376355/94‑1 (MQ=60)
TGTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAA < SRR4302533.3352278/94‑1 (MQ=60)
TGTGGCATTAAAAGCAAGCACACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAA > SRR4302533.3282908/1‑94 (MQ=60)
GTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAAT > SRR4302533.2316634/1‑94 (MQ=60)
GTGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAAT < SRR4302533.4786623/94‑1 (MQ=60)
|
CTTTTTCATCCATCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAAT > NC_000913/2597732‑2597918
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
