Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,680,177 |
(C)7→8 |
coding (682/3375 nt) |
yphG ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,680,170 | 1 | . | C | 93.3%
| 537.1
/ 30.2
| 181 | coding (689/3375 nt) | yphG | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (4/8); new base C (82/86); total (87/94) |
| Fisher's exact test for biased strand distribution p-value = 3.77e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 |
Only 100 of 214 total aligned reads displayed.
AAGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGC > NC_000913/2680078‑2680256
|
aaGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCt‑t > 2:3367323/1‑93 (MQ=255)
aGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑‑c < 1:5454011/93‑1 (MQ=255)
aGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑‑c > 1:1694047/1‑93 (MQ=255)
aGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCACT‑T‑‑c > 2:186872/1‑93 (MQ=255)
gTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑‑cc < 2:4545918/93‑1 (MQ=255)
gCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑‑ccc‑c < 2:540688/93‑1 (MQ=255)
ggTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑‑ccc‑c‑ccc > 2:2851075/1‑93 (MQ=255)
gTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑‑ccc‑c‑cccc > 2:201739/1‑92 (MQ=255)
gTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑‑ccc‑c‑cccc > 1:341379/1‑92 (MQ=255)
gTAGCGATGGGAAAAGCGGAGACGGCCCGTTTCCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑‑ccc‑c‑cccc < 1:1716665/93‑2 (MQ=255)
gCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑‑CCC‑C‑CCCcttt < 2:1007754/93‑2 (MQ=255)
ggATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑‑CCC‑C‑CCCctttc < 1:6056406/92‑3 (MQ=255)
gATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCa > 1:4472804/1‑93 (MQ=255)
gATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCa > 2:3188156/1‑93 (MQ=255)
aTGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCAc < 1:1033839/93‑1 (MQ=255)
aTGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCAc < 1:2778042/93‑1 (MQ=255)
tGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACt > 1:1319021/1‑93 (MQ=255)
ggggAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGTTGGGAAGGCGCTCTGATGCCCT‑T‑‑CCC‑CACCCTTTCACTg > 2:1665371/1‑93 (MQ=255)
ggggAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTg > 1:3498072/1‑93 (MQ=255)
gggAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGc < 2:2808707/93‑1 (MQ=255)
ggAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGcc > 1:2822743/1‑93 (MQ=255)
ggAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGcc < 2:489103/93‑1 (MQ=255)
gAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCg < 1:6135485/93‑1 (MQ=255)
gAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCg > 1:2166371/1‑93 (MQ=255)
aaaGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGcccg > 2:4639615/1‑91 (MQ=255)
aaaGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCgg > 2:244518/1‑93 (MQ=255)
aaaGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCgg < 2:217487/93‑1 (MQ=255)
aaaGCGGAAAGGGCCTTTTTGCCGGAATAAAACCCCGCCGTAACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCgg < 2:5664738/93‑1 (MQ=255)
aGCGGAGACGGCCCTTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGt < 1:5620403/93‑1 (MQ=255)
aGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCC‑C‑CCCTTTCACTGCCggg > 2:4965143/1‑93 (MQ=255)
gCGGAGACGGCCCTTTTGCTGGAATCAACCCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGtt < 2:1406974/93‑1 (MQ=255)
gCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGtt < 1:1239525/93‑1 (MQ=255)
cGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTg < 1:5116931/93‑1 (MQ=255)
ggAGCCGGCCCGTTCGCCGTGATCAAACACCGCCGTTACATGCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCC‑C‑CCCTTTCACTGCCGGGTTg < 2:3011143/93‑1 (MQ=255)
ggAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTgg > 2:3439419/1‑93 (MQ=255)
ggAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTgg < 2:4271218/93‑1 (MQ=255)
gagaCGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGc > 1:3226244/1‑93 (MQ=255)
gagaCGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TA‑CCC‑C‑CCCTTTCACTGCCGGGTTGGc > 1:3096648/1‑93 (MQ=255)
gaCGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGccc < 1:3341364/93‑1 (MQ=255)
gaCGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGccc > 1:2893307/1‑93 (MQ=255)
gaCGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGccc < 1:2764039/93‑1 (MQ=255)
gaCGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGccc > 2:5083274/1‑93 (MQ=255)
cGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCccac > 2:1498151/1‑93 (MQ=255)
ggCCGGTTTGCGGTGATCAAACACCGCCGTTCCATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCccacc < 2:6076434/93‑1 (MQ=255)
gCCCGTTTTCCGTGATCAAACCCCGCCGTTACGTCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCccacca < 1:5281403/93‑1 (MQ=255)
cccGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCcaccac > 2:4591707/1‑93 (MQ=255)
cccGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCcaccac < 2:5884186/93‑1 (MQ=255)
cccGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCAT‑T‑‑CCCAC‑CCCTTTCACTGCCGGGCTCGCCcaccac > 2:2651623/1‑93 (MQ=255)
ccGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACcaca < 1:1062004/93‑1 (MQ=255)
cGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACaa < 1:4020580/93‑1 (MQ=255)
cGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACaa > 1:388188/1‑93 (MQ=255)
cGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑‑CCCGC‑CCCTTTCACTGCCGGGTTGGCCCACCACaa > 1:1928603/1‑93 (MQ=255)
cGTTTCCCGTGATCAAACACCGCCGTTACAGCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACaa < 2:1027759/93‑1 (MQ=255)
tttGCCGTGATCAAACCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGa < 1:2366623/93‑1 (MQ=255)
tGCCGTGATCAAACCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGaaa < 1:5219804/93‑1 (MQ=255)
ccGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATg > 1:2602585/1‑93 (MQ=255)
cGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGa < 2:1352559/93‑1 (MQ=255)
gTGATCAAACCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGAc < 1:5668558/93‑1 (MQ=255)
gTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGAc > 2:4386002/1‑93 (MQ=255)
gTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGAc < 1:3397104/93‑1 (MQ=255)
gTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGAc < 1:5761755/93‑1 (MQ=255)
gATCAACCCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGAcgc < 1:3656719/93‑1 (MQ=255)
gATCAAACCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGAcgc < 1:2686533/93‑1 (MQ=255)
gATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGAcgc > 1:5208601/1‑93 (MQ=255)
ataaaaCACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGAcgcg < 2:66724/90‑1 (MQ=255)
aTCAAACACCGCCGTTACATCCGGCGGGAAAACGCTCTTATGCCCT‑T‑‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACgcgg > 1:4841741/1‑93 (MQ=255)
tCAACCACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACgcgg < 1:2631558/93‑1 (MQ=255)
tCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACgcgg < 1:5301393/93‑1 (MQ=255)
aaaaCACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACgcggc < 1:637449/92‑1 (MQ=255)
acacCGCCGTTACATCCGGCGGTAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCggcgtg < 1:5559403/93‑1 (MQ=255)
acacCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCggcgtg > 1:2043819/1‑93 (MQ=255)
ccccgccgTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCggcgtgg < 2:325363/91‑1 (MQ=255)
cccgccgTTGCATCGGGCGGGAAGACGCTCTGATGCCCTAC‑‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCggcgtggc < 1:948330/92‑1 (MQ=255)
cccgccgTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCggcgtggc < 2:4122064/92‑1 (MQ=255)
ccgccgTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCggcgtggcg > 2:2274594/1‑93 (MQ=255)
gccgTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCCCTGCCGGGGTGGCCCACCACAAGAAATGACCCggcgtggcgtc > 2:2365647/1‑92 (MQ=255)
cgTTACATCCGGCGGGAAGACGCTCTGATGCCCTGC‑‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTcc < 1:182886/93‑1 (MQ=255)
cgTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTcc > 2:2033850/1‑93 (MQ=255)
cgTCACAGCCGGCGGGAAGACGCTCTGATCCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTcc < 1:1110459/93‑1 (MQ=255)
gTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTccc > 1:3922258/1‑93 (MQ=255)
ttACATCCGGCGGGAAGACGCTCTGATGCCCTCC‑‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCg > 1:6222462/1‑93 (MQ=255)
tACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGt > 2:1206215/1‑93 (MQ=255)
tCCGGGGGGAAAGCCCTCCGGTGCCCT‑TCCCCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTtat < 2:3791138/93‑1 (MQ=255)
tCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACTACAAGAAATGACGCGGCGTGGCGTTCCCGTtata > 2:3953643/1‑93 (MQ=255)
tCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTtata > 2:2597381/1‑93 (MQ=255)
cggcggGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGa > 1:1547777/1‑93 (MQ=255)
ggcggGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGAc < 1:2254737/93‑1 (MQ=255)
ggggAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGAcgc < 2:4034559/92‑1 (MQ=255)
gggAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGAcgcg > 2:1809729/1‑93 (MQ=255)
gAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGc < 1:4150611/93‑1 (MQ=255)
aGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTg < 2:6283239/93‑1 (MQ=255)
gCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGa > 1:1484552/1‑93 (MQ=255)
ctctGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGAt < 1:4120927/93‑1 (MQ=255)
cttGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGAtt < 1:3750231/91‑1 (MQ=255)
cctGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGAtt < 2:915643/92‑1 (MQ=255)
gATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTcc > 2:5167898/1‑93 (MQ=255)
gATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTcc < 2:3099701/93‑1 (MQ=255)
gATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTcc < 2:796858/93‑1 (MQ=255)
aTGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCa < 2:5354882/93‑1 (MQ=255)
gCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAgc < 2:3533746/93‑1 (MQ=255)
|
AAGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGC > NC_000913/2680078‑2680256
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGG > NC_000913/2680084‑2680270
|
CGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑‑CCC‑C‑CCC > SRR4302533.3675300/1‑94 (MQ=60)
GGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑‑CCC‑C‑CCCC > SRR4302533.343463/1‑94 (MQ=60)
GTAGCGATGGGAAAAGCGGAGACGGCCCGTTTCCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑‑CCC‑C‑CCCCT < SRR4302533.1727071/94‑1 (MQ=60)
TAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑‑CCC‑C‑CCCCTT > SRR4302533.5538111/1‑94 (MQ=60)
TAGCGAGGGGGAAGGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑‑CCC‑C‑CCCCTT < SRR4302533.3425344/94‑1 (MQ=60)
GGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCA < SRR4302533.6093080/94‑1 (MQ=60)
CGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCA > SRR4302533.4499857/1‑94 (MQ=60)
ATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACT < SRR4302533.1039920/94‑1 (MQ=60)
ATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACT < SRR4302533.2795106/94‑1 (MQ=60)
ATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACT > SRR4302533.1326934/1‑94 (MQ=60)
TGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTG > SRR4302533.5322221/1‑94 (MQ=60)
TGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTG > SRR4302533.5304600/1‑94 (MQ=60)
TGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTG > SRR4302533.3519643/1‑94 (MQ=60)
GGGAAAGCGGAGACGGCCCTTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCC < SRR4302533.5772512/94‑1 (MQ=60)
GGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCC > SRR4302533.2840114/1‑94 (MQ=60)
GGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCG > SRR4302533.2179697/1‑94 (MQ=60)
GAAGGCGCAGACCGCCGGTTTGCCGTGATCAACCCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGG < SRR4302533.981970/94‑1 (MQ=60)
GAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGG < SRR4302533.6172452/94‑1 (MQ=60)
AAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGG > SRR4302533.652250/1‑94 (MQ=60)
AACCGGAGACGCCCCGTTTGCCGTGACCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGT < SRR4302533.5154632/94‑1 (MQ=60)
AGCGGAGACGGCCCTTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTT < SRR4302533.5654373/94‑1 (MQ=60)
AGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTT < SRR4302533.4167347/94‑1 (MQ=60)
AGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCACT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTT > SRR4302533.1292083/1‑94 (MQ=60)
GCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTG < SRR4302533.1246931/94‑1 (MQ=60)
CGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGG > SRR4302533.3795106/1‑94 (MQ=60)
CGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGG < SRR4302533.5147854/94‑1 (MQ=60)
GGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGC > SRR4302533.3246137/1‑94 (MQ=60)
GGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TA‑CCC‑C‑CCCTTTCACTGCCGGGTTGGC > SRR4302533.3115685/1‑94 (MQ=60)
AGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCC > SRR4302533.2911089/1‑94 (MQ=60)
GACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCA < SRR4302533.2780986/94‑1 (MQ=60)
GACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCA < SRR4302533.3362017/94‑1 (MQ=60)
GGCCCGTTTGCTGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCA > SRR4302533.2463411/1‑94 (MQ=60)
GGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCC > SRR4302533.6198953/1‑94 (MQ=60)
GCCCGTTTTCCGTGATCAAACCCCGCCGTTACGTCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCAC < SRR4302533.5313049/94‑1 (MQ=60)
CCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACA > SRR4302533.2633486/1‑94 (MQ=60)
CCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAA < SRR4302533.1068243/94‑1 (MQ=60)
CCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAA > SRR4302533.390530/1‑94 (MQ=60)
CCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAA > SRR4302533.2668789/1‑94 (MQ=60)
CCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑‑CCCGC‑CCCTTTCACTGCCGGGTTGGCCCACCACAA > SRR4302533.1940372/1‑94 (MQ=60)
ctttggccgttataaaaccCCGCCGTTAACTCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAG < SRR4302533.2414869/75‑1 (MQ=60)
CGTTTGCCGTGATCAAACCCCGCCGTTACAGCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAG < SRR4302533.3939490/94‑1 (MQ=60)
CGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAG < SRR4302533.4045061/94‑1 (MQ=60)
CGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAG > SRR4302533.104286/1‑94 (MQ=60)
CGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAG > SRR4302533.2781639/1‑94 (MQ=60)
TTTGCCGTGATCAAACCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAA < SRR4302533.2381260/94‑1 (MQ=60)
TGCCGTGATCAAACCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAAT < SRR4302533.5251220/94‑1 (MQ=60)
GCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATG > SRR4302533.2618577/1‑94 (MQ=60)
GCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATG < SRR4302533.340735/94‑1 (MQ=60)
CCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGA > SRR4302533.471387/1‑94 (MQ=60)
CCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGA > SRR4302533.6166165/1‑94 (MQ=60)
CCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGA < SRR4302533.5245463/94‑1 (MQ=60)
CGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGAC < SRR4302533.2990627/94‑1 (MQ=60)
CGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGAC < SRR4302533.3462512/94‑1 (MQ=60)
GTGATCAAACCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACG < SRR4302533.5702801/94‑1 (MQ=60)
GTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACG < SRR4302533.5796528/94‑1 (MQ=60)
GTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACG < SRR4302533.3418082/94‑1 (MQ=60)
GTAATCAAACCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACG < SRR4302533.5598465/94‑1 (MQ=60)
TGATCAACCACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGC < SRR4302533.3743115/94‑1 (MQ=60)
TGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGC > SRR4302533.5239977/1‑94 (MQ=60)
TGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGC > SRR4302533.1889445/1‑94 (MQ=60)
TGATCAAACACCGCCGTTACATACGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCATTCACTCCCGGGCTGGCCCACCACAAGAAATGACGG > SRR4302533.1715426/1‑94 (MQ=60)
gataaacccCCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCG < SRR4302533.5472514/85‑1 (MQ=60)
TATCAAACACCGCCGTTACATCCGGCGGGAAAACGCTCTTATGCCCT‑T‑‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGG > SRR4302533.4871085/1‑94 (MQ=60)
GATCAACCCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCG < SRR4302533.3679198/94‑1 (MQ=60)
GATCAACCCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCG < SRR4302533.1377989/94‑1 (MQ=60)
GATCAAACCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCG < SRR4302533.2703002/94‑1 (MQ=60)
GATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCG > SRR4302533.1686327/1‑94 (MQ=60)
GATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCG > SRR4302533.4018256/1‑94 (MQ=60)
ATCAAACCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGG < SRR4302533.2100310/94‑1 (MQ=60)
TCAACCCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGC < SRR4302533.2562142/94‑1 (MQ=60)
TCAACCACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGC < SRR4302533.2647730/94‑1 (MQ=60)
TCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGC < SRR4302533.5333153/94‑1 (MQ=60)
AAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCG < SRR4302533.641199/94‑1 (MQ=60)
AACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTG > SRR4302533.2056419/1‑94 (MQ=60)
ACACCGCCGTTACATCCGGCGGTAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGG < SRR4302533.5593005/94‑1 (MQ=60)
ACACCGCCGTTACACCGGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGG < SRR4302533.5656321/94‑1 (MQ=60)
CCCGCCGTTGCATCGGGCGGGAAGACGCTCTGATGCCCTAC‑‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCG < SRR4302533.953902/94‑1 (MQ=60)
CCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCC > SRR4302533.1710055/1‑94 (MQ=60)
CCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCC > SRR4302533.2019983/1‑94 (MQ=60)
cgntnnncnCGNCNGGAAGNCNNNCTGNTGNCCT‑T‑‑CCC‑CNCCNTTTCANTGCCNGGNTGGCCCACCACNAGNAATGACGCGGCGTGGCGTTCCC < SRR4302533.2076690/85‑1 (MQ=58)
CGTTACATCCGGCGGGAAGACGCTCTGATGCCCTGC‑‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCC < SRR4302533.184022/94‑1 (MQ=60)
CGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCC > SRR4302533.4668265/1‑94 (MQ=60)
CGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCC > SRR4302533.6278336/1‑94 (MQ=60)
CGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCC > SRR4302533.3946210/1‑94 (MQ=60)
CGTCACAGCCGGCGGGAAGACGCTCTGATCCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCC < SRR4302533.1117047/94‑1 (MQ=60)
GTTACATCCGGCGGGAAGACGCTCTGATGCCCTCC‑‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCG > SRR4302533.6259756/1‑94 (MQ=60)
ACATCCGGCGGAAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTA < SRR4302533.408527/94‑1 (MQ=60)
CATCCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTAT > SRR4302533.3757286/1‑94 (MQ=60)
CCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGA > SRR4302533.1557104/1‑94 (MQ=60)
CCGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGA > SRR4302533.2368507/1‑94 (MQ=60)
CGGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGAC < SRR4302533.5484494/94‑1 (MQ=60)
CGGCGGAAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGAC < SRR4302533.4223056/94‑1 (MQ=60)
GGCGGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACG < SRR4302533.2268682/94‑1 (MQ=60)
GGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGG > SRR4302533.6079746/1‑94 (MQ=60)
GGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGG > SRR4302533.5583447/1‑94 (MQ=60)
GGGAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGG < SRR4302533.3262765/94‑1 (MQ=60)
GGGAAGACGCTCTGA‑GCCCC‑TCCCCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGG < SRR4302533.116234/94‑1 (MQ=60)
GAAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCT < SRR4302533.4175754/94‑1 (MQ=60)
AAGACGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTG < SRR4302533.629181/94‑1 (MQ=60)
AGACGCTCTGATGCCCTGC‑‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGG < SRR4302533.315435/94‑1 (MQ=60)
ACGCTCTGATGCCCTCC‑‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCG < SRR4302533.1520757/94‑1 (MQ=60)
CGCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGA > SRR4302533.1493511/1‑94 (MQ=60)
GCTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGAT > SRR4302533.2234894/1‑94 (MQ=60)
CTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATT > SRR4302533.2804301/1‑94 (MQ=60)
CTCTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATT < SRR4302533.4145949/94‑1 (MQ=60)
ctTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTT < SRR4302533.3773225/92‑1 (MQ=60)
CTGATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTC < SRR4302533.1077843/94‑1 (MQ=60)
GATGCCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCA > SRR4302533.5125275/1‑94 (MQ=60)
CCCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGGTCCCGTTATAGACGCGGCTGGCGATTTGCAGCGC > SRR4302533.2473844/1‑94 (MQ=60)
CCT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGAGCC > SRR4302533.3508271/1‑94 (MQ=60)
CT‑TC‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCG < SRR4302533.5614197/94‑1 (MQ=60)
ttcCCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGC > SRR4302533.2267116/4‑94 (MQ=60)
C‑‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCC < SRR4302533.3169124/94‑1 (MQ=60)
C‑‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCATGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCC > SRR4302533.5532141/1‑94 (MQ=60)
CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCG > SRR4302533.3258908/1‑94 (MQ=60)
CC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGG > SRR4302533.768110/1‑94 (MQ=60)
C‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGT > SRR4302533.2019633/1‑94 (MQ=60)
C‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGT > SRR4302533.3487558/1‑94 (MQ=60)
C‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGT < SRR4302533.3390025/94‑1 (MQ=60)
C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTC > SRR4302533.212835/1‑94 (MQ=60)
CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCA > SRR4302533.204730/1‑94 (MQ=60)
CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCA > SRR4302533.838799/1‑94 (MQ=60)
CCCTTTCACTGCCGGGTTGACCCACCCCAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGGCGCTGGCGATTTCCAGCGCCGCCCGGTCA < SRR4302533.688025/94‑1 (MQ=60)
CCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAG < SRR4302533.484040/94‑1 (MQ=60)
CTTTCACTGCCGGGTTGGCCCACCACAAGGAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGAGATTTCCAGCGCCGCCCGGTCAGG > SRR4302533.5210408/1‑94 (MQ=60)
CTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGG > SRR4302533.5088239/1‑94 (MQ=60)
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CGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑‑CCC‑C‑CCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGG > NC_000913/2680084‑2680270
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
