Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,699,813	T→C	E226G (GAA→GGA)	recO ←	RecO

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,699,813	0	T	C	100.0%	780.3 / NA	238	E226G (GAA→GGA)	recO	RecO
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (137/101); total (137/101)

Only 100 of 245 total aligned reads displayed.

GTTGACGCCTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTTCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGCGTCAGG  >  NC_000913/2699723‑2699901

 ttGACGCCTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTcccc                                                                                       <  1:2089963/93‑1 (MQ=255)

  tGACGCCTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCt                                                                                      <  1:4382934/93‑1 (MQ=255)

    aCGCCTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGc                                                                                    >  1:2135699/1‑93 (MQ=255)

     cGCCTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGct                                                                                   >  1:5869212/1‑93 (MQ=255)

      cccTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGctc                                                                                  <  2:5066725/92‑1 (MQ=255)

       ccTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGctct                                                                                 <  2:2865684/93‑1 (MQ=255)

       ccTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGctct                                                                                 <  1:3349684/93‑1 (MQ=255)

        cTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCtt                                                                                >  2:1454008/1‑93 (MQ=255)

         tAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCttt                                                                               >  1:3408227/1‑93 (MQ=255)

         tAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCttt                                                                               >  2:4460393/1‑93 (MQ=255)

          aaCAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTa                                                                              >  1:3648560/1‑93 (MQ=255)

           aCAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTaa                                                                             >  2:2514807/1‑93 (MQ=255)

             aGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGGCGGAACAGTCCCCTGCTCTTTAAAg                                                                           >  1:5709179/1‑93 (MQ=255)

             aGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAg                                                                           >  2:4108615/1‑93 (MQ=255)

             aGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAg                                                                           <  2:5769454/93‑1 (MQ=255)

              gTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAgg                                                                          <  2:3456440/93‑1 (MQ=255)

              gTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAgg                                                                          <  1:5409084/93‑1 (MQ=255)

              gTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAgg                                                                          <  1:4162953/93‑1 (MQ=255)

                aaTTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGtt                                                                        >  2:4170991/1‑93 (MQ=255)

                aaTTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGtt                                                                        <  1:4858699/93‑1 (MQ=255)

                aaTTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGtt                                                                        <  2:5988990/93‑1 (MQ=255)

                  ttCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTa                                                                      >  1:1678098/1‑93 (MQ=255)

                   tCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTAc                                                                     <  2:5236195/93‑1 (MQ=255)

                    cAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTAcc                                                                    <  1:6052507/93‑1 (MQ=255)

                    cAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTAcc                                                                    <  1:4737028/93‑1 (MQ=255)

                     aGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCg                                                                   >  1:2585877/1‑93 (MQ=255)

                      gCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGc                                                                  >  2:887768/1‑93 (MQ=255)

                         aTGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCaa                                                               <  1:4682080/93‑1 (MQ=255)

                         aTGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCaa                                                               <  2:5974344/93‑1 (MQ=255)

                         aTGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCaa                                                               >  2:2904826/1‑93 (MQ=255)

                         aTGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCaa                                                               >  2:1931425/1‑93 (MQ=255)

                         aTGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGGTTACCGCCaa                                                               >  2:2370008/1‑93 (MQ=255)

                          tGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAg                                                              <  1:4080036/93‑1 (MQ=255)

                             cAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATa                                                           <  2:6218422/93‑1 (MQ=255)

                             cAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATa                                                           <  2:298324/93‑1 (MQ=255)

                             cAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATa                                                           <  2:4882046/93‑1 (MQ=255)

                               aTCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACg                                                         <  1:786207/93‑1 (MQ=255)

                               aTCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACg                                                         >  1:3542602/1‑93 (MQ=255)

                                accTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACgg                                                        <  2:1335100/92‑1 (MQ=255)

                                 ccTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGc                                                       >  1:4773461/1‑93 (MQ=255)

                                 ccTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGc                                                       <  2:137802/93‑1 (MQ=255)

                                  cTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCt                                                      >  1:1238419/1‑93 (MQ=255)

                                  cTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCt                                                      >  1:5317077/1‑93 (MQ=255)

                                    catcatTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTa                                                    >  2:2652403/1‑93 (MQ=255)

                                     atcatTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTaa                                                   <  2:565953/93‑1 (MQ=255)

                                     atcatTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTaa                                                   >  2:559781/1‑93 (MQ=255)

                                       cattcatAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAgc                                                 >  2:3070081/1‑93 (MQ=255)

                                          tcatAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGcc                                              >  1:5946390/1‑93 (MQ=255)

                                          tcatAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGcc                                              >  1:462633/1‑93 (MQ=255)

                                            atAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCAt                                            >  2:2224659/1‑93 (MQ=255)

                                             tAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATg                                           >  2:5937139/1‑93 (MQ=255)

                                             tAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATg                                           <  2:5468491/93‑1 (MQ=255)

                                              aaTGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGc                                          >  2:3168911/1‑93 (MQ=255)

                                              aaTGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGc                                          <  2:2939855/93‑1 (MQ=255)

                                              aaTGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGc                                          <  1:3602607/93‑1 (MQ=255)

                                                 gtgtTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCggg                                       >  2:1264699/1‑93 (MQ=255)

                                                   gtTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTa                                     <  2:1774069/93‑1 (MQ=255)

                                                   gtTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTa                                     <  2:1215230/93‑1 (MQ=255)

                                                    ttttCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTaa                                    >  2:4994528/1‑93 (MQ=255)

                                                    ttttCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTaa                                    >  2:646294/1‑93 (MQ=255)

                                                     tttCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTaaa                                   >  1:4027967/1‑93 (MQ=255)

                                                       tCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGTGCCATGCGGGTAAAGc                                 >  1:654569/1‑93 (MQ=255)

                                                       tCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGc                                 >  1:321624/1‑93 (MQ=255)

                                                         aCCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGt                               >  2:3058152/1‑93 (MQ=255)

                                                         aCCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGt                               <  1:2676273/93‑1 (MQ=255)

                                                         aCCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGCGTaaaagat                               >  1:245694/1‑89 (MQ=255)

                                                          ccGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGtt                              <  1:5804171/93‑1 (MQ=255)

                                                           cGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGttt                             <  2:474504/93‑1 (MQ=255)

                                                                 cTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCgcggc                       >  1:136951/1‑93 (MQ=255)

                                                                  ttAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCgcggcg                      >  1:1121559/1‑93 (MQ=255)

                                                                    aGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGgcgcg                    >  2:5271688/1‑93 (MQ=255)

                                                                       cATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAg                 >  1:688739/1‑93 (MQ=255)

                                                                       cATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAg                 >  2:1652797/1‑93 (MQ=255)

                                                                       cATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAg                 >  1:2884292/1‑93 (MQ=255)

                                                                        aTAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAgt                <  1:3815405/93‑1 (MQ=255)

                                                                        aTAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAgt                >  2:53151/1‑93 (MQ=255)

                                                                        aTAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAgt                >  1:5046827/1‑93 (MQ=255)

                                                                         tAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAgtg               >  2:3591229/1‑93 (MQ=255)

                                                                         tAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAgtg               <  2:732297/93‑1 (MQ=255)

                                                                         tAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAgtg               >  2:1576432/1‑93 (MQ=255)

                                                                         tAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGAGTTTCGCGGCGCGCAgtg               >  2:4700884/1‑93 (MQ=255)

                                                                           aaCTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAgtgtg             >  1:914894/1‑93 (MQ=255)

                                                                            aCTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAgtgtgt            >  2:4400806/1‑93 (MQ=255)

                                                                            aCTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAgtgtgt            <  1:5577087/93‑1 (MQ=255)

                                                                             cTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCACGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTc           >  1:6203836/1‑93 (MQ=255)

                                                                             cTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTc           <  1:5513558/93‑1 (MQ=255)

                                                                             cTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTc           <  1:5080310/93‑1 (MQ=255)

                                                                             cTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTc           >  1:5762738/1‑93 (MQ=255)

                                                                             cTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTc           <  1:298466/93‑1 (MQ=255)

                                                                               gCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTg         <  2:1528276/93‑1 (MQ=255)

                                                                               gCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTg         <  2:4278014/93‑1 (MQ=255)

                                                                               gCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTg         >  1:1578851/1‑93 (MQ=255)

                                                                                ccGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGc        <  2:4267835/93‑1 (MQ=255)

                                                                                ccGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGc        <  2:3655666/93‑1 (MQ=255)

                                                                                 cGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGCg       <  1:3153936/93‑1 (MQ=255)

                                                                                   gAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGCGTc     >  2:3916078/1‑93 (MQ=255)

                                                                                   gAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGCGTc     <  1:1702329/93‑1 (MQ=255)

                                                                                    aaCAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGCGTCa    <  1:3055130/93‑1 (MQ=255)

                                                                                     aCAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGCGTCAg   >  1:1605295/1‑93 (MQ=255)

                                                                                     aCAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGCGTCAg   <  2:3731769/93‑1 (MQ=255)

GTTGACGCCTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTTCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGCGTCAGG  >  NC_000913/2699723‑2699901

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AATGTTGACGCCTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTTCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGCGTCAGGAAATT  >  NC_000913/2699720‑2699906

AATGTTGACGCCTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTC                                                                                               <  SRR4302533.619017/94‑1 (MQ=60)

AATGTTGACGCCTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTC                                                                                               >  SRR4302533.3445561/1‑94 (MQ=60)

 ATGTTGACGCCTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCC                                                                                              >  SRR4302533.4279782/1‑94 (MQ=60)

 ATGTTGACGCCTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCC                                                                                              >  SRR4302533.5903169/1‑94 (MQ=60)

 ATGTTGACGCCTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCC                                                                                              <  SRR4302533.4125126/94‑1 (MQ=60)

 ATGTTGACGCCTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCC                                                                                              <  SRR4302533.3970754/94‑1 (MQ=60)

   GTTGACGCCTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCC                                                                                            <  SRR4302533.4851582/94‑1 (MQ=60)

    TTGACGCCTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCT                                                                                           <  SRR4302533.2102833/94‑1 (MQ=60)

     TGACGCCTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTG                                                                                          >  SRR4302533.6175193/1‑94 (MQ=60)

     TGACGCCTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTG                                                                                          >  SRR4302533.684530/1‑94 (MQ=60)

     TGACGCCTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTG                                                                                          <  SRR4302533.4409394/94‑1 (MQ=60)

      GACGCCTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGC                                                                                         >  SRR4302533.2148866/1‑94 (MQ=60)

       ACGCCTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCT                                                                                        >  SRR4302533.5904686/1‑94 (MQ=60)

        CGCCTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTC                                                                                       <  SRR4302533.1512874/94‑1 (MQ=60)

         GCTTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCT                                                                                      <  SRR4302533.1996395/94‑1 (MQ=60)

         GCCTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCT                                                                                      >  SRR4302533.640043/1‑94 (MQ=60)

          CCTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTT                                                                                     <  SRR4302533.3370378/94‑1 (MQ=60)

          CCTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTT                                                                                     >  SRR4302533.4694063/1‑94 (MQ=60)

          CCTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTT                                                                                     <  SRR4302533.6060503/94‑1 (MQ=60)

           CTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTT                                                                                    >  SRR4302533.3429283/1‑94 (MQ=60)

           CTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTT                                                                                    <  SRR4302533.5921003/94‑1 (MQ=60)

           CTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTT                                                                                    >  SRR4302533.2547755/1‑94 (MQ=60)

           CTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTT                                                                                    >  SRR4302533.1604987/1‑94 (MQ=60)

           CTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTT                                                                                    >  SRR4302533.4167705/1‑94 (MQ=60)

            TAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTA                                                                                   >  SRR4302533.3670994/1‑94 (MQ=60)

             AACAGTAATTCAGCCATGACAATCCTCATCATTCATATTGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAA                                                                                  <  SRR4302533.3325776/94‑1 (MQ=60)

              ACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAA                                                                                 >  SRR4302533.894136/1‑94 (MQ=60)

              ACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAA                                                                                 >  SRR4302533.4744755/1‑94 (MQ=60)

               CAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGGCGGAACAGTCCCCTGCTCTTTAAAG                                                                                >  SRR4302533.5743663/1‑94 (MQ=60)

                AGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGG                                                                               >  SRR4302533.319943/1‑94 (MQ=60)

                 GTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGT                                                                              >  SRR4302533.3662414/1‑94 (MQ=60)

                 GTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGT                                                                              <  SRR4302533.5441597/94‑1 (MQ=60)

                 GTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGT                                                                              <  SRR4302533.4188175/94‑1 (MQ=60)

                   AATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTT                                                                            <  SRR4302533.4888148/94‑1 (MQ=60)

                    ATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTA                                                                           >  SRR4302533.1681255/1‑94 (MQ=60)

                    ATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTA                                                                           >  SRR4302533.4890911/1‑94 (MQ=60)

                    ATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTA                                                                           >  SRR4302533.1688262/1‑94 (MQ=60)

                      TCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACC                                                                         >  SRR4302533.5774258/1‑94 (MQ=60)

                      TCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACC                                                                         <  SRR4302533.3174291/94‑1 (MQ=60)

                       CAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCG                                                                        <  SRR4302533.5684337/94‑1 (MQ=60)

                       CAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCG                                                                        <  SRR4302533.6089166/94‑1 (MQ=60)

                       CAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCG                                                                        >  SRR4302533.2601775/1‑94 (MQ=60)

                       CAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCG                                                                        <  SRR4302533.4765751/94‑1 (MQ=60)

                        AGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGC                                                                       >  SRR4302533.402644/1‑94 (MQ=60)

                         GCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCC                                                                      <  SRR4302533.3592131/94‑1 (MQ=60)

                          CCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCA                                                                     >  SRR4302533.5595121/1‑94 (MQ=60)

                           CATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAA                                                                    >  SRR4302533.5188051/1‑94 (MQ=60)

                            ATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAG                                                                   <  SRR4302533.4710450/94‑1 (MQ=60)

                             TGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGA                                                                  <  SRR4302533.4104873/94‑1 (MQ=60)

                                 AATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACG                                                              >  SRR4302533.3564435/1‑94 (MQ=60)

                                  ATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGG                                                             >  SRR4302533.2120111/1‑94 (MQ=60)

                                  ATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGG                                                             <  SRR4302533.790827/94‑1 (MQ=60)

                                   TCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGC                                                            >  SRR4302533.1636992/1‑94 (MQ=60)

                                   TCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGC                                                            <  SRR4302533.5810000/94‑1 (MQ=60)

                                   TCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGC                                                            >  SRR4302533.4802385/1‑94 (MQ=60)

                                    CCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCT                                                           >  SRR4302533.5348942/1‑94 (MQ=60)

                                    CCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCT                                                           >  SRR4302533.1245819/1‑94 (MQ=60)

                                     CTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTT                                                          >  SRR4302533.4377166/1‑94 (MQ=60)

                                     CTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTT                                                          >  SRR4302533.6279847/1‑94 (MQ=60)

                                        ATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAG                                                       >  SRR4302533.3412535/1‑94 (MQ=60)

                                           ATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGC                                                    >  SRR4302533.4433774/1‑94 (MQ=60)

                                           ATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGC                                                    >  SRR4302533.2949006/1‑94 (MQ=60)

                                            TTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCC                                                   >  SRR4302533.465391/1‑94 (MQ=60)

                                            TTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCC                                                   >  SRR4302533.5982353/1‑94 (MQ=60)

                                            TTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCC                                                   >  SRR4302533.5982352/1‑94 (MQ=60)

                                              CATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCAT                                                 >  SRR4302533.3037738/1‑94 (MQ=60)

                                              CATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCAT                                                 >  SRR4302533.301447/1‑94 (MQ=60)

                                               ATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATG                                                <  SRR4302533.5498580/94‑1 (MQ=60)

                                               ATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATG                                                >  SRR4302533.3589180/1‑94 (MQ=60)

                                               ATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATG                                                <  SRR4302533.2002317/94‑1 (MQ=60)

                                                TAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGC                                               >  SRR4302533.5037303/1‑94 (MQ=60)

                                                TAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGC                                               <  SRR4302533.280039/94‑1 (MQ=60)

                                                TAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGC                                               >  SRR4302533.4766496/1‑94 (MQ=60)

                                                 AATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCG                                              <  SRR4302533.3624779/94‑1 (MQ=60)

                                                   TGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGG                                            >  SRR4302533.2361302/1‑94 (MQ=60)

                                                   TGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGG                                            <  SRR4302533.3146303/94‑1 (MQ=60)

                                                    GTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGT                                           <  SRR4302533.730843/94‑1 (MQ=60)

                                                       TTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAA                                        >  SRR4302533.4052485/1‑94 (MQ=60)

                                                         TTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGTGCCATGCGGGTAAAGC                                      >  SRR4302533.658434/1‑94 (MQ=60)

                                                         TTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGC                                      <  SRR4302533.263744/94‑1 (MQ=60)

                                                         TTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGC                                      >  SRR4302533.323590/1‑94 (MQ=60)

                                                           CACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGCGTAAAagat                                    >  SRR4302533.247215/1‑90 (MQ=60)

                                                            ACCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTT                                   <  SRR4302533.2692685/94‑1 (MQ=60)

                                                             CCGTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTT                                  <  SRR4302533.5839225/94‑1 (MQ=60)

                                                               GTTCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCG                                >  SRR4302533.5823288/1‑94 (MQ=60)

                                                                 TCGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGCTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGCAAAGCGCTTCGCG                              >  SRR4302533.3890760/1‑94 (MQ=60)

                                                                  CGCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGG                             <  SRR4302533.2379052/94‑1 (MQ=60)

                                                                   GCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGC                            >  SRR4302533.5454027/1‑94 (MQ=60)

                                                                   GCTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGC                            >  SRR4302533.137817/1‑94 (MQ=60)

                                                                    CTTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCG                           >  SRR4302533.1128213/1‑94 (MQ=60)

                                                                     TTAGGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTGACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGC                          >  SRR4302533.3403423/1‑94 (MQ=60)

                                                                        GGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCA                       >  SRR4302533.5219442/1‑94 (MQ=60)

                                                                        GGCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCA                       >  SRR4302533.5087697/1‑94 (MQ=60)

                                                                         GCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAG                      >  SRR4302533.2902028/1‑94 (MQ=60)

                                                                         GCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAG                      >  SRR4302533.692810/1‑94 (MQ=60)

                                                                         GCATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAG                      >  SRR4302533.3837571/1‑94 (MQ=60)

                                                                          CATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGT                     >  SRR4302533.5077356/1‑94 (MQ=60)

                                                                          CATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGG                     >  SRR4302533.1705380/1‑94 (MQ=60)

                                                                           ATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTG                    <  SRR4302533.345370/94‑1 (MQ=60)

                                                                           ATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTG                    >  SRR4302533.4576913/1‑94 (MQ=60)

                                                                           ATAAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTG                    <  SRR4302533.3838735/94‑1 (MQ=60)

                                                                             AAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTG                  >  SRR4302533.920272/1‑94 (MQ=60)

                                                                             AAACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTG                  >  SRR4302533.4753663/1‑94 (MQ=60)

                                                                               ACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCACGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTC                >  SRR4302533.6241041/1‑94 (MQ=60)

                                                                               ACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTC                >  SRR4302533.5797517/1‑94 (MQ=60)

                                                                               ACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTC                <  SRR4302533.5610792/94‑1 (MQ=60)

                                                                               ACTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTC                >  SRR4302533.2803370/1‑94 (MQ=60)

                                                                                CTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCT               <  SRR4302533.5546841/94‑1 (MQ=60)

                                                                                CTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCT               <  SRR4302533.5111016/94‑1 (MQ=60)

                                                                                CTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCT               <  SRR4302533.300292/94‑1 (MQ=60)

                                                                                CTGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCT               <  SRR4302533.1252261/94‑1 (MQ=60)

                                                                                 TGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTG              >  SRR4302533.1588360/1‑94 (MQ=60)

                                                                                 TGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTG              <  SRR4302533.5873715/94‑1 (MQ=60)

                                                                                 TGCCGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTG              >  SRR4302533.4060756/1‑94 (MQ=60)

                                                                                    CGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGCGT           <  SRR4302533.3173325/94‑1 (MQ=60)

                                                                                    CGGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGCGT           >  SRR4302533.5655857/1‑94 (MQ=60)

                                                                                     GGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGCGTC          <  SRR4302533.1151791/94‑1 (MQ=60)

                                                                                     GGAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGCGTC          >  SRR4302533.143620/1‑94 (MQ=60)

                                                                                      GAACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGCGTCA         <  SRR4302533.1712644/94‑1 (MQ=60)

                                                                                       AACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGCGTCAG        <  SRR4302533.3073857/94‑1 (MQ=60)

                                                                                       AACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGCGTCAG        >  SRR4302533.1615013/1‑94 (MQ=60)

                                                                                        ACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGCGTCAGG       <  SRR4302533.4123059/94‑1 (MQ=60)

                                                                                        ACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGCGTCAGG       <  SRR4302533.768/94‑1 (MQ=60)

                                                                                        ACAGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGCGTCAGG       >  SRR4302533.5368931/1‑94 (MQ=60)

                                                                                          AGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGCGTCAGGAA     >  SRR4302533.1149815/1‑94 (MQ=60)

                                                                                          AGTCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGCGTCAGGAA     >  SRR4302533.3034337/1‑94 (MQ=60)

                                                                                            TCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGCGTCAGGAAAT   <  SRR4302533.802737/94‑1 (MQ=60)

                                                                                            TCCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGCGTCAGGAAAT   >  SRR4302533.6167801/1‑94 (MQ=60)

                                                                                             CCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGCGTCAGGAAATT  >  SRR4302533.1817938/1‑94 (MQ=60)

                                                                                             CCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGCGTCAGGAAATT  <  SRR4302533.5321677/94‑1 (MQ=60)

AATGTTGACGCCTAACAGTAATTCAGCCATGACAATCCTCATCATTCATAATGTGTTTTCACCGTTCGCTTAGGCATAAACTGCCGGAACAGTTCCCTGCTCTTTAAAGGTTTACCGCCAAGATACGGCTTAAGCGCCATGCGGGTAAAGCGTTTCGCGGCGCGCAGTGTGTCTGCGTCAGGAAATT  >  NC_000913/2699720‑2699906

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`