Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,714,049	G→A	intergenic (+19/+37)	yfiK → / ← yfiD	hypothetical protein/putative formate acetyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,714,049	0	G	A	100.0%	970.0 / NA	261	intergenic (+19/+37)	yfiK/yfiD	hypothetical protein/putative formate acetyltransferase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (135/126); total (135/126)

Only 100 of 268 total aligned reads displayed.

CAGTATGGTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGGTCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAG  >  NC_000913/2713959‑2714138

cAGTATGGTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATc                                                                                         >  1:116373/1‑93 (MQ=255)

 aGTATGGTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCg                                                                                        >  2:5329533/1‑93 (MQ=255)

 aGTATGGTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCg                                                                                        >  2:5593091/1‑93 (MQ=255)

 aGTATGGTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCg                                                                                        >  2:5135537/1‑93 (MQ=255)

   tATGGTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGcc                                                                                      <  1:5913203/93‑1 (MQ=255)

    aTGGTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGccc                                                                                     <  2:2375588/93‑1 (MQ=255)

     tGGTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCct                                                                                    <  2:5299922/93‑1 (MQ=255)

       gTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCctct                                                                                  >  1:126586/1‑93 (MQ=255)

       gTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCctct                                                                                  >  1:250229/1‑93 (MQ=255)

         cGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTc                                                                                <  1:1012713/93‑1 (MQ=255)

          gCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTcc                                                                               >  1:4178829/1‑93 (MQ=255)

          gCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTcc                                                                               <  2:4993244/93‑1 (MQ=255)

          gCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTcc                                                                               <  1:5387288/93‑1 (MQ=255)

           ccAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTcag                                                                              >  2:5187078/1‑91 (MQ=255)

             aGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCt                                                                            >  1:2012329/1‑93 (MQ=255)

             aGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCt                                                                            >  1:373594/1‑93 (MQ=255)

                tAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAg                                                                         <  1:1645440/93‑1 (MQ=255)

                 aaaTATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGt                                                                        <  2:1873509/93‑1 (MQ=255)

                  aaTATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTa                                                                       >  1:18238/1‑93 (MQ=255)

                   atatCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTaa                                                                      >  1:5951762/1‑93 (MQ=255)

                    tatCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAAc                                                                     >  1:4726336/1‑93 (MQ=255)

                      tCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACtt                                                                   >  2:4459709/1‑93 (MQ=255)

                         tGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCt                                                                >  2:1363226/1‑93 (MQ=255)

                          gCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTa                                                               >  2:6280639/1‑93 (MQ=255)

                          gCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTa                                                               <  1:2114657/93‑1 (MQ=255)

                           cTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTAc                                                              <  2:3081814/93‑1 (MQ=255)

                           cTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTAc                                                              >  2:484698/1‑93 (MQ=255)

                            ttGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACt                                                             >  1:1594225/1‑93 (MQ=255)

                             tGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACtt                                                            <  1:6209405/93‑1 (MQ=255)

                              gCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTa                                                           <  2:1193249/93‑1 (MQ=255)

                                ccTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAg                                                         <  2:5582646/93‑1 (MQ=255)

                                 cTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGc                                                        >  1:5592008/1‑93 (MQ=255)

                                   gTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGGAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCt                                                      <  1:3388846/93‑1 (MQ=255)

                                   gTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCt                                                      >  2:4743226/1‑93 (MQ=255)

                                   gTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCt                                                      <  1:4596132/93‑1 (MQ=255)

                                    ttGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCtt                                                     >  1:6060045/1‑93 (MQ=255)

                                    ttGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCtt                                                     >  2:4503135/1‑93 (MQ=255)

                                      gCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTAc                                                   <  2:4900331/93‑1 (MQ=255)

                                       cTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACa                                                  <  1:4941385/93‑1 (MQ=255)

                                        tGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAg                                                 <  2:5262143/93‑1 (MQ=255)

                                         tgTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGTCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAgg                                                <  1:4549467/92‑1 (MQ=255)

                                         ggTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAgg                                                >  1:5026030/1‑93 (MQ=255)

                                         ggTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAgg                                                >  2:5767195/1‑93 (MQ=255)

                                          gTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGc                                               >  2:2066726/1‑93 (MQ=255)

                                          gTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGc                                               >  2:1741767/1‑93 (MQ=255)

                                          gTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGc                                               >  2:2467379/1‑93 (MQ=255)

                                          gTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGc                                               >  2:2804357/1‑93 (MQ=255)

                                          gTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGc                                               <  2:955759/93‑1 (MQ=255)

                                            cTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCtt                                             <  2:5897847/93‑1 (MQ=255)

                                             tATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCttt                                            >  1:1769718/1‑93 (MQ=255)

                                             tATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCttt                                            >  2:5686015/1‑93 (MQ=255)

                                             tATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCttt                                            >  1:876063/1‑93 (MQ=255)

                                             tATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCttt                                            >  2:4202735/1‑93 (MQ=255)

                                              aTTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTc                                           <  1:6095736/93‑1 (MQ=255)

                                              aTTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTc                                           <  2:115486/93‑1 (MQ=255)

                                               ttGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCa                                          >  2:3419924/1‑93 (MQ=255)

                                               ttGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCa                                          <  2:3563193/93‑1 (MQ=255)

                                               ttGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCa                                          <  1:3092037/93‑1 (MQ=255)

                                                   gcgGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTaa                                      >  2:1576646/1‑93 (MQ=255)

                                                     ggTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAg                                    <  1:4991205/93‑1 (MQ=255)

                                                      gTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAgg                                   <  2:3072083/93‑1 (MQ=255)

                                                       tACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGt                                  <  1:2964487/93‑1 (MQ=255)

                                                       tACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGt                                  <  1:148357/93‑1 (MQ=255)

                                                       tACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGt                                  >  1:1661769/1‑93 (MQ=255)

                                                       tACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGt                                  >  2:2601155/1‑93 (MQ=255)

                                                       tACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGt                                  >  1:2668376/1‑93 (MQ=255)

                                                        aCGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTa                                 <  1:4294203/93‑1 (MQ=255)

                                                          gCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACg                               >  2:1771521/1‑93 (MQ=255)

                                                           cATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGa                              <  2:2541894/93‑1 (MQ=255)

                                                           cATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGa                              <  1:5283240/93‑1 (MQ=255)

                                                            aTTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAg                             <  2:5466188/93‑1 (MQ=255)

                                                            aTTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAg                             <  1:5318909/93‑1 (MQ=255)

                                                             ttttCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGc                            >  2:2905979/1‑93 (MQ=255)

                                                             ttttCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGc                            <  1:1238219/93‑1 (MQ=255)

                                                              tttCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCg                           <  1:5574246/93‑1 (MQ=255)

                                                                tCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGAt                         <  1:3588465/93‑1 (MQ=255)

                                                                tCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGAt                         >  1:3945956/1‑93 (MQ=255)

                                                                 cTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGGACGAGCGATa                        >  2:1968080/1‑93 (MQ=255)

                                                                  tATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATaa                       >  2:825500/1‑93 (MQ=255)

                                                                   aTTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAAc                      <  1:1024709/93‑1 (MQ=255)

                                                                    ttAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACg                     >  1:3190587/1‑93 (MQ=255)

                                                                    ttAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACg                     <  1:3727471/93‑1 (MQ=255)

                                                                    ttAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACg                     >  1:5105335/1‑93 (MQ=255)

                                                                     tAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGt                    <  1:3498833/93‑1 (MQ=255)

                                                                       aCGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTcg                  >  1:3847280/1‑93 (MQ=255)

                                                                        cGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTcgc                 <  1:2067974/93‑1 (MQ=255)

                                                                          aaaaaaaGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCgcgc               <  1:4577190/93‑1 (MQ=255)

                                                                           aaaaaaGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCgct              <  2:1919377/93‑1 (MQ=255)

                                                                            aaaaaGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCgctg             >  2:4114744/1‑93 (MQ=255)

                                                                            aaaaaGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCgctg             >  2:4127429/1‑93 (MQ=255)

                                                                              aaaGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCgctgct           <  2:3786208/93‑1 (MQ=255)

                                                                              aaaGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCgctgct           <  1:1698992/93‑1 (MQ=255)

                                                                               aaGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTAAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGctgctg          >  1:3392345/1‑93 (MQ=255)

                                                                                   ggAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTcc      <  2:6023580/93‑1 (MQ=255)

                                                                                   ggAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTACAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTcc      <  2:2976459/93‑1 (MQ=255)

                                                                                    gAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCg     >  1:6305158/1‑93 (MQ=255)

                                                                                      agagATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGa   <  1:403569/93‑1 (MQ=255)

                                                                                      agagATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGa   <  1:2790127/93‑1 (MQ=255)

                                                                                       gagaTCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAg  <  2:3923053/93‑1 (MQ=255)

                                                                                       gagaTCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAg  >  2:6062198/1‑93 (MQ=255)

CAGTATGGTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGGTCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAG  >  NC_000913/2713959‑2714138

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCCAGTATGGTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGGTCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAG  >  NC_000913/2713956‑2714142

CGCCAGTATGGTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGA                                                                                               <  SRR4302533.2418185/94‑1 (MQ=60)

CGCCAGTATGGTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGA                                                                                               >  SRR4302533.4935802/1‑94 (MQ=60)

CGCCAGTATGGTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGA                                                                                               >  SRR4302533.5249757/1‑94 (MQ=60)

CGCCAGTATGGTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGA                                                                                               <  SRR4302533.1435969/94‑1 (MQ=60)

 GCCAGTATGGTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGAT                                                                                              <  SRR4302533.2014461/94‑1 (MQ=60)

 GCCAGTATGGTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGAT                                                                                              <  SRR4302533.5936327/94‑1 (MQ=60)

  CCAGTATGGTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATC                                                                                             >  SRR4302533.117114/1‑94 (MQ=60)

  CCAGTATGGTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATC                                                                                             <  SRR4302533.536976/94‑1 (MQ=60)

   CAGTATGGTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCG                                                                                            >  SRR4302533.373266/1‑94 (MQ=60)

    AGTATGGTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGC                                                                                           >  SRR4302533.269087/1‑94 (MQ=60)

      TATGGTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCC                                                                                         <  SRR4302533.5948935/94‑1 (MQ=60)

      TATGGTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCC                                                                                         <  SRR4302533.2121267/94‑1 (MQ=60)

       ATGGTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCT                                                                                        >  SRR4302533.169898/1‑94 (MQ=60)

        TGGTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTC                                                                                       >  SRR4302533.3259707/1‑94 (MQ=60)

         GGTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCT                                                                                      >  SRR4302533.127378/1‑94 (MQ=60)

         GGTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCT                                                                                      >  SRR4302533.251773/1‑94 (MQ=60)

          CTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTT                                                                                     <  SRR4302533.6083972/94‑1 (MQ=60)

            CGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCC                                                                                   <  SRR4302533.3189668/94‑1 (MQ=60)

            CGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCC                                                                                   <  SRR4302533.1665445/94‑1 (MQ=60)

            CGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCC                                                                                   >  SRR4302533.4204143/1‑94 (MQ=60)

            CGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCC                                                                                   <  SRR4302533.1018641/94‑1 (MQ=60)

            CGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCC                                                                                   <  SRR4302533.4599172/94‑1 (MQ=60)

             GCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCG                                                                                  <  SRR4302533.5419657/94‑1 (MQ=60)

             GCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCG                                                                                  <  SRR4302533.2185075/94‑1 (MQ=60)

              CCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGC                                                                                 >  SRR4302533.115386/1‑94 (MQ=60)

               CAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCT                                                                                >  SRR4302533.375852/1‑94 (MQ=60)

               CAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCT                                                                                >  SRR4302533.4123783/1‑94 (MQ=60)

               CAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCT                                                                                >  SRR4302533.2024725/1‑94 (MQ=60)

                 GTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTA                                                                              >  SRR4302533.1021618/1‑94 (MQ=60)

                   TAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGT                                                                            <  SRR4302533.1655403/94‑1 (MQ=60)

                    AAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTA                                                                           >  SRR4302533.18362/1‑94 (MQ=60)

                    AAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTA                                                                           <  SRR4302533.1187153/94‑1 (MQ=60)

                     AATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAA                                                                          >  SRR4302533.1278879/1‑94 (MQ=60)

                     AATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAA                                                                          >  SRR4302533.5987764/1‑94 (MQ=60)

                      ATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAAC                                                                         >  SRR4302533.2948049/1‑94 (MQ=60)

                      ATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAAC                                                                         >  SRR4302533.4754991/1‑94 (MQ=60)

                       TATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACT                                                                        <  SRR4302533.3655894/94‑1 (MQ=60)

                       TATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACT                                                                        <  SRR4302533.1261804/94‑1 (MQ=60)

                        ATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTATCGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTT                                                                       <  SRR4302533.3412566/94‑1 (MQ=60)

                        ATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTT                                                                       <  SRR4302533.1976502/94‑1 (MQ=60)

                        ATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTT                                                                       >  SRR4302533.5013814/1‑94 (MQ=60)

                         TCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTG                                                                      <  SRR4302533.4509653/94‑1 (MQ=60)

                         TCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTG                                                                      <  SRR4302533.860672/94‑1 (MQ=60)

                           GTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCT                                                                    <  SRR4302533.5703258/94‑1 (MQ=60)

                           GTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCT                                                                    >  SRR4302533.2701039/1‑94 (MQ=60)

                           GTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCT                                                                    >  SRR4302533.4611079/1‑94 (MQ=60)

                            TGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTA                                                                   >  SRR4302533.1877250/1‑94 (MQ=60)

                             GCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTAC                                                                  <  SRR4302533.2127699/94‑1 (MQ=60)

                              CTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACT                                                                 >  SRR4302533.2462222/1‑94 (MQ=60)

                              CTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACT                                                                 >  SRR4302533.1603872/1‑94 (MQ=60)

                               TTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTT                                                                >  SRR4302533.398924/1‑94 (MQ=60)

                                TGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTA                                                               <  SRR4302533.6246647/94‑1 (MQ=60)

                                 GCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAA                                                              >  SRR4302533.4249999/1‑94 (MQ=60)

                                  CCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAG                                                             >  SRR4302533.465154/1‑94 (MQ=60)

                                   CCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGC                                                            >  SRR4302533.5625789/1‑94 (MQ=60)

                                   CCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGC                                                            >  SRR4302533.28192/1‑94 (MQ=60)

                                    CTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCC                                                           <  SRR4302533.6122165/94‑1 (MQ=60)

                                    CTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCC                                                           >  SRR4302533.3834889/1‑94 (MQ=60)

                                     TGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCT                                                          <  SRR4302533.3463278/94‑1 (MQ=60)

                                      GTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGGAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTT                                                         <  SRR4302533.3409772/94‑1 (MQ=60)

                                      GTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTT                                                         <  SRR4302533.4623975/94‑1 (MQ=60)

                                      GTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTT                                                         >  SRR4302533.6096732/1‑94 (MQ=60)

                                       TTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTA                                                        <  SRR4302533.4987354/94‑1 (MQ=60)

                                         GCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGCAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACA                                                      >  SRR4302533.5972420/1‑94 (MQ=60)

                                          CTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAG                                                     <  SRR4302533.4971298/94‑1 (MQ=60)

                                           TGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGG                                                    >  SRR4302533.2034195/1‑94 (MQ=60)

                                           TGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGG                                                    <  SRR4302533.1091774/94‑1 (MQ=60)

                                           TGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGG                                                    >  SRR4302533.5056464/1‑94 (MQ=60)

                                            TGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGTCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGC                                                   <  SRR4302533.4577053/94‑1 (MQ=60)

                                            GGTCTATTGCGCGGTACGCCTTTTCTATTAACGAAAAAAAGCGTAAGAGATCGCCCTCTTCCGCTTAGTAACTTGATACTTAAGACTTACAccc                                                   >  SRR4302533.558678/1‑91 (MQ=60)

                                             GTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCT                                                  >  SRR4302533.2107946/1‑94 (MQ=60)

                                             GTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCT                                                  >  SRR4302533.5964140/1‑94 (MQ=60)

                                               CTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTT                                                >  SRR4302533.1780494/1‑94 (MQ=60)

                                               CTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTT                                                >  SRR4302533.881209/1‑94 (MQ=60)

                                                 ATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCA                                              >  SRR4302533.4934058/1‑94 (MQ=60)

                                                 ATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCA                                              <  SRR4302533.6132560/94‑1 (MQ=60)

                                                  TTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAG                                             <  SRR4302533.3111048/94‑1 (MQ=60)

                                                  TTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAG                                             <  SRR4302533.3908410/94‑1 (MQ=60)

                                                       CGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAG                                        <  SRR4302533.3965700/94‑1 (MQ=60)

                                                        GGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGG                                       <  SRR4302533.5021466/94‑1 (MQ=60)

                                                        GGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGG                                       >  SRR4302533.3207648/1‑94 (MQ=60)

                                                         GTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGT                                      >  SRR4302533.1671815/1‑94 (MQ=60)

                                                         GTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGT                                      <  SRR4302533.1601859/94‑1 (MQ=60)

                                                         GTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGT                                      <  SRR4302533.1703244/94‑1 (MQ=60)

                                                         GTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGT                                      >  SRR4302533.2684747/1‑94 (MQ=60)

                                                          TACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTA                                     <  SRR4302533.149306/94‑1 (MQ=60)

                                                          TACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTA                                     <  SRR4302533.2982607/94‑1 (MQ=60)

                                                           ACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTAC                                    <  SRR4302533.4607117/94‑1 (MQ=60)

                                                           ACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTAC                                    >  SRR4302533.92775/1‑94 (MQ=60)

                                                           ACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTAC                                    <  SRR4302533.4320029/94‑1 (MQ=60)

                                                              CATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAG                                 >  SRR4302533.1713996/1‑94 (MQ=60)

                                                              CATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAG                                 <  SRR4302533.5314891/94‑1 (MQ=60)

                                                              CATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAG                                 >  SRR4302533.5385815/1‑94 (MQ=60)

                                                               ATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGC                                >  SRR4302533.6280669/1‑94 (MQ=60)

                                                               ATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGC                                >  SRR4302533.6212085/1‑94 (MQ=60)

                                                               ATTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGC                                <  SRR4302533.5350786/94‑1 (MQ=60)

                                                                TTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCG                               <  SRR4302533.1245617/94‑1 (MQ=60)

                                                                TTTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCG                               <  SRR4302533.1816273/94‑1 (MQ=60)

                                                                 TTTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGA                              <  SRR4302533.5607934/94‑1 (MQ=60)

                                                                  TTCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGAT                             >  SRR4302533.3970020/1‑94 (MQ=60)

                                                                   TCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATA                            <  SRR4302533.3087541/94‑1 (MQ=60)

                                                                   TCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATA                            <  SRR4302533.3752718/94‑1 (MQ=60)

                                                                   TCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATA                            <  SRR4302533.3610562/94‑1 (MQ=60)

                                                                   TCTATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATA                            <  SRR4302533.5611511/94‑1 (MQ=60)

                                                                     TATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAAA                          >  SRR4302533.5398586/1‑94 (MQ=60)

                                                                      ATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACG                         >  SRR4302533.3210215/1‑94 (MQ=60)

                                                                      ATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACG                         <  SRR4302533.1030732/94‑1 (MQ=60)

                                                                      ATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACG                         >  SRR4302533.5136174/1‑94 (MQ=60)

                                                                      ATTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACG                         >  SRR4302533.3488838/1‑94 (MQ=60)

                                                                       TTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGT                        >  SRR4302533.1183582/1‑94 (MQ=60)

                                                                       TTAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGT                        <  SRR4302533.3750336/94‑1 (MQ=60)

                                                                        TAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTC                       <  SRR4302533.3520407/94‑1 (MQ=60)

                                                                        TAACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTC                       <  SRR4302533.332659/94‑1 (MQ=60)

                                                                         AACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCG                      >  SRR4302533.5308138/1‑94 (MQ=60)

                                                                         AACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCG                      <  SRR4302533.6160950/94‑1 (MQ=60)

                                                                         AACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCG                      >  SRR4302533.3870773/1‑94 (MQ=60)

                                                                          ACGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGC                     <  SRR4302533.628302/94‑1 (MQ=60)

                                                                           CGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCG                    >  SRR4302533.3610420/1‑94 (MQ=60)

                                                                           CGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCG                    <  SRR4302533.2080714/94‑1 (MQ=60)

                                                                           AGAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCG                    <  SRR4302533.5523664/94‑1 (MQ=60)

                                                                            GAAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGC                   >  SRR4302533.5322692/1‑94 (MQ=60)

                                                                             AAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCT                  <  SRR4302533.4585695/94‑1 (MQ=60)

                                                                             AAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCT                  <  SRR4302533.4604929/94‑1 (MQ=60)

                                                                             AAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCT                  >  SRR4302533.1664581/1‑94 (MQ=60)

                                                                             AAAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCT                  >  SRR4302533.4784541/1‑94 (MQ=60)

                                                                              AAAAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTG                 >  SRR4302533.4256668/1‑94 (MQ=60)

                                                                                AAAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCT               <  SRR4302533.5114093/94‑1 (MQ=60)

                                                                                 AAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTG              >  SRR4302533.1340456/1‑94 (MQ=60)

                                                                                 AAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTG              <  SRR4302533.1709291/94‑1 (MQ=60)

                                                                                 AAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTG              >  SRR4302533.1622142/1‑94 (MQ=60)

                                                                                 AAAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTAAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTG              >  SRR4302533.3413295/1‑94 (MQ=60)

                                                                                  AAGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGT             <  SRR4302533.4149488/94‑1 (MQ=60)

                                                                                   AGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTT            <  SRR4302533.5103789/94‑1 (MQ=60)

                                                                                   AGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTT            >  SRR4302533.5199525/1‑94 (MQ=60)

                                                                                   AGCGGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTT            <  SRR4302533.6113020/94‑1 (MQ=60)

                                                                                      GGAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCG         >  SRR4302533.6342886/1‑94 (MQ=60)

                                                                                       GAAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGG        <  SRR4302533.1522068/94‑1 (MQ=60)

                                                                                        AAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGA       >  SRR4302533.5041847/1‑94 (MQ=60)

                                                                                        AAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGA       >  SRR4302533.5879941/1‑94 (MQ=60)

                                                                                        AAGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGA       <  SRR4302533.2631378/94‑1 (MQ=60)

                                                                                         AGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAG      >  SRR4302533.3596390/1‑94 (MQ=60)

                                                                                         AGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAG      <  SRR4302533.406001/94‑1 (MQ=60)

                                                                                         AGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAG      <  SRR4302533.1782721/94‑1 (MQ=60)

                                                                                         AGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAG      <  SRR4302533.2807285/94‑1 (MQ=60)

                                                                                         AGAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAG      >  SRR4302533.379451/1‑94 (MQ=60)

                                                                                          GAGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGT     >  SRR4302533.1633155/1‑94 (MQ=60)

                                                                                           AGATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTC    >  SRR4302533.854663/1‑94 (MQ=60)

                                                                                             ATCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAG  <  SRR4302533.4830064/94‑1 (MQ=60)

CGCCAGTATGGTCGCCAGTTAAATATCGTGCTTGCCCTGTTGCTGGTCTATTGCGCGGTACGCATTTTCTATTAACGAAAAAAAGCGGAAGAGGTCGCCCTCTTCCGCTTAGTAACTTGCTACTTAAGCCTTACAGGCTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAG  >  NC_000913/2713956‑2714142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`