Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,732,197 T→C intergenic (‑4/+126) clpB ← / ← yfiH ClpB/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,732,1970TC100.0% 816.5 / NA 251intergenic (‑4/+126)clpB/yfiHClpB/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (109/142);  total (109/142)

Only 100 of 266 total aligned reads displayed.

GATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAG  >  NC_000913/2732107‑2732286
                                                                                          |                                                                                         
gATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAAcccc                                                                                         >  1:4095846/1‑93 (MQ=255)
 aTAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAAcccct                                                                                        <  1:4439637/93‑1 (MQ=255)
  tAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAAcccctc                                                                                       <  2:5952302/93‑1 (MQ=255)
  tAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAAcccctc                                                                                       >  1:4078866/1‑93 (MQ=255)
    aaTTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTccc                                                                                     >  2:5455123/1‑93 (MQ=255)
     aTTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCa                                                                                    <  2:2675908/93‑1 (MQ=255)
        ggTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATaa                                                                                 >  1:4398976/1‑93 (MQ=255)
         gTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAAc                                                                                <  1:5123436/93‑1 (MQ=255)
         gTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAAc                                                                                <  1:4811383/93‑1 (MQ=255)
          ttGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACg                                                                               <  1:1922982/93‑1 (MQ=255)
            gTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGa                                                                             >  2:5891115/1‑93 (MQ=255)
             tCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGAt                                                                            <  1:1215972/93‑1 (MQ=255)
                tGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATTaa                                                                         <  2:5629761/93‑1 (MQ=255)
                tGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCaa                                                                         <  1:1099194/93‑1 (MQ=255)
                 gCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCaaa                                                                        <  2:384281/93‑1 (MQ=255)
                 gCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCaaa                                                                        >  1:3799391/1‑93 (MQ=255)
                   ccGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGt                                                                      >  2:4361191/1‑93 (MQ=255)
                    cGAGTGCAAGTGATTGGGCATCGGCAAGACCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGtt                                                                     <  2:3687188/93‑1 (MQ=255)
                      aGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGc                                                                   <  1:2506734/93‑1 (MQ=255)
                      aGTGCAAGTCATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATATCCCCTCCCATAACGGATCAAAGTTGc                                                                   <  2:4077707/93‑1 (MQ=255)
                       gTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCt                                                                  >  2:1351085/1‑93 (MQ=255)
                       gTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCt                                                                  >  2:2957481/1‑93 (MQ=255)
                        tGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTa                                                                 <  1:3722718/93‑1 (MQ=255)
                        tGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTa                                                                 <  1:2665295/93‑1 (MQ=255)
                        tGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTa                                                                 >  2:1964502/1‑93 (MQ=255)
                         gCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTAc                                                                <  2:5736721/93‑1 (MQ=255)
                          cAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACt                                                               <  1:3525298/93‑1 (MQ=255)
                           aaGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTg                                                              <  1:3421808/93‑1 (MQ=255)
                            aGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTgg                                                             >  1:5057600/1‑93 (MQ=255)
                            aGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTgg                                                             <  2:1239995/93‑1 (MQ=255)
                             gTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGga                                                            <  1:2156967/93‑1 (MQ=255)
                              tcaTTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGgag                                                           >  2:3501344/3‑93 (MQ=255)
                              tGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGgag                                                           <  1:2991799/93‑1 (MQ=255)
                               gATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGgaga                                                          <  2:604575/93‑1 (MQ=255)
                                aTTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGAt                                                         >  1:2314925/1‑93 (MQ=255)
                                aTTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGAt                                                         >  2:2530320/1‑93 (MQ=255)
                                aTTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGAt                                                         >  1:5627692/1‑93 (MQ=255)
                                  tGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTa                                                       >  2:1481949/1‑93 (MQ=255)
                                    ggCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTaaa                                                     <  1:5800591/93‑1 (MQ=255)
                                       aTCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGa                                                  <  1:3140612/93‑1 (MQ=255)
                                        tCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAg                                                 >  2:6225442/1‑93 (MQ=255)
                                         cGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAgg                                                <  2:2553606/93‑1 (MQ=255)
                                           gCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATGAAAGTTGCTACTGGAGATTAAATGAGGTc                                              >  2:891655/1‑93 (MQ=255)
                                           gCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTc                                              >  2:2337840/1‑93 (MQ=255)
                                           gCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTc                                              <  2:479989/93‑1 (MQ=255)
                                            cAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCa                                             <  2:2865045/93‑1 (MQ=255)
                                            cAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCa                                             >  2:958422/1‑93 (MQ=255)
                                             aaGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCAt                                            >  1:430768/1‑93 (MQ=255)
                                              agagCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATc                                           <  1:1396411/93‑1 (MQ=255)
                                              agagCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATc                                           >  2:833222/1‑93 (MQ=255)
                                              agagCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATc                                           <  1:1372923/93‑1 (MQ=255)
                                               gagCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATcc                                          >  1:5153707/1‑93 (MQ=255)
                                               gagCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATcc                                          >  2:5973587/1‑93 (MQ=255)
                                                agCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATccc                                         <  1:5373161/93‑1 (MQ=255)
                                                   aaGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCa                                      >  1:3387082/1‑93 (MQ=255)
                                                     gCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAat                                    <  2:3542546/93‑1 (MQ=255)
                                                      cTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAatt                                   >  2:4484340/1‑93 (MQ=255)
                                                       tGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAatta                                  <  1:5149420/93‑1 (MQ=255)
                                                       tGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAatta                                  <  1:2284394/93‑1 (MQ=255)
                                                       tGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAatta                                  >  2:3085618/1‑93 (MQ=255)
                                                        ggAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAattat                                 >  2:1783483/1‑93 (MQ=255)
                                                        ggAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAattat                                 >  1:2898543/1‑93 (MQ=255)
                                                        ggAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAattat                                 >  1:2718028/1‑93 (MQ=255)
                                                         gAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAattatt                                <  1:545617/93‑1 (MQ=255)
                                                         gAATGTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAattatt                                <  1:624682/93‑1 (MQ=255)
                                                          aaTTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTc                               >  2:4635327/1‑93 (MQ=255)
                                                            tttATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCaa                             <  2:1159049/93‑1 (MQ=255)
                                                               attaGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGt                          <  1:787572/93‑1 (MQ=255)
                                                                ttaGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGtt                         <  2:2214893/93‑1 (MQ=255)
                                                                ttaGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGtt                         >  1:5997356/1‑93 (MQ=255)
                                                                  aGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTAt                       <  1:697172/93‑1 (MQ=255)
                                                                   gTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTAtt                      <  2:3554310/93‑1 (MQ=255)
                                                                   gTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTAtt                      <  2:2241438/93‑1 (MQ=255)
                                                                   gTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTAtt                      <  1:5504223/93‑1 (MQ=255)
                                                                   gTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTAtt                      <  1:4843153/93‑1 (MQ=255)
                                                                   gTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTAtt                      <  1:4829400/93‑1 (MQ=255)
                                                                   gTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTAtt                      >  1:2115400/1‑93 (MQ=255)
                                                                   gTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTAtt                      >  1:2859303/1‑93 (MQ=255)
                                                                    tAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTg                     >  2:5471002/1‑93 (MQ=255)
                                                                     aaGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGa                    <  2:4243727/93‑1 (MQ=255)
                                                                     aaGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGa                    <  2:4920454/93‑1 (MQ=255)
                                                                        aCGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCa                 <  2:2814855/93‑1 (MQ=255)
                                                                         cGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGACATCCCTCAATTATTCAAGGTTATTGACCAg                >  1:1106417/1‑93 (MQ=255)
                                                                          gATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGa               >  2:1085579/1‑93 (MQ=255)
                                                                            tCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGTTTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGAtt             >  2:6009407/1‑93 (MQ=255)
                                                                            tCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGAtt             <  2:3174374/93‑1 (MQ=255)
                                                                            tCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGAtt             >  1:57147/1‑93 (MQ=255)
                                                                              cAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTaa           >  2:4781600/1‑93 (MQ=255)
                                                                                gACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAAtg         >  2:494126/1‑93 (MQ=255)
                                                                                gACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGCCATCCCTCAATTATTCAAGGTTATTGACCAGATTAAtg         >  1:1851080/1‑93 (MQ=255)
                                                                                  cGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAAtgtg       >  2:4936525/1‑93 (MQ=255)
                                                                                  cGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAAtgtg       <  1:1704416/93‑1 (MQ=255)
                                                                                  cGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAAtgtg       <  1:3897153/93‑1 (MQ=255)
                                                                                    cATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTgaa     >  1:1514459/1‑93 (MQ=255)
                                                                                     aTAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTgaaa    <  2:733659/93‑1 (MQ=255)
                                                                                     aTAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTgaaa    <  2:1601622/93‑1 (MQ=255)
                                                                                      tAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTgaaaa   >  2:5799645/1‑93 (MQ=255)
                                                                                      tAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTgaaaa   >  2:5324983/1‑93 (MQ=255)
                                                                                       aaCCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTgaaaag  <  1:4696070/93‑1 (MQ=255)
                                                                                       aaCCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTgaaaag  >  1:4888735/1‑93 (MQ=255)
                                                                                          |                                                                                         
GATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAG  >  NC_000913/2732107‑2732286

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAA  >  NC_000913/2732105‑2732290
                                                                                            |                                                                                             
TCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCC                                                                                              >  SRR4302533.383659/1‑94 (MQ=60)
 CGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCC                                                                                             >  SRR4302533.4120780/1‑94 (MQ=60)
  GATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCT                                                                                            <  SRR4302533.188648/94‑1 (MQ=60)
   ATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTC                                                                                           >  SRR4302533.5178754/1‑94 (MQ=60)
   ATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTC                                                                                           >  SRR4302533.4103697/1‑94 (MQ=60)
   ATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTC                                                                                           <  SRR4302533.4466472/94‑1 (MQ=60)
   ATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTC                                                                                           >  SRR4302533.2788047/1‑94 (MQ=60)
    TAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCC                                                                                          <  SRR4302533.489399/94‑1 (MQ=60)
    TAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCC                                                                                          <  SRR4302533.2753712/94‑1 (MQ=60)
     AAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCC                                                                                         >  SRR4302533.358247/1‑94 (MQ=60)
     AAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCC                                                                                         >  SRR4302533.1509016/1‑94 (MQ=60)
     AAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCC                                                                                         <  SRR4302533.5481831/94‑1 (MQ=60)
      AATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCA                                                                                        <  SRR4302533.512046/94‑1 (MQ=60)
      AATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCA                                                                                        >  SRR4302533.3835855/1‑94 (MQ=60)
       ATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGACTTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCAT                                                                                       >  SRR4302533.1698814/1‑94 (MQ=60)
        TTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATA                                                                                      <  SRR4302533.4948753/94‑1 (MQ=60)
        TTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATA                                                                                      <  SRR4302533.3886424/94‑1 (MQ=60)
         TGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAA                                                                                     >  SRR4302533.4425534/1‑94 (MQ=60)
           GTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACG                                                                                   <  SRR4302533.4840543/94‑1 (MQ=60)
           GTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACG                                                                                   >  SRR4302533.5767275/1‑94 (MQ=60)
           GTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACG                                                                                   <  SRR4302533.5154390/94‑1 (MQ=60)
            TTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGG                                                                                  <  SRR4302533.1934716/94‑1 (MQ=60)
            TTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGG                                                                                  <  SRR4302533.4109323/94‑1 (MQ=60)
              GTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGAT                                                                                <  SRR4302533.3435447/94‑1 (MQ=60)
               TCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATC                                                                               <  SRR4302533.2414712/94‑1 (MQ=60)
               TCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATC                                                                               <  SRR4302533.1223277/94‑1 (MQ=60)
                CGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCA                                                                              >  SRR4302533.2729352/1‑94 (MQ=60)
                CGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCA                                                                              >  SRR4302533.5477497/1‑94 (MQ=60)
                 GTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAA                                                                             >  SRR4302533.2992419/1‑94 (MQ=60)
                 GTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAA                                                                             >  SRR4302533.2242568/1‑94 (MQ=60)
                  TGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAA                                                                            >  SRR4302533.3822650/1‑94 (MQ=60)
                  TGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAA                                                                            <  SRR4302533.1105709/94‑1 (MQ=60)
                  TGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAA                                                                            >  SRR4302533.4809106/1‑94 (MQ=60)
                  TGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAA                                                                            <  SRR4302533.6308501/94‑1 (MQ=60)
                   GCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAG                                                                           >  SRR4302533.2618822/1‑94 (MQ=60)
                    CCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGT                                                                          >  SRR4302533.2911726/1‑94 (MQ=60)
                     CCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTT                                                                         >  SRR4302533.1500861/1‑94 (MQ=60)
                      CGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTG                                                                        <  SRR4302533.2211218/94‑1 (MQ=60)
                        AGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCT                                                                      <  SRR4302533.2522186/94‑1 (MQ=60)
                          TGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTAC                                                                    <  SRR4302533.2681651/94‑1 (MQ=60)
                          TGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTAC                                                                    <  SRR4302533.3745561/94‑1 (MQ=60)
                          TGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTAC                                                                    <  SRR4302533.4242808/94‑1 (MQ=60)
                           GCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACT                                                                   <  SRR4302533.527360/94‑1 (MQ=60)
                           GCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACT                                                                   <  SRR4302533.3788336/94‑1 (MQ=60)
                           GCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATGTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACT                                                                   <  SRR4302533.2395215/94‑1 (MQ=60)
                            CAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTG                                                                  <  SRR4302533.3547023/94‑1 (MQ=60)
                             AAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAATTTGCTACTGG                                                                 <  SRR4302533.5155056/94‑1 (MQ=60)
                             AAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGG                                                                 <  SRR4302533.3442947/94‑1 (MQ=60)
                             AAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGG                                                                 >  SRR4302533.5088166/1‑94 (MQ=60)
                              AGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGA                                                                <  SRR4302533.3317306/94‑1 (MQ=60)
                               GTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAG                                                               >  SRR4302533.3128297/1‑94 (MQ=60)
                               GTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAG                                                               <  SRR4302533.880629/94‑1 (MQ=60)
                               GTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAG                                                               <  SRR4302533.2170246/94‑1 (MQ=60)
                                TGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGA                                                              <  SRR4302533.3010094/94‑1 (MQ=60)
                                 GATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGAT                                                             >  SRR4302533.5661717/1‑94 (MQ=60)
                                 GATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGAT                                                             >  SRR4302533.2329264/1‑94 (MQ=60)
                                  ATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATT                                                            <  SRR4302533.4450367/94‑1 (MQ=60)
                                   TTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTA                                                           <  SRR4302533.464827/94‑1 (MQ=60)
                                      GGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAAT                                                        <  SRR4302533.5835633/94‑1 (MQ=60)
                                       GCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATG                                                       <  SRR4302533.4798267/94‑1 (MQ=60)
                                         ATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAG                                                     >  SRR4302533.1967673/1‑94 (MQ=60)
                                         ATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAG                                                     <  SRR4302533.3159920/94‑1 (MQ=60)
                                         ATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAG                                                     <  SRR4302533.72082/94‑1 (MQ=60)
                                         ATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAG                                                     <  SRR4302533.2620888/94‑1 (MQ=60)
                                         ATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAG                                                     <  SRR4302533.434818/94‑1 (MQ=60)
                                           CGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGT                                                   <  SRR4302533.550914/94‑1 (MQ=60)
                                           CGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGT                                                   <  SRR4302533.4345138/94‑1 (MQ=60)
                                            GGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTC                                                  >  SRR4302533.5257901/1‑94 (MQ=60)
                                              CAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCAT                                                >  SRR4302533.433336/1‑94 (MQ=60)
                                              CAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCAT                                                <  SRR4302533.6020940/94‑1 (MQ=60)
                                                AGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCC                                              >  SRR4302533.5184836/1‑94 (MQ=60)
                                                AGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCC                                              <  SRR4302533.1381182/94‑1 (MQ=60)
                                                AGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCC                                              <  SRR4302533.1404828/94‑1 (MQ=60)
                                                AGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCC                                              <  SRR4302533.485552/94‑1 (MQ=60)
                                                 GAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCC                                             <  SRR4302533.3275134/94‑1 (MQ=60)
                                                  AGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCT                                            <  SRR4302533.5405445/94‑1 (MQ=60)
                                                    CAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCA                                          >  SRR4302533.3407994/1‑94 (MQ=60)
                                                     AAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAA                                         >  SRR4302533.1915896/1‑94 (MQ=60)
                                                       GCTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATT                                       >  SRR4302533.5181892/1‑94 (MQ=60)
                                                        CTGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTA                                      <  SRR4302533.3985725/94‑1 (MQ=60)
                                                         TGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTAT                                     <  SRR4302533.2298532/94‑1 (MQ=60)
                                                         TGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTAT                                     >  SRR4302533.2734716/1‑94 (MQ=60)
                                                         TGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTAT                                     >  SRR4302533.2916357/1‑94 (MQ=60)
                                                         TGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTAT                                     <  SRR4302533.5180532/94‑1 (MQ=60)
                                                         TGGAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTAT                                     <  SRR4302533.1169344/94‑1 (MQ=60)
                                                           GAATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTC                                   <  SRR4302533.548860/94‑1 (MQ=60)
                                                           GAATGTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTC                                   <  SRR4302533.628350/94‑1 (MQ=60)
                                                            AATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCA                                  <  SRR4302533.5877343/94‑1 (MQ=60)
                                                            AATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCA                                  >  SRR4302533.2319953/1‑94 (MQ=60)
                                                            AATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCA                                  >  SRR4302533.4553621/1‑94 (MQ=60)
                                                            AATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCA                                  >  SRR4302533.3077120/1‑94 (MQ=60)
                                                             ATTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAA                                 <  SRR4302533.6222319/94‑1 (MQ=60)
                                                              TTTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAG                                <  SRR4302533.1111713/94‑1 (MQ=60)
                                                               TTATTAGTAAGACGATCCAGACGCATACCCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGG                               <  SRR4302533.5629122/94‑1 (MQ=60)
                                                               TTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGG                               <  SRR4302533.3455839/94‑1 (MQ=60)
                                                               TTATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGG                               <  SRR4302533.4898497/94‑1 (MQ=60)
                                                                TATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGT                              <  SRR4302533.117839/94‑1 (MQ=60)
                                                                 ATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTT                             >  SRR4302533.6033679/1‑94 (MQ=60)
                                                                 ATTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTT                             <  SRR4302533.792198/94‑1 (MQ=60)
                                                                  TTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTA                            <  SRR4302533.5588585/94‑1 (MQ=60)
                                                                  TTAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTA                            <  SRR4302533.2908720/94‑1 (MQ=60)
                                                                   TAGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTAT                           <  SRR4302533.5696783/94‑1 (MQ=60)
                                                                    AGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATT                          >  SRR4302533.2876893/1‑94 (MQ=60)
                                                                    AGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATT                          >  SRR4302533.2128446/1‑94 (MQ=60)
                                                                    AGTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATT                          <  SRR4302533.701296/94‑1 (MQ=60)
                                                                     GTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTG                         <  SRR4302533.5537433/94‑1 (MQ=60)
                                                                     GTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTG                         <  SRR4302533.4872507/94‑1 (MQ=60)
                                                                     GTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTG                         <  SRR4302533.4858668/94‑1 (MQ=60)
                                                                     GTAAGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTG                         <  SRR4302533.4858667/94‑1 (MQ=60)
                                                                        AGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACC                      <  SRR4302533.1245854/94‑1 (MQ=60)
                                                                        AGACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATCCAAGGTTATTGACC                      <  SRR4302533.5715451/94‑1 (MQ=60)
                                                                          ACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAG                    <  SRR4302533.138582/94‑1 (MQ=60)
                                                                          ACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAG                    <  SRR4302533.4274629/94‑1 (MQ=60)
                                                                          ACGATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGACATCCCTCAATTATTCAAGGTTATTGACCAG                    >  SRR4302533.1112979/1‑94 (MQ=60)
                                                                             ATCCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATT                 >  SRR4302533.57528/1‑94 (MQ=60)
                                                                               CCAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAA               >  SRR4302533.936627/1‑94 (MQ=60)
                                                                                CAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAAT              >  SRR4302533.2141709/1‑94 (MQ=60)
                                                                                CAGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAAT              <  SRR4302533.3555843/94‑1 (MQ=60)
                                                                                 AGACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGCCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATG             >  SRR4302533.1862366/1‑94 (MQ=60)
                                                                                  GACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGT            <  SRR4302533.3990634/94‑1 (MQ=60)
                                                                                   ACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTG           <  SRR4302533.710416/94‑1 (MQ=60)
                                                                                   ACGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTG           <  SRR4302533.1751934/94‑1 (MQ=60)
                                                                                    CGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGA          <  SRR4302533.1714740/94‑1 (MQ=60)
                                                                                    CGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGA          <  SRR4302533.1381432/94‑1 (MQ=60)
                                                                                    CGCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGA          <  SRR4302533.3920934/94‑1 (MQ=60)
                                                                                     GCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAA         >  SRR4302533.1523582/1‑94 (MQ=60)
                                                                                     GCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAA         <  SRR4302533.1794035/94‑1 (MQ=60)
                                                                                     GCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAA         >  SRR4302533.5135651/1‑94 (MQ=60)
                                                                                     GCATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAA         >  SRR4302533.6034542/1‑94 (MQ=60)
                                                                                      CATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAA        >  SRR4302533.2152025/1‑94 (MQ=60)
                                                                                       ATAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAA       <  SRR4302533.3495853/94‑1 (MQ=60)
                                                                                        TAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAG      >  SRR4302533.4918356/1‑94 (MQ=60)
                                                                                        TAACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAG      <  SRR4302533.486744/94‑1 (MQ=60)
                                                                                         AACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGA     >  SRR4302533.1589168/1‑94 (MQ=60)
                                                                                         AACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGA     >  SRR4302533.722877/1‑94 (MQ=60)
                                                                                         AACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGA     <  SRR4302533.4724534/94‑1 (MQ=60)
                                                                                          ACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAA    <  SRR4302533.4831339/94‑1 (MQ=60)
                                                                                          ACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAA    <  SRR4302533.5952034/94‑1 (MQ=60)
                                                                                          ACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAA    >  SRR4302533.1894174/1‑94 (MQ=60)
                                                                                          ACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAA    <  SRR4302533.3032152/94‑1 (MQ=60)
                                                                                          ACCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAA    <  SRR4302533.503860/94‑1 (MQ=60)
                                                                                           CCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAA   <  SRR4302533.5352653/94‑1 (MQ=60)
                                                                                           CCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAA   >  SRR4302533.3051079/1‑94 (MQ=60)
                                                                                           CCCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAA   >  SRR4302533.958520/1‑94 (MQ=60)
                                                                                            CCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAA  >  SRR4302533.1454370/1‑94 (MQ=60)
                                                                                            CCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAA  <  SRR4302533.2031184/94‑1 (MQ=60)
                                                                                            CCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAA  >  SRR4302533.4029312/1‑94 (MQ=60)
                                                                                            CCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAA  >  SRR4302533.4309071/1‑94 (MQ=60)
                                                                                            |                                                                                             
TCGATAAATTGGTTGTCGTGCCCGAGTGCAAGTGATTGGGCATCGGCAAGAGCAAGCTGGAATTTATTAGTAAGACGATCCAGACGCATAACTCCTCCCATAACGGATCAAAGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAA  >  NC_000913/2732105‑2732290

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑