Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,747,389	Δ1 bp	coding (572/591 nt)	b4540 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,747,388	0	C	.	100.0%	1109.9 / NA	239	coding (571/591 nt)	b4540	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (130/109); total (130/109)

Only 100 of 258 total aligned reads displayed.

CTTTGAGCAAAGAAGAGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGATCCTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGATTCTGC  >  NC_000913/2747296‑2747476

ctTTGAGCAAAGAAGAGTTGCGCACTATCGTGCTCGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGATc                                                                                          >  1:1669386/1‑93 (MQ=255)

   tGAGCAAAGAAGAGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGATctgg                                                                                       >  1:3839247/1‑90 (MQ=255)

    gAGCAAAGAAGAGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGATctgga                                                                                      <  1:1517097/93‑5 (MQ=255)

        aaaGAAGAGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGaaaaa                                                                                 >  2:4498882/1‑93 (MQ=255)

         aagaagAGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGaaaaaa                                                                                >  2:1357925/1‑93 (MQ=255)

         aagaagAGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGaaaaaa                                                                                <  1:2415695/93‑1 (MQ=255)

         aagaagAGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGATGTCGGTGCTCGATCTTGaaaaaa                                                                                 >  2:3759590/1‑93 (MQ=255)

          agaagaGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGaaaaaaa                                                                               >  1:3230784/1‑92 (MQ=255)

          agaagaGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAAt                                                                               >  2:1792639/1‑93 (MQ=255)

          agaagaGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAAt                                                                               <  1:4019341/93‑1 (MQ=255)

           gaagaGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATg                                                                              <  2:337109/93‑1 (MQ=255)

           gaagaGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATg                                                                              >  1:2726509/1‑93 (MQ=255)

           gaagaGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATg                                                                              >  2:2603456/1‑93 (MQ=255)

           gaagaGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATg                                                                              <  1:3428608/93‑1 (MQ=255)

            aagaGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGa                                                                             <  2:3198123/93‑1 (MQ=255)

            aagaGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGa                                                                             <  2:3051956/93‑1 (MQ=255)

            aagaGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGa                                                                             <  1:4803970/93‑1 (MQ=255)

            aagaGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGa                                                                             >  2:1925185/1‑93 (MQ=255)

            aagaGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGa                                                                             <  2:6285450/93‑1 (MQ=255)

             agagTTGCGCACTATCGTGCACGAATCACGGTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGAc                                                                            >  1:297035/1‑93 (MQ=255)

              gagTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGAcc                                                                           <  2:6194677/93‑1 (MQ=255)

                gTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAATAAATGACCgc                                                                         >  1:2275271/1‑92 (MQ=255)

                   gcgcACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTtga                                                                      <  2:927842/93‑1 (MQ=255)

                   gcgcACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTtga                                                                      <  2:5983276/93‑1 (MQ=255)

                    cgcACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTtgat                                                                     <  2:877572/93‑1 (MQ=255)

                      cACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTtgatga                                                                   >  2:1619677/1‑93 (MQ=255)

                       aCTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGAc                                                                  >  1:1421806/1‑93 (MQ=255)

                       aCTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGAc                                                                  >  1:4331455/1‑93 (MQ=255)

                       aCTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGAc                                                                  <  1:4878638/93‑1 (MQ=255)

                       aCTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGAc                                                                  >  1:4988732/1‑93 (MQ=255)

                        cTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGGAAAAATGACCGTTGATGAca                                                                 >  1:1782864/1‑93 (MQ=255)

                        cTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGAca                                                                 <  2:3316764/93‑1 (MQ=255)

                        cTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGAca                                                                 >  2:1953036/1‑93 (MQ=255)

                          aTCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGAcatc                                                               >  2:4412235/1‑93 (MQ=255)

                           tCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGAcatca                                                              >  1:1114605/1‑93 (MQ=255)

                           tCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGAcatca                                                              <  1:4299447/93‑1 (MQ=255)

                            cGTGCACGAATCATGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGAcatcat                                                             <  1:4581/93‑1 (MQ=255)

                            cGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGAcatcat                                                             <  1:1307736/93‑1 (MQ=255)

                             gTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATg                                                            <  2:3448067/93‑1 (MQ=255)

                             gTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATg                                                            <  2:2046713/93‑1 (MQ=255)

                              tGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATgg                                                           <  2:5420689/93‑1 (MQ=255)

                               gCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGt                                                          <  1:3981003/93‑1 (MQ=255)

                                 aCGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGc                                                        <  2:1180421/93‑1 (MQ=255)

                                  cGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGcc                                                       >  1:2936203/1‑93 (MQ=255)

                                    aaTCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCcgc                                                     >  1:1023968/1‑93 (MQ=255)

                                    aaTCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCcgc                                                     >  1:5366412/1‑93 (MQ=255)

                                     aTCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCcgcg                                                    >  2:2271642/1‑93 (MQ=255)

                                      tCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCgcgc                                                   <  1:1889327/93‑1 (MQ=255)

                                       cACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCa                                                  >  1:4618189/1‑93 (MQ=255)

                                         cGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGt                                                <  2:2729101/93‑1 (MQ=255)

                                            tCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGaa                                             >  1:5057440/1‑93 (MQ=255)

                                            tCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGaa                                             <  1:3459551/93‑1 (MQ=255)

                                             cacaAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGaaa                                            <  2:1550769/93‑1 (MQ=255)

                                             cacaAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGaaa                                            >  2:4080362/1‑93 (MQ=255)

                                              acaAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAAt                                           >  1:4915656/1‑93 (MQ=255)

                                              acaAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAAt                                           >  2:4267112/1‑93 (MQ=255)

                                               caAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAAtt                                          <  1:853415/93‑1 (MQ=255)

                                                aaaTTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTa                                         <  1:5338488/93‑1 (MQ=255)

                                                 aaTTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTAt                                        <  2:851919/93‑1 (MQ=255)

                                                 aaTTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTAt                                        >  1:2573758/1‑93 (MQ=255)

                                                   ttccccGTCGCAATCAGGATATGCTGCTGTCGGTGCTGGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATcc                                      <  2:3638759/90‑2 (MQ=255)

                                                     tCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGt                                    >  2:5326408/1‑93 (MQ=255)

                                                     tCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGt                                    <  2:3463126/93‑1 (MQ=255)

                                                      cccTTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGTCGCGCAGTGAAATTATCGGTa                                   <  2:2860898/93‑1 (MQ=255)

                                                        cGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTAtt                                 >  2:5582570/1‑93 (MQ=255)

                                                        cGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTAtt                                 >  2:5838780/1‑93 (MQ=255)

                                                          tCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTgt                               >  2:4341480/1‑92 (MQ=255)

                                                           cGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGat                              >  2:4025034/1‑93 (MQ=255)

                                                            gCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGata                             <  2:2536112/93‑1 (MQ=255)

                                                            gCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGata                             <  2:2115965/93‑1 (MQ=255)

                                                            gCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGata                             >  2:5818944/1‑93 (MQ=255)

                                                              aaTCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATc                           >  1:5533823/1‑93 (MQ=255)

                                                              aaTCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATc                           >  1:3184585/1‑93 (MQ=255)

                                                                tCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCaa                         >  2:3071376/1‑93 (MQ=255)

                                                                tCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCaa                         >  2:1638421/1‑93 (MQ=255)

                                                                tCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCaa                         >  1:521385/1‑93 (MQ=255)

                                                                  aGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACg                       >  2:4722947/1‑93 (MQ=255)

                                                                   ggATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGa                      <  2:2871984/93‑1 (MQ=255)

                                                                   ggATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGa                      <  1:5126399/93‑1 (MQ=255)

                                                                   ggATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGa                      <  1:2638048/93‑1 (MQ=255)

                                                                   ggATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGa                      >  2:1835463/1‑93 (MQ=255)

                                                                   ggATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGa                      >  1:2122238/1‑93 (MQ=255)

                                                                    gATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGAt                     >  1:1200614/1‑93 (MQ=255)

                                                                    gATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGAt                     <  1:6206723/93‑1 (MQ=255)

                                                                     atatGCTGCTTTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATg                    >  1:2100974/1‑93 (MQ=255)

                                                                      tatGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGa                   <  2:2376722/93‑1 (MQ=255)

                                                                       atGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGCGAAATTATCGGTATTGATATCAACGATGAc                  >  1:651715/1‑93 (MQ=255)

                                                                         gctgctGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTg                <  1:3136037/93‑1 (MQ=255)

                                                                         gctgctGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTg                >  1:5672895/1‑93 (MQ=255)

                                                                               gtaggTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATc          <  2:5066866/90‑1 (MQ=255)

                                                                               gTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATc          >  1:5804950/1‑93 (MQ=255)

                                                                               gTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATc          >  2:1046984/1‑93 (MQ=255)

                                                                                  ggTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGAt       >  1:6277663/1‑93 (MQ=255)

                                                                                    tGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGATTc     <  1:3673189/93‑1 (MQ=255)

                                                                                    ggCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGATTc     <  1:3563519/92‑1 (MQ=255)

                                                                                     gCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGATTCt    >  2:1019140/1‑93 (MQ=255)

                                                                                       tCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGATTCTgc  >  1:6078453/1‑93 (MQ=255)

                                                                                       tCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGATTCTgc  >  2:4148926/1‑93 (MQ=255)

                                                                                       tCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGATTCTgc  <  2:294378/93‑1 (MQ=255)

                                                                                       tCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGCGCCGCGCAGTGAAATTATCGGTATTGATATCAACGTTGACTGGAAATCGATTCTgc  >  1:4941237/1‑93 (MQ=255)

CTTTGAGCAAAGAAGAGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGATCCTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGATTCTGC  >  NC_000913/2747296‑2747476

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTTTGAGCAAAGAAGAGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGATCCTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGATTCTGCGCCAAC  >  NC_000913/2747296‑2747482

CTTTGAGCAAAGAAGAGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGATCT                                                                                               <  SRR4302533.5550115/94‑1 (MQ=60)

CTTTGAGCAAAGAAGAGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGATCT                                                                                               >  SRR4302533.561773/1‑94 (MQ=60)

  TTGAGCAAAGAAGAGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGG                                                                                            >  SRR4302533.3862701/1‑94 (MQ=60)

    GAGCAAAGAAGAGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAA                                                                                          <  SRR4302533.3988778/94‑1 (MQ=60)

    GAGCAAAGAAGAGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAA                                                                                          <  SRR4302533.1526231/94‑1 (MQ=60)

        AAAGAAGAGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAA                                                                                      >  SRR4302533.3716284/1‑94 (MQ=60)

         AAGAAGAGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAAT                                                                                     <  SRR4302533.2430618/94‑1 (MQ=60)

         AAGAAGAGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAAT                                                                                     >  SRR4302533.745865/1‑94 (MQ=60)

         AAGAAGAGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAAA                                                                                     >  SRR4302533.3250700/1‑94 (MQ=60)

          AGAAGAGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATG                                                                                    <  SRR4302533.4043817/94‑1 (MQ=60)

          AGAAGAGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATG                                                                                    >  SRR4302533.2743231/1‑94 (MQ=60)

          AGAAGAGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATG                                                                                    <  SRR4302533.5151656/94‑1 (MQ=60)

           GAAGAGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGA                                                                                   <  SRR4302533.3449791/94‑1 (MQ=60)

           GAAGAGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGA                                                                                   <  SRR4302533.1818273/94‑1 (MQ=60)

           GAAGAGATGCGCACTATCGTGCACGAATCACGCTCACAAATTTCTCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAACAATGA                                                                                   >  SRR4302533.1630560/1‑94 (MQ=60)

            AAGAGTTGCGCACTATCGTGCACGAATCACGGTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGAC                                                                                  >  SRR4302533.298854/1‑94 (MQ=60)

            AAGAGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGAC                                                                                  <  SRR4302533.4833062/94‑1 (MQ=60)

            AAGAGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGAC                                                                                  >  SRR4302533.3573044/1‑94 (MQ=60)

              GAGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCG                                                                                <  SRR4302533.2979119/94‑1 (MQ=60)

               GGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGT                                                                               <  SRR4302533.2127126/94‑1 (MQ=60)

               AGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAATAAATGACCGC                                                                               >  SRR4302533.2289360/1‑94 (MQ=60)

               AGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGT                                                                               >  SRR4302533.1397741/1‑94 (MQ=60)

                 TTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTG                                                                             <  SRR4302533.881238/94‑1 (MQ=60)

                   GCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGAT                                                                           >  SRR4302533.1424384/1‑94 (MQ=60)

                    CGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATG                                                                          >  SRR4302533.170672/1‑94 (MQ=60)

                      CACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGAC                                                                        <  SRR4302533.252540/94‑1 (MQ=60)

                      CACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGAC                                                                        >  SRR4302533.4357552/1‑94 (MQ=60)

                      CACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGAC                                                                        >  SRR4302533.5018977/1‑94 (MQ=60)

                      CACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGAC                                                                        >  SRR4302533.3222070/1‑94 (MQ=60)

                      CACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGAC                                                                        <  SRR4302533.4170793/94‑1 (MQ=60)

                      CACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGAC                                                                        >  SRR4302533.1430404/1‑94 (MQ=60)

                      CACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGATGCTGTCGGTGCTAGCT‑CTGGCAAAAATGACCGTTGATGAA                                                                        >  SRR4302533.44463/1‑94 (MQ=60)

                       ACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGGAAAAATGACCGTTGATGACA                                                                       >  SRR4302533.1793711/1‑94 (MQ=60)

                       ACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACA                                                                       <  SRR4302533.4908192/94‑1 (MQ=60)

                        CTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACAT                                                                      >  SRR4302533.2603330/1‑94 (MQ=60)

                        CTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACAT                                                                      >  SRR4302533.6249159/1‑94 (MQ=60)

                        CTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGCTGATGACAT                                                                      >  SRR4302533.227372/1‑94 (MQ=60)

                          ATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCA                                                                    >  SRR4302533.1121214/1‑94 (MQ=60)

                          ATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCA                                                                    >  SRR4302533.4842661/1‑94 (MQ=60)

                           TCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCAT                                                                   <  SRR4302533.4325303/94‑1 (MQ=60)

                            CGTGCACGAATCATGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATG                                                                  <  SRR4302533.4622/94‑1 (MQ=60)

                            CGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATG                                                                  <  SRR4302533.1315588/94‑1 (MQ=60)

                            CGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATG                                                                  >  SRR4302533.5056678/1‑94 (MQ=60)

                            CGTACACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATG                                                                  >  SRR4302533.1157279/1‑94 (MQ=60)

                             GTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGG                                                                 <  SRR4302533.3777618/94‑1 (MQ=60)

                              TGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGT                                                                >  SRR4302533.6065355/1‑94 (MQ=60)

                              TGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGT                                                                >  SRR4302533.5752274/1‑94 (MQ=60)

                               GCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTG                                                               <  SRR4302533.4005240/94‑1 (MQ=60)

                               GCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTG                                                               <  SRR4302533.3064315/94‑1 (MQ=60)

                               GCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTG                                                               >  SRR4302533.6256729/1‑94 (MQ=60)

                                 ACGAATCACGCTCACAACTTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAGAAATGACCGTTGATGACATCATGGTGCC                                                             >  SRR4302533.1264630/1‑94 (MQ=60)

                                 ACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCC                                                             >  SRR4302533.2954153/1‑94 (MQ=60)

                                   GAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGC                                                           >  SRR4302533.1029986/1‑94 (MQ=60)

                                   GAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGC                                                           >  SRR4302533.5398647/1‑94 (MQ=60)

                                     ATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGC                                                         >  SRR4302533.172828/1‑94 (MQ=60)

                                      TCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCA                                                        <  SRR4302533.1900867/94‑1 (MQ=60)

                                      TCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCA                                                        >  SRR4302533.4646176/1‑94 (MQ=60)

                                       CACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAG                                                       <  SRR4302533.218712/94‑1 (MQ=60)

                                          GCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGA                                                    >  SRR4302533.495908/1‑94 (MQ=60)

                                           CTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAA                                                   >  SRR4302533.5088005/1‑94 (MQ=60)

                                           CTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAA                                                   >  SRR4302533.1984092/1‑94 (MQ=60)

                                            TCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAA                                                  >  SRR4302533.264697/1‑94 (MQ=60)

                                            TCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAA                                                  <  SRR4302533.3480907/94‑1 (MQ=60)

                                             CACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAAT                                                 >  SRR4302533.4945432/1‑94 (MQ=60)

                                              ACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATT                                                <  SRR4302533.5907921/94‑1 (MQ=60)

                                               CAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTA                                               <  SRR4302533.4575979/94‑1 (MQ=60)

                                               CAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTA                                               <  SRR4302533.858413/94‑1 (MQ=60)

                                               CAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTA                                               >  SRR4302533.3900308/1‑94 (MQ=60)

                                                AAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTAT                                              >  SRR4302533.1097688/1‑94 (MQ=60)

                                                AAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTAT                                              <  SRR4302533.5370498/94‑1 (MQ=60)

                                                AAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTAT                                              >  SRR4302533.2589591/1‑94 (MQ=60)

                                                 AATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATC                                             <  SRR4302533.2672654/94‑1 (MQ=60)

                                                 AATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATC                                             <  SRR4302533.5365784/94‑1 (MQ=60)

                                                  ATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCG                                            <  SRR4302533.987446/94‑1 (MQ=60)

                                                  ATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCG                                            <  SRR4302533.4952612/94‑1 (MQ=60)

                                                     TCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTA                                         <  SRR4302533.3341468/94‑1 (MQ=60)

                                                      CCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTCGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTAT                                        >  SRR4302533.648416/1‑94 (MQ=60)

                                                       CCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATT                                       >  SRR4302533.4727497/1‑94 (MQ=60)

                                                        CGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTG                                      >  SRR4302533.2459994/1‑94 (MQ=60)

                                                         GTCGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATTACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGA                                     >  SRR4302533.800669/1‑94 (MQ=60)

                                                           CGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATA                                   >  SRR4302533.4329454/1‑94 (MQ=60)

                                                           CGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATA                                   <  SRR4302533.2845155/94‑1 (MQ=60)

                                                           CGCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATA                                   >  SRR4302533.2929701/1‑94 (MQ=60)

                                                            GTAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATAT                                  <  SRR4302533.3293540/94‑1 (MQ=60)

                                                            GCAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATAT                                  <  SRR4302533.2340006/94‑1 (MQ=60)

                                                             CAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATC                                 >  SRR4302533.3204172/1‑94 (MQ=60)

                                                             CAATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATC                                 >  SRR4302533.5567233/1‑94 (MQ=60)

                                                              AATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCA                                >  SRR4302533.4047220/1‑94 (MQ=60)

                                                               ATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAA                               >  SRR4302533.524477/1‑94 (MQ=60)

                                                               ATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAA                               >  SRR4302533.5383311/1‑94 (MQ=60)

                                                               ATCAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAA                               >  SRR4302533.4015070/1‑94 (MQ=60)

                                                                 CAGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGTAATTATCGGTATTGATATCAACG                             >  SRR4302533.5049136/1‑94 (MQ=60)

                                                                  AGGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGA                            >  SRR4302533.2135320/1‑94 (MQ=60)

                                                                   GGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGAT                           <  SRR4302533.5157368/94‑1 (MQ=60)

                                                                   GGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGAT                           >  SRR4302533.1207825/1‑94 (MQ=60)

                                                                   GGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGAT                           <  SRR4302533.2654260/94‑1 (MQ=60)

                                                                   GGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGAT                           <  SRR4302533.4987827/94‑1 (MQ=60)

                                                                   GGATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGAT                           <  SRR4302533.3155801/94‑1 (MQ=60)

                                                                    GATATGCTGCTTTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATG                          >  SRR4302533.2113931/1‑94 (MQ=60)

                                                                    GATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATG                          <  SRR4302533.3648427/94‑1 (MQ=60)

                                                                    GATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATG                          <  SRR4302533.6243943/94‑1 (MQ=60)

                                                                     ATATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGA                         <  SRR4302533.3188811/94‑1 (MQ=60)

                                                                      TATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGAC                        >  SRR4302533.4774848/1‑94 (MQ=60)

                                                                      TATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGCGAAATTATCGGTATTGATATCAACGATGAC                        >  SRR4302533.655565/1‑94 (MQ=60)

                                                                       ATGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACT                       >  SRR4302533.5405729/1‑94 (MQ=60)

                                                                        TGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTG                      >  SRR4302533.5707156/1‑94 (MQ=60)

                                                                        TGCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTG                      >  SRR4302533.5148780/1‑94 (MQ=60)

                                                                         GCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGG                     >  SRR4302533.4639664/1‑94 (MQ=60)

                                                                         GCTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGG                     <  SRR4302533.3155321/94‑1 (MQ=60)

                                                                          CTGCTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGA                    >  SRR4302533.1679136/1‑94 (MQ=60)

                                                                             CTGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAAT                 <  SRR4302533.3470539/94‑1 (MQ=60)

                                                                              TGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATC                >  SRR4302533.5840005/1‑94 (MQ=60)

                                                                              TGTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATC                <  SRR4302533.3154520/94‑1 (MQ=60)

                                                                               GTCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCG               <  SRR4302533.151327/94‑1 (MQ=60)

                                                                                TCGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGA              <  SRR4302533.6208563/94‑1 (MQ=60)

                                                                                 CGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGAT             <  SRR4302533.1916752/94‑1 (MQ=60)

                                                                                 CGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGAT             <  SRR4302533.581401/94‑1 (MQ=60)

                                                                                 CGGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGAT             >  SRR4302533.6315144/1‑94 (MQ=60)

                                                                                  GGTGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGATT            >  SRR4302533.5318838/1‑94 (MQ=60)

                                                                                    TGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGATTCT          <  SRR4302533.3695761/94‑1 (MQ=60)

                                                                                    TGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGATTCT          >  SRR4302533.5163998/1‑94 (MQ=60)

                                                                                    TGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGATTCT          <  SRR4302533.3517936/94‑1 (MQ=60)

                                                                                    GGCTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGATTCT          <  SRR4302533.3585475/94‑1 (MQ=60)

                                                                                      CTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGATTCTGC        >  SRR4302533.1141371/1‑94 (MQ=60)

                                                                                      CTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGATTCTGC        >  SRR4302533.6115216/1‑94 (MQ=60)

                                                                                      CTCGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGCGCCGCGCAGTGAAATTATCGGTATTGATATCAACGTTGACTGGAAATCGATTCTGC        >  SRR4302533.4971150/1‑94 (MQ=60)

                                                                                        CGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGATTCTGCGC      >  SRR4302533.619437/1‑94 (MQ=60)

                                                                                        CGAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGATTCTGCGC      >  SRR4302533.166701/1‑94 (MQ=60)

                                                                                         GAT‑CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGATTCTGCGCC     <  SRR4302533.2093729/94‑1 (MQ=60)

                                                                                           atCTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGATTCTGCGCCA    <  SRR4302533.1156736/92‑1 (MQ=60)

                                                                                           atCTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGATTCTGCGCCA    <  SRR4302533.1146799/92‑1 (MQ=60)

                                                                                            TCTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGATTCTGCGCCAA   <  SRR4302533.4809623/94‑1 (MQ=60)

                                                                                             CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGATTCTGCGCCAAC  >  SRR4302533.1452166/1‑94 (MQ=60)

                                                                                             CTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGATTCTGCGCCAAC  >  SRR4302533.2346093/1‑94 (MQ=60)

CTTTGAGCAAAGAAGAGTTGCGCACTATCGTGCACGAATCACGCTCACAAATTTCCCGTCGCAATCAGGATATGCTGCTGTCGGTGCTCGATCCTGGAAAAAATGACCGTTGATGACATCATGGTGCCGCGCAGTGAAATTATCGGTATTGATATCAACGATGACTGGAAATCGATTCTGCGCCAAC  >  NC_000913/2747296‑2747482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`