Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,772,146	C→T	L270F (CTT→TTT)	yfjW →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,772,146	0	C	T	100.0%	840.6 / NA	226	L270F (CTT→TTT)	yfjW	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (110/116); total (110/116)

Only 100 of 229 total aligned reads displayed.

ATATATAATGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGCTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGTGAATCCGCT  >  NC_000913/2772056‑2772235

 tatataATGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTg                                                                                        <  2:4046702/93‑1 (MQ=255)

   tataATGATACACAGGGTTTAGGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGAt                                                                                      <  2:716817/93‑1 (MQ=255)

   tataATGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGAt                                                                                      <  1:3427408/93‑1 (MQ=255)

     taATGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGc                                                                                    >  1:5276819/1‑93 (MQ=255)

     taATGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGc                                                                                    <  1:965667/93‑1 (MQ=255)

     taATGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGc                                                                                    >  2:1504188/1‑93 (MQ=255)

       aTGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTa                                                                                  <  1:6231430/93‑1 (MQ=255)

       aTGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTa                                                                                  >  1:2934938/1‑93 (MQ=255)

       aTGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTa                                                                                  >  2:599462/1‑93 (MQ=255)

       aTGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTa                                                                                  <  1:4012173/93‑1 (MQ=255)

        tGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTaa                                                                                 <  1:1846873/93‑1 (MQ=255)

         gATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTaaa                                                                                <  2:5190363/93‑1 (MQ=255)

         gATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTaaa                                                                                >  1:5006424/1‑93 (MQ=255)

            acacAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTaaaaaa                                                                             <  1:4533555/93‑1 (MQ=255)

            acacAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTaaaaaa                                                                             >  2:808655/1‑93 (MQ=255)

              acaGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATc                                                                           <  1:158896/93‑1 (MQ=255)

              acaGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATc                                                                           <  1:833155/93‑1 (MQ=255)

              acaGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATc                                                                           <  1:1174023/93‑1 (MQ=255)

               caGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCt                                                                          >  2:5669810/1‑93 (MQ=255)

               caGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCt                                                                          >  2:4991622/1‑93 (MQ=255)

               caGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCt                                                                          <  1:3598527/93‑1 (MQ=255)

                 gggTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCttt                                                                        >  2:3880233/1‑93 (MQ=255)

                 gggTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCttt                                                                        <  2:1092253/93‑1 (MQ=255)

                 gggTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTCCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCttt                                                                        <  2:4591153/93‑1 (MQ=255)

                  ggTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCtttt                                                                       <  1:4742043/93‑1 (MQ=255)

                   gTTTAAGTGGTGCTGGTATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTc                                                                      >  1:736295/1‑93 (MQ=255)

                   gTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTc                                                                      >  1:3811704/1‑93 (MQ=255)

                   gTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTc                                                                      <  2:2108320/93‑1 (MQ=255)

                    tttAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCt                                                                     >  1:6010776/1‑93 (MQ=255)

                    tttAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCt                                                                     <  1:1969423/93‑1 (MQ=255)

                     ttAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTCCCGTTTGATGCTAAAAAATCTTTTCTg                                                                    <  2:6209664/93‑1 (MQ=255)

                     ttAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTg                                                                    <  2:5383688/93‑1 (MQ=255)

                      tAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGa                                                                   >  1:1083356/1‑93 (MQ=255)

                       aaGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGaa                                                                  <  1:2839840/93‑1 (MQ=255)

                        aGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAAt                                                                 <  1:10692/93‑1 (MQ=255)

                         gtggtgCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATg                                                                >  1:4612784/1‑93 (MQ=255)

                         gtggtgCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATg                                                                >  1:2649036/1‑93 (MQ=255)

                            gtgCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTaa                                                             <  2:4667973/93‑1 (MQ=255)

                              gCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTaaaa                                                           >  1:6147210/1‑93 (MQ=255)

                               cTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTaaaaa                                                          <  2:3643995/93‑1 (MQ=255)

                               cTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTaaaaa                                                          >  2:2571085/1‑93 (MQ=255)

                                 gATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAg                                                        >  2:2935427/1‑93 (MQ=255)

                                 gATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAg                                                        <  2:42899/93‑1 (MQ=255)

                                 gATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAg                                                        >  1:5742399/1‑93 (MQ=255)

                                  atatTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGc                                                       <  1:122746/93‑1 (MQ=255)

                                   tatTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCt                                                      >  2:4578244/1‑93 (MQ=255)

                                   tatTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCt                                                      >  1:1517662/1‑93 (MQ=255)

                                    atTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTa                                                     >  1:4215550/1‑93 (MQ=255)

                                    atTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTa                                                     <  1:4519948/93‑1 (MQ=255)

                                     tttATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAg                                                    >  2:824966/1‑93 (MQ=255)

                                     tttATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAg                                                    >  2:3033291/1‑93 (MQ=255)

                                     tttATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAg                                                    >  1:321749/1‑93 (MQ=255)

                                     tttATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAg                                                    <  1:1761230/93‑1 (MQ=255)

                                      ttATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGa                                                   <  2:5685329/93‑1 (MQ=255)

                                      ttATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGa                                                   <  2:5596042/93‑1 (MQ=255)

                                      ttATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGa                                                   >  2:2053474/1‑93 (MQ=255)

                                       tataTTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGaa                                                  >  2:4835751/1‑93 (MQ=255)

                                       tataTTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGaa                                                  <  1:272397/93‑1 (MQ=255)

                                         tatTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAAt                                                <  1:462611/93‑1 (MQ=255)

                                            tGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATcac                                             >  1:6129570/1‑93 (MQ=255)

                                             gTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATcaca                                            <  1:6101651/93‑1 (MQ=255)

                                             gTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATcaca                                            <  1:4328454/93‑1 (MQ=255)

                                                tcCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAg                                         >  2:1857323/1‑93 (MQ=255)

                                                tcCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAg                                         >  2:245285/1‑93 (MQ=255)

                                                tcCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAg                                         >  1:2032596/1‑93 (MQ=255)

                                                 ccGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGa                                        <  2:2824218/93‑1 (MQ=255)

                                                    gttgttATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAAc                                     >  1:6286548/1‑93 (MQ=255)

                                                    gttgttATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAAc                                     <  2:443075/93‑1 (MQ=255)

                                                     ttgttATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACt                                    <  2:5111367/93‑1 (MQ=255)

                                                        ttATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTcc                                 >  1:1909266/1‑93 (MQ=255)

                                                        ttATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTcc                                 <  2:2317701/93‑1 (MQ=255)

                                                        ttATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTcc                                 >  1:3377285/1‑93 (MQ=255)

                                                         tATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCa                                >  1:2255187/1‑93 (MQ=255)

                                                            gCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAatg                             <  2:3260241/93‑1 (MQ=255)

                                                             cccTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAatga                            >  1:3960351/1‑93 (MQ=255)

                                                             cccTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAatga                            <  2:4796763/93‑1 (MQ=255)

                                                               cTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAatgatg                          <  1:3910300/93‑1 (MQ=255)

                                                               cTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAatgatg                          <  2:670755/93‑1 (MQ=255)

                                                               cTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAatgatg                          >  2:1718506/1‑93 (MQ=255)

                                                                ttCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATgg                         <  2:399694/93‑1 (MQ=255)

                                                                ttCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATgg                         <  1:5611594/93‑1 (MQ=255)

                                                                 tCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATggg                        >  2:64011/1‑93 (MQ=255)

                                                                  ccAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATgggg                       <  2:4518234/93‑1 (MQ=255)

                                                                  ccAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATgggg                       <  1:5121344/93‑1 (MQ=255)

                                                                  ccAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATgggg                       >  2:1550002/1‑93 (MQ=255)

                                                                    aGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGtt                     <  1:2024510/93‑1 (MQ=255)

                                                                    aGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGtt                     <  2:3521527/93‑1 (MQ=255)

                                                                        ttACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATa                 <  1:1423438/93‑1 (MQ=255)

                                                                        ttACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATa                 <  2:5368262/93‑1 (MQ=255)

                                                                           cTTCGCAATGTACTGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACaa              <  1:3695075/93‑1 (MQ=255)

                                                                            ttCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAg             <  2:525518/93‑1 (MQ=255)

                                                                            ttCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAg             >  1:3060887/1‑93 (MQ=255)

                                                                            ttCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAg             >  1:446420/1‑93 (MQ=255)

                                                                              cGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGt           >  1:1957977/1‑93 (MQ=255)

                                                                              cGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGt           <  1:530067/93‑1 (MQ=255)

                                                                                 aaTGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGTGaa        >  2:5869514/1‑93 (MQ=255)

                                                                                  aTGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGTGAAt       >  2:1053509/1‑93 (MQ=255)

                                                                                   tGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGTGAATc      <  1:2565013/93‑1 (MQ=255)

                                                                                   tGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGTGAATc      <  2:2268638/93‑1 (MQ=255)

                                                                                    gTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGTGAATcc     >  1:5548581/1‑93 (MQ=255)

ATATATAATGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGCTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGTGAATCCGCT  >  NC_000913/2772056‑2772235

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTGATATATAATGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGCTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGTGAATCCGCTGAT  >  NC_000913/2772053‑2772238

TTGATATATAATGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGT                                                                                              <  SRR4302533.2080192/94‑1 (MQ=60)

 TGATATATAATGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTT                                                                                             >  SRR4302533.906021/1‑94 (MQ=60)

  GATATATAATGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTT                                                                                            <  SRR4302533.1071570/94‑1 (MQ=60)

  GATATATAATGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTT                                                                                            <  SRR4302533.4920916/94‑1 (MQ=60)

  GATATATAATGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTT                                                                                            >  SRR4302533.4512734/1‑94 (MQ=60)

  GATATATAATGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTT                                                                                            >  SRR4302533.6182579/1‑94 (MQ=60)

   ATATATAATGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTG                                                                                           >  SRR4302533.55822/1‑94 (MQ=60)

      TATAATGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATG                                                                                        <  SRR4302533.5936619/94‑1 (MQ=60)

      TATAATGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATG                                                                                        <  SRR4302533.3448581/94‑1 (MQ=60)

      TATAATGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATG                                                                                        >  SRR4302533.3966185/1‑94 (MQ=60)

       ATAATGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGC                                                                                       >  SRR4302533.5308453/1‑94 (MQ=60)

        TAATGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCT                                                                                      >  SRR4302533.1413395/1‑94 (MQ=60)

        TAATGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCT                                                                                      <  SRR4302533.971332/94‑1 (MQ=60)

         AATGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTA                                                                                     >  SRR4302533.2952882/1‑94 (MQ=60)

          ATGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAA                                                                                    <  SRR4302533.6268748/94‑1 (MQ=60)

          ATGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAA                                                                                    <  SRR4302533.4144414/94‑1 (MQ=60)

          ATGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAA                                                                                    <  SRR4302533.4036605/94‑1 (MQ=60)

           TGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAA                                                                                   <  SRR4302533.1858133/94‑1 (MQ=60)

           TGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAA                                                                                   >  SRR4302533.5036762/1‑94 (MQ=60)

            GATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAA                                                                                  >  SRR4302533.6053846/1‑94 (MQ=60)

               ACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAAT                                                                               <  SRR4302533.4561006/94‑1 (MQ=60)

                CACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATC                                                                              >  SRR4302533.3412696/1‑94 (MQ=60)

                CACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATC                                                                              >  SRR4302533.5484794/1‑94 (MQ=60)

                CACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATC                                                                              >  SRR4302533.850711/1‑94 (MQ=60)

                 ACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCT                                                                             <  SRR4302533.1181070/94‑1 (MQ=60)

                 ACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCT                                                                             <  SRR4302533.838038/94‑1 (MQ=60)

                 ACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCT                                                                             <  SRR4302533.1536716/94‑1 (MQ=60)

                 ACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCT                                                                             <  SRR4302533.159909/94‑1 (MQ=60)

                  CAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTT                                                                            <  SRR4302533.3620665/94‑1 (MQ=60)

                   AGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTT                                                                           >  SRR4302533.2816398/1‑94 (MQ=60)

                     GGTTTAAGTGGTGCTGGTATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTC                                                                         >  SRR4302533.740626/1‑94 (MQ=60)

                     GGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTC                                                                         >  SRR4302533.3835014/1‑94 (MQ=60)

                     GGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTC                                                                         <  SRR4302533.4770790/94‑1 (MQ=60)

                     GGTTTAAGTGGTGCTGATATTTATATTGTCGCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTC                                                                         <  SRR4302533.1973009/94‑1 (MQ=60)

                      GTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCT                                                                        >  SRR4302533.6047192/1‑94 (MQ=60)

                       TTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTG                                                                       <  SRR4302533.1628391/94‑1 (MQ=60)

                       TTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTG                                                                       <  SRR4302533.1981467/94‑1 (MQ=60)

                       TTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTG                                                                       <  SRR4302533.1086252/94‑1 (MQ=60)

                        TTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGA                                                                      >  SRR4302533.1089746/1‑94 (MQ=60)

                          AAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAAT                                                                    <  SRR4302533.2857317/94‑1 (MQ=60)

                           AGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATG                                                                   <  SRR4302533.10778/94‑1 (MQ=60)

                           AGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATG                                                                   >  SRR4302533.4640729/1‑94 (MQ=60)

                           AGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATG                                                                   >  SRR4302533.2665310/1‑94 (MQ=60)

                            GTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGT                                                                  >  SRR4302533.4649634/1‑94 (MQ=60)

                            GTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGT                                                                  >  SRR4302533.2627304/1‑94 (MQ=60)

                             TGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTA                                                                 <  SRR4302533.3967478/94‑1 (MQ=60)

                                TGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAA                                                              >  SRR4302533.1157894/1‑94 (MQ=60)

                                TGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAA                                                              >  SRR4302533.6184217/1‑94 (MQ=60)

                                  CTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAA                                                            <  SRR4302533.4454353/94‑1 (MQ=60)

                                   TGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAG                                                           >  SRR4302533.5777049/1‑94 (MQ=60)

                                   TGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAG                                                           >  SRR4302533.5615979/1‑94 (MQ=60)

                                   TGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAG                                                           <  SRR4302533.4029395/94‑1 (MQ=60)

                                    GATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGC                                                          >  SRR4302533.3538324/1‑94 (MQ=60)

                                     ATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCT                                                         >  SRR4302533.1526797/1‑94 (MQ=60)

                                     ATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCT                                                         >  SRR4302533.564657/1‑94 (MQ=60)

                                     ATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCT                                                         <  SRR4302533.123519/94‑1 (MQ=60)

                                      TATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTA                                                        <  SRR4302533.6301946/94‑1 (MQ=60)

                                      TATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTA                                                        >  SRR4302533.4241052/1‑94 (MQ=60)

                                       ATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAG                                                       >  SRR4302533.323715/1‑94 (MQ=60)

                                       ATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAG                                                       <  SRR4302533.4979574/94‑1 (MQ=60)

                                       ATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAG                                                       <  SRR4302533.4547320/94‑1 (MQ=60)

                                        TTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGA                                                      <  SRR4302533.1771962/94‑1 (MQ=60)

                                         TTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAA                                                     >  SRR4302533.837550/1‑94 (MQ=60)

                                          TATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAA                                                    <  SRR4302533.274054/94‑1 (MQ=60)

                                           ATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAAT                                                   <  SRR4302533.3075086/94‑1 (MQ=60)

                                            TATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATC                                                  <  SRR4302533.465369/94‑1 (MQ=60)

                                              TTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCAC                                                >  SRR4302533.6166506/1‑94 (MQ=60)

                                                GTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACAC                                              <  SRR4302533.199950/94‑1 (MQ=60)

                                                GTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACAC                                              <  SRR4302533.6138491/94‑1 (MQ=60)

                                                GTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACAC                                              >  SRR4302533.4454292/1‑94 (MQ=60)

                                                GTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACAC                                              <  SRR4302533.4354531/94‑1 (MQ=60)

                                                GTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACAC                                              >  SRR4302533.3345052/1‑94 (MQ=60)

                                                GCCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGGAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACAC                                              <  SRR4302533.4354530/94‑1 (MQ=60)

                                                 TCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACA                                             >  SRR4302533.4597221/1‑94 (MQ=60)

                                                  CTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAG                                            >  SRR4302533.2045136/1‑94 (MQ=60)

                                                   TCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGA                                           <  SRR4302533.3119208/94‑1 (MQ=60)

                                                    CCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAA                                          <  SRR4302533.2092964/94‑1 (MQ=60)

                                                    CCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAA                                          <  SRR4302533.6186657/94‑1 (MQ=60)

                                                     CGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAA                                         >  SRR4302533.311062/1‑94 (MQ=60)

                                                      GGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAAC                                        >  SRR4302533.6324055/1‑94 (MQ=60)

                                                      GGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAAC                                        <  SRR4302533.712776/94‑1 (MQ=60)

                                                      GGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAAC                                        <  SRR4302533.4628430/94‑1 (MQ=60)

                                                        TTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTT                                      <  SRR4302533.1293200/94‑1 (MQ=60)

                                                         TGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTC                                     >  SRR4302533.2704187/1‑94 (MQ=60)

                                                          GTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCC                                    >  SRR4302533.3398136/1‑94 (MQ=60)

                                                          GTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCC                                    >  SRR4302533.1920912/1‑94 (MQ=60)

                                                          GTTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCC                                    >  SRR4302533.1522368/1‑94 (MQ=60)

                                                           TTATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCA                                   >  SRR4302533.2269136/1‑94 (MQ=60)

                                                            TATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAA                                  >  SRR4302533.3634633/1‑94 (MQ=60)

                                                            TATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAA                                  <  SRR4302533.2389064/94‑1 (MQ=60)

                                                            TATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAA                                  >  SRR4302533.1926367/1‑94 (MQ=60)

                                                            TATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAA                                  >  SRR4302533.3634632/1‑94 (MQ=60)

                                                             ATGCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAAT                                 >  SRR4302533.2897062/1‑94 (MQ=60)

                                                               GCCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGA                               >  SRR4302533.3984481/1‑94 (MQ=60)

                                                                CCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGAT                              <  SRR4302533.4553775/94‑1 (MQ=60)

                                                                CCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGAT                              <  SRR4302533.1778939/94‑1 (MQ=60)

                                                                CCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGAT                              >  SRR4302533.1887187/1‑94 (MQ=60)

                                                                CCCTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGAT                              <  SRR4302533.475341/94‑1 (MQ=60)

                                                                  CTTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGG                            <  SRR4302533.3934180/94‑1 (MQ=60)

                                                                   TTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGG                           >  SRR4302533.6164139/1‑94 (MQ=60)

                                                                   TTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGG                           <  SRR4302533.2258276/94‑1 (MQ=60)

                                                                   TTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGG                           <  SRR4302533.3780657/94‑1 (MQ=60)

                                                                   TTCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGG                           <  SRR4302533.5645512/94‑1 (MQ=60)

                                                                    TCCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGG                          <  SRR4302533.5313799/94‑1 (MQ=60)

                                                                     CCAGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGT                         <  SRR4302533.5152286/94‑1 (MQ=60)

                                                                       AGATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTC                       <  SRR4302533.2037010/94‑1 (MQ=60)

                                                                         ATTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCAT                     <  SRR4302533.5121796/94‑1 (MQ=60)

                                                                          TTTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATA                    >  SRR4302533.2043449/1‑94 (MQ=60)

                                                                           TTACTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATAC                   <  SRR4302533.1432049/94‑1 (MQ=60)

                                                                              CTTCGCAATGTACTGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAG                <  SRR4302533.3717771/94‑1 (MQ=60)

                                                                              CTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAG                >  SRR4302533.3079671/1‑94 (MQ=60)

                                                                              CTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAG                >  SRR4302533.449093/1‑94 (MQ=60)

                                                                              CTTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAG                <  SRR4302533.5295263/94‑1 (MQ=60)

                                                                               TTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGG               <  SRR4302533.5958986/94‑1 (MQ=60)

                                                                               TTCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGG               >  SRR4302533.1658054/1‑94 (MQ=60)

                                                                                TCGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGT              >  SRR4302533.1969929/1‑94 (MQ=60)

                                                                                 CGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGTG             <  SRR4302533.6197231/94‑1 (MQ=60)

                                                                                 CGCAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGTG             <  SRR4302533.533221/94‑1 (MQ=60)

                                                                                   CAATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGTGAA           <  SRR4302533.3903907/94‑1 (MQ=60)

                                                                                    AATGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGTGAAT          >  SRR4302533.2744995/1‑94 (MQ=60)

                                                                                      TGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGTGAATCC        >  SRR4302533.5582089/1‑94 (MQ=60)

                                                                                      TGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGTGAATCC        <  SRR4302533.5031380/94‑1 (MQ=60)

                                                                                      TGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGTGAATCC        <  SRR4302533.2580797/94‑1 (MQ=60)

                                                                                      TGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGTGAATCC        >  SRR4302533.1979640/1‑94 (MQ=60)

                                                                                      TGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGTGAATCC        <  SRR4302533.81478/94‑1 (MQ=60)

                                                                                      TGTACCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGTGAATCC        >  SRR4302533.1230028/1‑94 (MQ=60)

                                                                                          CCGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGTGAATCCGCTG    >  SRR4302533.4222902/1‑94 (MQ=60)

                                                                                           CGTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGTGAATCCGCTGA   >  SRR4302533.3978529/1‑94 (MQ=60)

                                                                                            GTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAACTCACACAGAAACTTCCAATGATGGGGTTCATACAAGGTGAATCCGCTGAT  <  SRR4302533.3637267/94‑1 (MQ=60)

                                                                                            GTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGTGAATCCGCTGAT  <  SRR4302533.1969253/94‑1 (MQ=60)

                                                                                            GTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGTGAATCCGCTGAT  >  SRR4302533.2950348/1‑94 (MQ=60)

                                                                                            GTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGTGAATCCGCTGAT  <  SRR4302533.6319363/94‑1 (MQ=60)

                                                                                            GTTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGTGAATCCGCTGAT  <  SRR4302533.750469/94‑1 (MQ=60)

TTGATATATAATGATACACAGGGTTTAAGTGGTGCTGATATTTATATTGTCTCCGGTTGTTATGCCCTTCCAGATTTACTTCGCAATGTACCGCTTGATGCTAAAAAATCTTTTCTGAATGTAAAAAAGCTAGAAATCACACAGAAACTTCCAATGATGGGGTTCATACAAGGTGAATCCGCTGAT  >  NC_000913/2772053‑2772238

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`