Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,781,027	C→G	intergenic (‑151/+58)	ypjA ← / ← b2648	putative ATP‑binding component of a transport system/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,781,027	0	C	G	100.0%	721.1 / NA	235	intergenic (‑151/+58)	ypjA/b2648	putative ATP‑binding component of a transport system/hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (102/133); total (102/133)

Only 100 of 235 total aligned reads displayed.

AACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGA‑GCCGTTGCCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTT  >  NC_000913/2780938‑2781116

aaCGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCa                                                                                         >  2:1262594/1‑93 (MQ=255)

 aCGCAGTGCGCCGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCaa                                                                                        >  1:5017604/1‑93 (MQ=25)

   gCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCaaaa                                                                                      <  2:1603737/93‑1 (MQ=25)

       tGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCaaaataaa                                                                                  <  1:1723093/93‑1 (MQ=255)

         cgcTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCaaaataaaat                                                                                <  2:6209086/93‑1 (MQ=25)

         cgcTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCaaaataaaat                                                                                <  2:2041026/93‑1 (MQ=25)

         cgcTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCaaaataaaat                                                                                <  2:2914097/93‑1 (MQ=25)

            tGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGAt                                                                             <  2:5830319/93‑1 (MQ=255)

            tGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGAt                                                                             <  1:2310506/93‑1 (MQ=25)

            tGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGAt                                                                             >  2:3787251/1‑93 (MQ=255)

             gAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGAtt                                                                            <  2:1241942/93‑1 (MQ=255)

             gAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGAtt                                                                            <  2:3502016/93‑1 (MQ=255)

              aaGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGAttt                                                                           <  2:727093/93‑1 (MQ=37)

                gtgtGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTAc                                                                         <  2:5660656/93‑1 (MQ=255)

                   tgGTTGGATAAAAAAGTCACTCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATa                                                                      >  2:6123588/1‑93 (MQ=37)

                   tgGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTAGATa                                                                      >  2:4854503/1‑93 (MQ=25)

                     gTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAAt                                                                    <  2:4650747/93‑1 (MQ=37)

                     gTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAAt                                                                    >  2:5022338/1‑93 (MQ=255)

                     gTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAAt                                                                    >  2:1048411/1‑93 (MQ=255)

                     gTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAAt                                                                    <  1:5264290/93‑1 (MQ=37)

                     gTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAAt                                                                    <  1:3516295/93‑1 (MQ=255)

                      ttGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATc                                                                   >  1:677372/1‑93 (MQ=255)

                      ttGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATc                                                                   <  1:5242689/93‑1 (MQ=255)

                      ttGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATc                                                                   <  2:865973/93‑1 (MQ=37)

                      ttGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATc                                                                   <  1:3304050/93‑1 (MQ=255)

                       tGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCg                                                                  >  2:1907865/1‑93 (MQ=255)

                         gATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGtt                                                                <  2:109349/93‑1 (MQ=38)

                          aTAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGttt                                                               >  1:3682043/1‑93 (MQ=255)

                           tAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTc                                                              >  2:4177687/1‑93 (MQ=255)

                           tAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTc                                                              >  1:1521816/1‑93 (MQ=255)

                            aaaaaaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCt                                                             <  1:2050681/93‑1 (MQ=255)

                            aaaaaaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCt                                                             <  1:843248/93‑1 (MQ=38)

                              aaaaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtga                                                           <  1:265333/93‑1 (MQ=255)

                               aaaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtgat                                                          >  1:1721182/1‑93 (MQ=255)

                                aaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtgatg                                                         >  1:4554560/1‑93 (MQ=255)

                                aaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtgatg                                                         >  1:6128251/1‑93 (MQ=255)

                                  gTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGaa                                                       >  2:3367547/1‑93 (MQ=255)

                                    cAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGTCAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAata                                                     <  1:4255958/93‑1 (MQ=255)

                                    cAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAata                                                     >  2:447951/1‑93 (MQ=255)

                                    cAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAata                                                     >  1:3802559/1‑93 (MQ=255)

                                     aaTCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAatat                                                    <  1:5458928/93‑1 (MQ=255)

                                         cATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtcttc                                                >  2:4698940/1‑93 (MQ=255)

                                         cATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtcttc                                                >  1:991704/1‑93 (MQ=255)

                                         cATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtcttc                                                <  1:5291905/93‑1 (MQ=255)

                                          aTTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtcttct                                               <  2:252454/93‑1 (MQ=255)

                                           ttCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTg                                              >  1:4844300/1‑93 (MQ=255)

                                           ttCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTg                                              <  2:4926082/93‑1 (MQ=255)

                                            tCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGc                                             <  2:3862026/93‑1 (MQ=255)

                                               ggAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTca                                          >  2:2174623/1‑93 (MQ=255)

                                               ggAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTca                                          <  2:3005685/93‑1 (MQ=255)

                                               ggAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTca                                          >  1:4337889/1‑93 (MQ=255)

                                                  aaTACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACAt                                       >  2:4085697/1‑93 (MQ=18)

                                                   aTACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATa                                      >  1:1261934/1‑93 (MQ=18)

                                                   aTACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATa                                      >  2:1577653/1‑93 (MQ=18)

                                                   aTACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATa                                      >  1:2021628/1‑93 (MQ=255)

                                                    tACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATaa                                     >  2:647704/1‑93 (MQ=18)

                                                    tACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATaa                                     >  1:4698905/1‑93 (MQ=18)

                                                      cGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATaaaa                                   <  2:3939674/93‑1 (MQ=255)

                                                      cGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATaaaa                                   >  2:2288163/1‑93 (MQ=18)

                                                         gCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTCCATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATc                                <  1:3374605/93‑1 (MQ=18)

                                                          cGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATca                               <  2:1216966/93‑1 (MQ=17)

                                                           gTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATcac                              <  1:4731123/93‑1 (MQ=255)

                                                            tATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATcaca                             <  1:3249928/93‑1 (MQ=255)

                                                             aTTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATcacac                            >  1:398614/1‑93 (MQ=18)

                                                                cttttctttCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAAt                         <  1:2864023/93‑1 (MQ=255)

                                                                 ttttctttCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATa                        >  1:3095385/1‑93 (MQ=17)

                                                                  tttctttcGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATaa                       <  2:3754001/93‑1 (MQ=255)

                                                                  tttctttcGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATaa                       <  1:3941913/93‑1 (MQ=255)

                                                                   ttctttcGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAAc                      >  1:2236613/1‑93 (MQ=17)

                                                                   ttctttcGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAAc                      >  1:418287/1‑93 (MQ=17)

                                                                   ttctttcGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAAc                      <  2:5366673/93‑1 (MQ=255)

                                                                    tctttcGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACt                     >  2:4295214/1‑93 (MQ=255)

                                                                     ctttcGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACtt                    <  2:2383404/93‑1 (MQ=255)

                                                                      tttcGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACttt                   <  2:2110603/93‑1 (MQ=17)

                                                                      tttcGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACttt                   <  1:1588418/93‑1 (MQ=17)

                                                                      tttcGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACttt                   <  2:2034592/93‑1 (MQ=255)

                                                                       ttcGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTg                  <  1:5916706/93‑1 (MQ=255)

                                                                        tcGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTga                 <  2:1935172/93‑1 (MQ=255)

                                                                          gACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAANAATCACACAATAACTTTgaga               >  1:2388101/1‑93 (MQ=17)

                                                                          gACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTgaga               <  1:4926032/93‑1 (MQ=255)

                                                                          gACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTgaga               <  2:4593793/93‑1 (MQ=255)

                                                                           aCAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGAt              >  2:3220219/1‑93 (MQ=18)

                                                                           aCAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGAt              <  2:5507851/93‑1 (MQ=255)

                                                                             aaTGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCg            >  1:1071791/1‑93 (MQ=18)

                                                                             aaTGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCg            >  1:5804617/1‑93 (MQ=18)

                                                                             aaTGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCg            <  1:3535328/93‑1 (MQ=255)

                                                                               tgaggCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCa          <  1:2673071/89‑1 (MQ=255)

                                                                               tgaggCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCa          <  2:5273560/89‑1 (MQ=255)

                                                                                 aggCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGa        >  2:5999058/3‑93 (MQ=255)

                                                                                 aggCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGa        <  1:4883953/91‑1 (MQ=255)

                                                                                  ggCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGAt       <  2:2739574/92‑1 (MQ=255)

                                                                                     cGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGt    >  2:4302992/1‑93 (MQ=255)

                                                                                     cGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGt    >  2:2684133/1‑93 (MQ=255)

                                                                                      gTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGtt   <  2:1367353/93‑1 (MQ=255)

                                                                                      gTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGtt   >  1:1944394/1‑93 (MQ=255)

                                                                                      gTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGtt   <  1:2951052/93‑1 (MQ=255)

                                                                                       ttGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGttt  <  1:5712053/93‑1 (MQ=255)

                                                                                       ttGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGttt  >  1:1376258/1‑93 (MQ=255)

                                                                                       ttGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGttt  >  1:1171904/1‑93 (MQ=255)

                                                                                       ttGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGttt  >  1:2157442/1‑93 (MQ=255)

AACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGA‑GCCGTTGCCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTT  >  NC_000913/2780938‑2781116

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGA‑G‑CCGTTGCCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTTACT  >  NC_000913/2780938‑2781120

AACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAA                                                                                            >  SRR4302533.5908177/1‑94 (MQ=60)

AACGCAGTGCGCCGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAA                                                                                            >  SRR4302533.5047998/1‑94 (MQ=60)

   GCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAAT                                                                                         <  SRR4302533.453571/94‑1 (MQ=60)

    CAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATA                                                                                        <  SRR4302533.2185382/94‑1 (MQ=60)

      GTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAA                                                                                      <  SRR4302533.82878/94‑1 (MQ=60)

       TGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAA                                                                                     <  SRR4302533.1733544/94‑1 (MQ=60)

        GCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAAT                                                                                    <  SRR4302533.5034183/94‑1 (MQ=60)

          GCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGA                                                                                  <  SRR4302533.6240804/94‑1 (MQ=60)

          GCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGA                                                                                  <  SRR4302533.2914812/94‑1 (MQ=60)

           CTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATCCGGGCGTATTCTTTTCTTTCGACAATGA‑GTCCGTTGGCAAAATAAAATGAT                                                                                 <  SRR4302533.1304186/94‑1 (MQ=60)

           CTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGAT                                                                                 <  SRR4302533.3107279/94‑1 (MQ=60)

            TGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATT                                                                                <  SRR4302533.2324820/94‑1 (MQ=60)

              AAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTA                                                                              >  SRR4302533.3377003/1‑94 (MQ=60)

               AGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTAC                                                                             <  SRR4302533.2228171/94‑1 (MQ=60)

                  GTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATA                                                                          <  SRR4302533.985142/94‑1 (MQ=60)

                    GGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAAT                                                                        <  SRR4302533.4620800/94‑1 (MQ=60)

                     GTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATC                                                                       <  SRR4302533.5295886/94‑1 (MQ=60)

                     GTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATC                                                                       <  SRR4302533.3537974/94‑1 (MQ=60)

                     GTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATC                                                                       >  SRR4302533.681376/1‑94 (MQ=60)

                      TTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCG                                                                      <  SRR4302533.5274203/94‑1 (MQ=60)

                      TTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCG                                                                      <  SRR4302533.199394/94‑1 (MQ=60)

                      TTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCG                                                                      <  SRR4302533.3324454/94‑1 (MQ=60)

                        GGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTT                                                                    <  SRR4302533.2096431/94‑1 (MQ=60)

                         GATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTT                                                                   <  SRR4302533.5206737/94‑1 (MQ=60)

                         GATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTT                                                                   >  SRR4302533.3704670/1‑94 (MQ=60)

                          ATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTC                                                                  >  SRR4302533.1530978/1‑94 (MQ=60)

                            AAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTG                                                                <  SRR4302533.2063332/94‑1 (MQ=60)

                            AAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTG                                                                <  SRR4302533.848179/94‑1 (MQ=60)

                              AAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGAT                                                              >  SRR4302533.1731620/1‑94 (MQ=60)

                              AAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGAT                                                              >  SRR4302533.4342592/1‑94 (MQ=60)

                              AAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGAT                                                              >  SRR4302533.4814803/1‑94 (MQ=60)

                              AAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGAT                                                              <  SRR4302533.266947/94‑1 (MQ=60)

                               AAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATG                                                             >  SRR4302533.4756535/1‑94 (MQ=60)

                               AAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATG                                                             >  SRR4302533.4582181/1‑94 (MQ=60)

                               AAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATG                                                             >  SRR4302533.6165184/1‑94 (MQ=60)

                                  GTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAAT                                                          <  SRR4302533.3540476/94‑1 (MQ=60)

                                   TCAATCCATTCAGGGAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATA                                                         >  SRR4302533.3414912/1‑94 (MQ=60)

                                   TCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATA                                                         >  SRR4302533.3825828/1‑94 (MQ=60)

                                   TCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATA                                                         <  SRR4302533.3237212/94‑1 (MQ=60)

                                    CAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGTCAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAT                                                        <  SRR4302533.4281617/94‑1 (MQ=60)

                                    CAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAT                                                        >  SRR4302533.4767858/1‑94 (MQ=60)

                                    CAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAT                                                        >  SRR4302533.4962839/1‑94 (MQ=60)

                                     AATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATC                                                       <  SRR4302533.5491815/94‑1 (MQ=60)

                                        CCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTC                                                    >  SRR4302533.997501/1‑94 (MQ=60)

                                        CCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTC                                                    >  SRR4302533.1412105/1‑94 (MQ=60)

                                         CATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCT                                                   <  SRR4302533.5323587/94‑1 (MQ=60)

                                          ATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTG                                                  >  SRR4302533.4873663/1‑94 (MQ=60)

                                          ATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTG                                                  <  SRR4302533.1364811/94‑1 (MQ=60)

                                          ATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTG                                                  <  SRR4302533.4487307/94‑1 (MQ=60)

                                           TTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGC                                                 <  SRR4302533.407573/94‑1 (MQ=60)

                                            TCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCT                                                <  SRR4302533.5429831/94‑1 (MQ=60)

                                              AGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCA                                              >  SRR4302533.4364034/1‑94 (MQ=60)

                                                  AATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATA                                          <  SRR4302533.1594393/94‑1 (MQ=60)

                                                  AATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATA                                          >  SRR4302533.1269480/1‑94 (MQ=60)

                                                  AATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATA                                          >  SRR4302533.2034078/1‑94 (MQ=60)

                                                  AATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATA                                          >  SRR4302533.3688798/1‑94 (MQ=60)

                                                   ATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAA                                         >  SRR4302533.4727389/1‑94 (MQ=60)

                                                   ATACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAA                                         <  SRR4302533.1155776/94‑1 (MQ=60)

                                                    TACGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAA                                        >  SRR4302533.2034613/1‑94 (MQ=60)

                                                      CGGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAA                                      <  SRR4302533.6044399/94‑1 (MQ=60)

                                                       GGGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAAT                                     <  SRR4302533.2929848/94‑1 (MQ=60)

                                                        GGCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATC                                    <  SRR4302533.1731674/94‑1 (MQ=60)

                                                         GCGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTCCATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCA                                   <  SRR4302533.3395442/94‑1 (MQ=60)

                                                          CGTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCAC                                  >  SRR4302533.1652505/1‑94 (MQ=60)

                                                           GTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACA                                 <  SRR4302533.4759807/94‑1 (MQ=60)

                                                           GTATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACA                                 >  SRR4302533.5494772/1‑94 (MQ=60)

                                                            TATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACAC                                >  SRR4302533.401023/1‑94 (MQ=59)

                                                            TATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACAC                                <  SRR4302533.3269967/94‑1 (MQ=59)

                                                            TATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACAC                                <  SRR4302533.1652643/94‑1 (MQ=59)

                                                             ATTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACA                               <  SRR4302533.5290235/94‑1 (MQ=56)

                                                              TTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAA                              >  SRR4302533.4932105/1‑94 (MQ=54)

                                                              TTCTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAA                              <  SRR4302533.3225494/94‑1 (MQ=54)

                                                                CTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATA                            <  SRR4302533.2881638/94‑1 (MQ=49)

                                                                CTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATA                            <  SRR4302533.2340172/94‑1 (MQ=49)

                                                                CTTTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATA                            >  SRR4302533.3114415/1‑94 (MQ=49)

                                                                  TTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAAC                          >  SRR4302533.2250440/1‑94 (MQ=47)

                                                                  TTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAAC                          <  SRR4302533.3965965/94‑1 (MQ=47)

                                                                  TTTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAAC                          >  SRR4302533.420793/1‑94 (MQ=47)

                                                                   TTCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACT                         >  SRR4302533.424429/1‑94 (MQ=47)

                                                                    TCTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTT                        >  SRR4302533.3308143/1‑94 (MQ=47)

                                                                     CTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTT                       <  SRR4302533.6151559/94‑1 (MQ=49)

                                                                     CTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTT                       >  SRR4302533.2416688/1‑94 (MQ=49)

                                                                     CTTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTT                       <  SRR4302533.2255312/94‑1 (MQ=49)

                                                                      TTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTG                      <  SRR4302533.3937602/94‑1 (MQ=52)

                                                                      TTTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTG                      <  SRR4302533.1598021/94‑1 (MQ=52)

                                                                       TTCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGA                     <  SRR4302533.5952465/94‑1 (MQ=54)

                                                                        TCGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAG                    <  SRR4302533.528346/94‑1 (MQ=56)

                                                                         CGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAANAATCACACAATAACTTTGAGA                   >  SRR4302533.2402855/1‑94 (MQ=60)

                                                                         CGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGA                   <  SRR4302533.4100676/94‑1 (MQ=59)

                                                                         CGACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGA                   >  SRR4302533.1958578/1‑94 (MQ=59)

                                                                          GACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGAT                  >  SRR4302533.3793823/1‑94 (MQ=60)

                                                                          GACAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGAT                  <  SRR4302533.4955865/94‑1 (MQ=60)

                                                                            CAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCG                >  SRR4302533.5839671/1‑94 (MQ=60)

                                                                            CAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCG                >  SRR4302533.5830229/1‑94 (MQ=60)

                                                                            CAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCG                >  SRR4302533.1078106/1‑94 (MQ=60)

                                                                            CAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCG                >  SRR4302533.4889194/1‑94 (MQ=60)

                                                                            CAATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAACAACTTTGAGATCG                <  SRR4302533.3426162/94‑1 (MQ=60)

                                                                             AATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGC               <  SRR4302533.3557114/94‑1 (MQ=60)

                                                                             AATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGC               >  SRR4302533.12621/1‑94 (MQ=60)

                                                                              ATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCA              >  SRR4302533.3976718/1‑94 (MQ=60)

                                                                              ATGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCA              <  SRR4302533.4620250/94‑1 (MQ=60)

                                                                               TGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAG             <  SRR4302533.2689468/94‑1 (MQ=60)

                                                                               TGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAG             <  SRR4302533.2423038/94‑1 (MQ=60)

                                                                               TGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAG             <  SRR4302533.1840806/94‑1 (MQ=60)

                                                                               TGAGG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAG             <  SRR4302533.5315663/94‑1 (MQ=60)

                                                                                 agG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGAT           <  SRR4302533.5592837/92‑1 (MQ=60)

                                                                                 agG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGAT           >  SRR4302533.950886/3‑94 (MQ=60)

                                                                                 agG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGAT           <  SRR4302533.4913545/92‑1 (MQ=60)

                                                                                 agG‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGAT           <  SRR4302533.1265553/92‑1 (MQ=60)

                                                                                   G‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTG         >  SRR4302533.2677381/1‑94 (MQ=60)

                                                                                   G‑CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTG         <  SRR4302533.2812051/94‑1 (MQ=60)

                                                                                      CGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTT       >  SRR4302533.1956253/1‑94 (MQ=60)

                                                                                       GTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTT      >  SRR4302533.2170724/1‑94 (MQ=60)

                                                                                       GTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTT      >  SRR4302533.1178940/1‑94 (MQ=60)

                                                                                       GTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTT      >  SRR4302533.1384539/1‑94 (MQ=60)

                                                                                       GTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTT      <  SRR4302533.2969100/94‑1 (MQ=60)

                                                                                       GTTGGCAAAATAAAATGATCTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTT      >  SRR4302533.3780099/1‑94 (MQ=60)

                                                                                        TTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTT     <  SRR4302533.5746558/94‑1 (MQ=60)

                                                                                        TTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTT     >  SRR4302533.4808743/1‑94 (MQ=60)

                                                                                           GCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTTACT  <  SRR4302533.6123166/94‑1 (MQ=60)

                                                                                           GCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTTACT  <  SRR4302533.1892670/94‑1 (MQ=60)

                                                                                           GCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTTACT  <  SRR4302533.514834/94‑1 (MQ=60)

AACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGA‑G‑CCGTTGCCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTTACT  >  NC_000913/2780938‑2781120

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`