Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,806,271 T→C intergenic (+126/‑1367) proX → / → b2682 high‑affinity transport system for glycine betaine and proline/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,806,2710TC100.0% 737.2 / NA 224intergenic (+126/‑1367)proX/b2682high‑affinity transport system for glycine betaine and proline/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (102/122);  total (102/122)

Only 100 of 230 total aligned reads displayed.

CCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGAGCTT  >  NC_000913/2806181‑2806360
                                                                                          |                                                                                         
ccgccgTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCAccc                                                                                         >  1:3491629/1‑93 (MQ=255)
ccgccgTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCAccc                                                                                         <  1:2675114/93‑1 (MQ=255)
   ccgTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCat                                                                                      >  1:1155141/1‑93 (MQ=255)
   ccgTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCat                                                                                      <  1:5351273/93‑1 (MQ=255)
   ccgTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCat                                                                                      >  1:767657/1‑93 (MQ=255)
    cgTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCata                                                                                     >  2:2213910/1‑93 (MQ=255)
    cgTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCata                                                                                     <  1:6260226/93‑1 (MQ=255)
    cgTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCata                                                                                     <  1:6146613/93‑1 (MQ=255)
      ttNTGTGCACAATGCCTGATGCNACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATAtt                                                                                   <  1:4826456/93‑1 (MQ=255)
      ttCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATAtt                                                                                   >  2:1591819/1‑93 (MQ=255)
      ttCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATAtt                                                                                   <  2:3831868/93‑1 (MQ=255)
      ttCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATAtt                                                                                   >  1:5560629/1‑93 (MQ=255)
      ttCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATAtt                                                                                   <  2:5000135/93‑1 (MQ=255)
      ttCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATAtt                                                                                   >  1:474692/1‑93 (MQ=255)
            gCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCaa                                                                             >  1:5403238/1‑93 (MQ=255)
              acaATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACa                                                                           <  1:3964813/93‑1 (MQ=255)
               caATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACAt                                                                          <  2:837378/93‑1 (MQ=255)
                aaTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATc                                                                         <  1:2340359/93‑1 (MQ=255)
                aaTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATc                                                                         >  1:5111292/1‑93 (MQ=255)
                aaTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATc                                                                         >  1:4159767/1‑93 (MQ=255)
                  tGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCg                                                                       <  2:1778315/93‑1 (MQ=255)
                   gCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGc                                                                      <  1:3705436/93‑1 (MQ=255)
                   gCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGc                                                                      <  1:6242723/93‑1 (MQ=255)
                     cTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCCACATCCGCta                                                                    >  2:2110930/1‑93 (MQ=255)
                      tGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCtat                                                                   <  1:585381/93‑1 (MQ=255)
                       gATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCtatt                                                                  <  2:3446269/93‑1 (MQ=255)
                       gATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCtatt                                                                  >  1:1612100/1‑93 (MQ=255)
                         tGCGACGCTGGCGCGTCTTATCATGGCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCtattat                                                                >  2:305274/1‑93 (MQ=255)
                         tGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCtattat                                                                <  1:1236382/93‑1 (MQ=255)
                         tGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCtattat                                                                >  1:2231801/1‑93 (MQ=255)
                         tGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCtattat                                                                <  1:2728037/93‑1 (MQ=255)
                          gCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTattatt                                                               <  2:2735748/93‑1 (MQ=255)
                             aCGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGAt                                                            >  2:1055972/1‑93 (MQ=255)
                             aCGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGAt                                                            >  1:1127563/1‑93 (MQ=255)
                              cGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGAtt                                                           >  1:3925723/1‑93 (MQ=255)
                               gCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGAttt                                                          <  1:611205/93‑1 (MQ=255)
                                cTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTc                                                         <  2:2812087/93‑1 (MQ=255)
                                  ggCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCa                                                       <  1:5792172/93‑1 (MQ=255)
                                   gcgcGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAg                                                      <  2:577206/93‑1 (MQ=255)
                                    cgcgTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGc                                                     <  1:431436/93‑1 (MQ=255)
                                     gcgTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCt                                                    >  1:4272289/1‑93 (MQ=255)
                                     gcgTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCt                                                    <  1:3158706/93‑1 (MQ=255)
                                         cTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAat                                                <  2:3144606/93‑1 (MQ=255)
                                           tATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAatca                                              <  2:4245823/93‑1 (MQ=255)
                                            aTCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAatcat                                             >  2:1724533/1‑93 (MQ=255)
                                             tCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAatcatc                                            >  1:1547501/1‑93 (MQ=255)
                                               aTGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCAc                                          >  1:1754003/1‑93 (MQ=255)
                                                tGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCAcc                                         >  2:2954723/1‑93 (MQ=255)
                                                tGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCAcc                                         >  1:1828963/1‑93 (MQ=255)
                                                 gCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCt                                        >  2:4960791/1‑93 (MQ=255)
                                                 gCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCt                                        <  1:1277867/93‑1 (MQ=255)
                                                 gCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCt                                        <  2:59726/93‑1 (MQ=255)
                                                  ccTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCtg                                       >  1:64925/1‑93 (MQ=255)
                                                  ccTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCtg                                       >  2:1845403/1‑93 (MQ=255)
                                                   cTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCtga                                      <  2:2465127/93‑1 (MQ=255)
                                                   cTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCtga                                      <  1:169675/93‑1 (MQ=255)
                                                    tACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCtgat                                     >  2:2606713/1‑93 (MQ=255)
                                                    tACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCtgat                                     <  1:5622000/93‑1 (MQ=255)
                                                    tACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCtgat                                     <  2:5466361/93‑1 (MQ=255)
                                                      cAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCtgatga                                   >  1:2263410/1‑93 (MQ=255)
                                                      cAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCtgatga                                   >  1:4643826/1‑93 (MQ=255)
                                                       aaaCCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGaa                                  >  1:5512996/1‑93 (MQ=255)
                                                        aaCCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAAc                                 >  1:4530751/1‑93 (MQ=255)
                                                        aaCCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAAc                                 >  1:5604476/1‑93 (MQ=255)
                                                         aCCACATCGCACATTTCAACAATCTATCTTTCGCCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACa                                <  1:4674682/93‑1 (MQ=255)
                                                         aCCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACa                                >  2:5596836/1‑93 (MQ=255)
                                                         aCCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTAAATCATCACCCGATGAACa                                <  2:6160126/93‑1 (MQ=255)
                                                           cacaTCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACaaa                              <  2:3639690/93‑1 (MQ=255)
                                                            acaTCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACaaaa                             >  2:4472229/1‑93 (MQ=255)
                                                            acaTCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGATTAATCATCACCTGATGAACaaaa                             >  1:447443/1‑93 (MQ=255)
                                                               tCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAaata                          <  1:2789022/93‑1 (MQ=255)
                                                                cGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAaataa                         >  2:1906753/1‑93 (MQ=255)
                                                                 gCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAaataat                        <  2:5752364/93‑1 (MQ=255)
                                                                 gCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAaataat                        >  2:4213606/1‑93 (MQ=255)
                                                                  cacaTTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATg                       >  2:5156910/1‑93 (MQ=255)
                                                                   acaTTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGa                      >  2:3392826/1‑93 (MQ=255)
                                                                   acaTTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGa                      <  2:1349632/93‑1 (MQ=255)
                                                                   acaTTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGa                      <  2:3786917/93‑1 (MQ=255)
                                                                   acaTTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGa                      <  2:4632418/93‑1 (MQ=255)
                                                                    caTTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGAc                     >  2:2300799/1‑93 (MQ=255)
                                                                    caTTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGAc                     >  2:6028446/1‑93 (MQ=255)
                                                                    caTTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGAc                     <  2:1220161/93‑1 (MQ=255)
                                                                    caTTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGAc                     <  2:5385751/93‑1 (MQ=255)
                                                                    caTTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGAc                     <  1:1927337/93‑1 (MQ=255)
                                                                    caTTTCAACAATCTATCTTTCACCCCATATTCATAAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGat                     >  2:627192/1‑92 (MQ=255)
                                                                        tCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTaaa                 >  1:3312185/1‑93 (MQ=255)
                                                                        tCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTaaa                 >  1:572134/1‑93 (MQ=255)
                                                                          aacaaTCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAAcc               >  2:1147257/1‑93 (MQ=255)
                                                                            caaTCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTa             >  1:563192/1‑93 (MQ=255)
                                                                             tatctatctTTCACCGCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTaa            <  1:2139108/92‑1 (MQ=255)
                                                                             aaTCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTaa            <  1:1482241/93‑1 (MQ=255)
                                                                                ctatctTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCa         <  1:2414920/93‑1 (MQ=255)
                                                                                ctatctTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCa         <  2:4766533/93‑1 (MQ=255)
                                                                                ctatctTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCa         <  2:1388648/93‑1 (MQ=255)
                                                                                 tatctTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCAt        >  2:5398796/1‑93 (MQ=255)
                                                                                  atctTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATg       <  1:5951410/93‑1 (MQ=255)
                                                                                   tctTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGa      <  1:4335894/93‑1 (MQ=255)
                                                                                     tttCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGAGc    <  2:3119194/93‑1 (MQ=255)
                                                                                       tCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGAGCtt  <  1:2602263/93‑1 (MQ=255)
                                                                                       tCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGAGCtt  <  2:885184/93‑1 (MQ=255)
                                                                                          |                                                                                         
CCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGAGCTT  >  NC_000913/2806181‑2806360

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGAGCTTAGCC  >  NC_000913/2806178‑2806364
                                                                                             |                                                                                             
CATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCAC                                                                                               >  SRR4302533.2934306/1‑94 (MQ=60)
CATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCAAATTTCAACAATCTATCTTTCAC                                                                                               >  SRR4302533.5344625/1‑94 (MQ=60)
 ATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACC                                                                                              <  SRR4302533.4268430/94‑1 (MQ=60)
  TCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCC                                                                                             >  SRR4302533.3513163/1‑94 (MQ=60)
   CCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCC                                                                                            <  SRR4302533.2691523/94‑1 (MQ=60)
     GCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCAT                                                                                          >  SRR4302533.1162070/1‑94 (MQ=60)
     GCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCAT                                                                                          >  SRR4302533.772186/1‑94 (MQ=60)
      CCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATA                                                                                         <  SRR4302533.5383383/94‑1 (MQ=60)
      CCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATA                                                                                         >  SRR4302533.3939769/1‑94 (MQ=60)
       CGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATAT                                                                                        <  SRR4302533.6297653/94‑1 (MQ=60)
       CGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATAT                                                                                        <  SRR4302533.6183618/94‑1 (MQ=60)
        GTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATT                                                                                       >  SRR4302533.477528/1‑94 (MQ=60)
        GTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATT                                                                                       <  SRR4302533.3870644/94‑1 (MQ=60)
        GTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATT                                                                                       >  SRR4302533.5594234/1‑94 (MQ=60)
         TTNTGTGCACAATGCCTGATGCNACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTC                                                                                      <  SRR4302533.4855703/94‑1 (MQ=60)
         TTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATTGCACATTTCAACAATCTATCTTTCACCCCATATTC                                                                                      >  SRR4302533.24542/1‑94 (MQ=60)
          TCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCA                                                                                     >  SRR4302533.1865370/1‑94 (MQ=60)
             GTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCA                                                                                  <  SRR4302533.5886199/94‑1 (MQ=60)
              TGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAA                                                                                 >  SRR4302533.5435705/1‑94 (MQ=60)
                 ACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACAT                                                                              >  SRR4302533.661602/1‑94 (MQ=60)
                 ACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACAT                                                                              <  SRR4302533.3988966/94‑1 (MQ=60)
                 ACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACAT                                                                              <  SRR4302533.1887519/94‑1 (MQ=60)
                 ACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACAT                                                                              >  SRR4302533.2262306/1‑94 (MQ=60)
                  CAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATC                                                                             >  SRR4302533.120728/1‑94 (MQ=60)
                  CAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATC                                                                             <  SRR4302533.6285443/94‑1 (MQ=60)
                  CAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATC                                                                             >  SRR4302533.4184979/1‑94 (MQ=60)
                  CAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATC                                                                             >  SRR4302533.5142184/1‑94 (MQ=60)
                   AATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCC                                                                            <  SRR4302533.1598752/94‑1 (MQ=60)
                   AATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCC                                                                            <  SRR4302533.2354850/94‑1 (MQ=60)
                     TGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGC                                                                          >  SRR4302533.5962012/1‑94 (MQ=60)
                      GCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCT                                                                         <  SRR4302533.81816/94‑1 (MQ=60)
                      GCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCT                                                                         <  SRR4302533.2707016/94‑1 (MQ=60)
                      GCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCT                                                                         <  SRR4302533.6280094/94‑1 (MQ=60)
                      GCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCT                                                                         <  SRR4302533.3728196/94‑1 (MQ=60)
                      GCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCT                                                                         <  SRR4302533.1159392/94‑1 (MQ=60)
                       CCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTA                                                                        <  SRR4302533.1812609/94‑1 (MQ=60)
                       CCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTA                                                                        <  SRR4302533.1710050/94‑1 (MQ=60)
                        CTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTAT                                                                       <  SRR4302533.6270029/94‑1 (MQ=60)
                         TGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATT                                                                      <  SRR4302533.588832/94‑1 (MQ=60)
                         TGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATT                                                                      >  SRR4302533.1621875/1‑94 (MQ=60)
                           ATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTAT                                                                    >  SRR4302533.2245571/1‑94 (MQ=60)
                            TGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATT                                                                   <  SRR4302533.2744772/94‑1 (MQ=60)
                            TGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATT                                                                   <  SRR4302533.6010647/94‑1 (MQ=60)
                            TGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATT                                                                   <  SRR4302533.1243770/94‑1 (MQ=60)
                            TGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATT                                                                   >  SRR4302533.5346653/1‑94 (MQ=60)
                            TGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATT                                                                   <  SRR4302533.5393473/94‑1 (MQ=60)
                            TGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATT                                                                   <  SRR4302533.1674456/94‑1 (MQ=60)
                              CGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGA                                                                 <  SRR4302533.2752177/94‑1 (MQ=60)
                               GACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGAT                                                                >  SRR4302533.1134263/1‑94 (MQ=60)
                               GACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGAT                                                                >  SRR4302533.1465710/1‑94 (MQ=60)
                                ACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATT                                                               >  SRR4302533.3949693/1‑94 (MQ=60)
                                 CGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTT                                                              >  SRR4302533.1000949/1‑94 (MQ=60)
                                  GCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTC                                                             <  SRR4302533.614799/94‑1 (MQ=60)
                                     GGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAG                                                          <  SRR4302533.5827163/94‑1 (MQ=60)
                                     GGCCCGTCTTATCATGCGTACAAACCACATGGTACATTTCAACAATCTATCTTTCACCCCAGATTCATCAACACCCGCTATTATTGATTTCCAG                                                          <  SRR4302533.1392025/94‑1 (MQ=60)
                                       CGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCT                                                        <  SRR4302533.434008/94‑1 (MQ=60)
                                       CGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCT                                                        >  SRR4302533.4298002/1‑94 (MQ=60)
                                        GCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTT                                                       <  SRR4302533.3178144/94‑1 (MQ=60)
                                        GCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTT                                                       <  SRR4302533.4697037/94‑1 (MQ=60)
                                           TCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAAT                                                    <  SRR4302533.4299209/94‑1 (MQ=60)
                                            CTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATC                                                   <  SRR4302533.6340324/94‑1 (MQ=60)
                                             TTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCA                                                  <  SRR4302533.2870728/94‑1 (MQ=60)
                                              TATCATGCGTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCAT                                                 <  SRR4302533.5640531/94‑1 (MQ=60)
                                              TATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCAT                                                 <  SRR4302533.4756106/94‑1 (MQ=60)
                                              TATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCAT                                                 <  SRR4302533.1514461/94‑1 (MQ=60)
                                               ATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATC                                                >  SRR4302533.1556826/1‑94 (MQ=60)
                                               ATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATC                                                <  SRR4302533.5686216/94‑1 (MQ=60)
                                               ATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATC                                                <  SRR4302533.572046/94‑1 (MQ=60)
                                                 CATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCAC                                              >  SRR4302533.1764687/1‑94 (MQ=60)
                                                  ATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACC                                             >  SRR4302533.1840131/1‑94 (MQ=60)
                                                   TGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCT                                            <  SRR4302533.2624800/94‑1 (MQ=60)
                                                   TGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCT                                            >  SRR4302533.2293932/1‑94 (MQ=60)
                                                    GCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTG                                           <  SRR4302533.1285547/94‑1 (MQ=60)
                                                    GCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTG                                           >  SRR4302533.65345/1‑94 (MQ=60)
                                                      CTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGAT                                         <  SRR4302533.170746/94‑1 (MQ=60)
                                                      CTACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGAT                                         >  SRR4302533.2666076/1‑94 (MQ=60)
                                                       TACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATG                                        <  SRR4302533.5655982/94‑1 (MQ=60)
                                                        ACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGA                                       <  SRR4302533.1642941/94‑1 (MQ=60)
                                                        ACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGA                                       >  SRR4302533.2277415/1‑94 (MQ=60)
                                                        ACAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGA                                       >  SRR4302533.4671959/1‑94 (MQ=60)
                                                         CAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAA                                      >  SRR4302533.5546276/1‑94 (MQ=60)
                                                         CAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAA                                      <  SRR4302533.3163887/94‑1 (MQ=60)
                                                         CAAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAA                                      <  SRR4302533.5600946/94‑1 (MQ=60)
                                                          AAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAAC                                     >  SRR4302533.5638338/1‑94 (MQ=60)
                                                          AAACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAAC                                     >  SRR4302533.4558186/1‑94 (MQ=60)
                                                            ACCACATCGCACATTTCAACAATCTATCTTTCGCCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAA                                   <  SRR4302533.4703008/94‑1 (MQ=60)
                                                            ACCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAA                                   >  SRR4302533.5781864/1‑94 (MQ=60)
                                                             CCACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAA                                  >  SRR4302533.2173138/1‑94 (MQ=60)
                                                              CACATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGATTAATCATCACCTGATGAACAAAA                                 >  SRR4302533.450119/1‑94 (MQ=60)
                                                               CCATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAA                                <  SRR4302533.5448080/94‑1 (MQ=60)
                                                                 ATCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATA                              <  SRR4302533.5584575/94‑1 (MQ=60)
                                                                  TCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAA                             <  SRR4302533.2806167/94‑1 (MQ=60)
                                                                  TCGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAA                             >  SRR4302533.3386965/1‑94 (MQ=60)
                                                                   CGCACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAAT                            >  SRR4302533.434692/1‑94 (MQ=60)
                                                                     CACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGA                          <  SRR4302533.441475/94‑1 (MQ=60)
                                                                     CACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGA                          <  SRR4302533.5661536/94‑1 (MQ=60)
                                                                     CACATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGA                          <  SRR4302533.2346906/94‑1 (MQ=60)
                                                                      CCATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGAC                         <  SRR4302533.4225833/94‑1 (MQ=60)
                                                                       CATTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACT                        <  SRR4302533.1939098/94‑1 (MQ=60)
                                                                         TTTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAA                      <  SRR4302533.6171410/94‑1 (MQ=60)
                                                                          TTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAA                     >  SRR4302533.3332640/1‑94 (MQ=60)
                                                                          TTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAA                     <  SRR4302533.3314614/94‑1 (MQ=60)
                                                                          TTCAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAA                     >  SRR4302533.575511/1‑94 (MQ=60)
                                                                            CAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACC                   >  SRR4302533.6233/1‑94 (MQ=60)
                                                                            CAACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACC                   >  SRR4302533.4158003/1‑94 (MQ=60)
                                                                              ACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTA                 >  SRR4302533.566530/1‑94 (MQ=60)
                                                                              ACAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTA                 <  SRR4302533.1271/94‑1 (MQ=60)
                                                                               CAATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAA                >  SRR4302533.4656285/1‑94 (MQ=60)
                                                                                TATCTATCTTTCACCGCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAAT               <  SRR4302533.2152293/94‑1 (MQ=60)
                                                                                AATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAAT               <  SRR4302533.1491189/94‑1 (MQ=60)
                                                                                AATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAAT               <  SRR4302533.3952541/94‑1 (MQ=60)
                                                                                AATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAAT               <  SRR4302533.241470/94‑1 (MQ=60)
                                                                                AATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAAT               <  SRR4302533.5567134/94‑1 (MQ=60)
                                                                                 ATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATC              >  SRR4302533.5892483/1‑94 (MQ=60)
                                                                                 ATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATC              >  SRR4302533.4487272/1‑94 (MQ=60)
                                                                                 ATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATC              <  SRR4302533.3546151/94‑1 (MQ=60)
                                                                                 ATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATC              >  SRR4302533.4885209/1‑94 (MQ=60)
                                                                                 ATCTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATC              <  SRR4302533.129417/94‑1 (MQ=60)
                                                                                   CTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCAT            >  SRR4302533.4220363/1‑94 (MQ=60)
                                                                                   CTATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCAT            <  SRR4302533.2429838/94‑1 (MQ=60)
                                                                                    TATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATG           >  SRR4302533.5243255/1‑94 (MQ=60)
                                                                                     ATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGA          <  SRR4302533.5987407/94‑1 (MQ=60)
                                                                                     ATCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGA          >  SRR4302533.4514264/1‑94 (MQ=60)
                                                                                      TCTTTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGAG         <  SRR4302533.4362023/94‑1 (MQ=60)
                                                                                         TTCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGAGCTT      >  SRR4302533.2006275/1‑94 (MQ=60)
                                                                                          TCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGAGCTTA     <  SRR4302533.2618254/94‑1 (MQ=60)
                                                                                          TCACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGAGCTTA     <  SRR4302533.4829601/94‑1 (MQ=60)
                                                                                           CACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGAGCTTAG    <  SRR4302533.1247797/94‑1 (MQ=60)
                                                                                            ACCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGAGCTTAGC   >  SRR4302533.5346540/1‑94 (MQ=60)
                                                                                             CCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGAGCTTAGCC  >  SRR4302533.5558100/1‑94 (MQ=60)
                                                                                             |                                                                                             
CATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAACCTAATCATGAGCTTAGCC  >  NC_000913/2806178‑2806364

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑