Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,918,923	C→T	T400T (ACG→ACA)	b2789 ←	putative transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,918,923	0	C	T	100.0%	870.6 / NA	237	T400T (ACG→ACA)	b2789	putative transport protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (108/129); total (108/129)

Only 100 of 240 total aligned reads displayed.

CAGTACCGCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGCGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCCATTACTGC  >  NC_000913/2918833‑2919012

  gTACCGCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGa                                                                                       <  1:4425168/93‑1 (MQ=255)

   tACCGCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGAc                                                                                      <  1:4937424/93‑1 (MQ=255)

   tACCGCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGAc                                                                                      <  1:2968507/93‑1 (MQ=255)

    aCCGCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACg                                                                                     >  2:4120755/1‑93 (MQ=255)

     ccGCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGa                                                                                    >  2:4713483/1‑93 (MQ=255)

     ccGCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGa                                                                                    <  1:74513/93‑1 (MQ=255)

     ccGCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGa                                                                                    >  2:1100728/1‑93 (MQ=255)

      cgcgATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGAt                                                                                   <  1:606643/93‑1 (MQ=255)

      cgcgATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGAt                                                                                   <  2:1657031/93‑1 (MQ=255)

            tAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGa                                                                             >  1:5100744/1‑93 (MQ=255)

              aGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGaaa                                                                           <  1:613469/93‑1 (MQ=255)

              aGGCATGAACACCAACATAAACCAGCGCCCCATTAACCGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGaaa                                                                           <  1:4642657/93‑1 (MQ=255)

                  aTGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGtt                                                                       >  2:1032685/1‑93 (MQ=255)

                  aTGAACACCAACAAAAATCAGCGCCCTATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGtt                                                                       <  1:5237375/93‑1 (MQ=255)

                   tGAACACCAACAAAAATCAGCCCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTa                                                                      <  2:1300133/93‑1 (MQ=255)

                        acCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGaa                                                                 >  2:4656382/1‑93 (MQ=255)

                        acCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGaa                                                                 <  2:730933/93‑1 (MQ=255)

                         ccAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAAc                                                                >  2:3628006/1‑93 (MQ=255)

                          cAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACa                                                               >  1:1723388/1‑93 (MQ=255)

                          cAACATAAATCAGCCCCCCATAAATCGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACa                                                               <  2:2004575/93‑1 (MQ=255)

                           aaaaTAAATCAGCGCCCCATGAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACAt                                                              <  1:503435/90‑1 (MQ=255)

                           aaCATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACAt                                                              >  1:2329295/1‑93 (MQ=255)

                           aaCATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACAt                                                              <  1:3945097/93‑1 (MQ=255)

                            aCATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATg                                                             >  2:2713083/1‑93 (MQ=255)

                             cATAAATCAGCGCCCCATTAAGCGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGt                                                            <  2:3416207/93‑1 (MQ=255)

                             cATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGt                                                            >  2:1759412/1‑93 (MQ=255)

                             cATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGt                                                            <  1:302823/93‑1 (MQ=255)

                             cATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGt                                                            >  1:6309254/1‑93 (MQ=255)

                             cATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGt                                                            <  1:4503823/93‑1 (MQ=255)

                             aaTAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGt                                                            <  1:1187391/92‑1 (MQ=255)

                              aTAAATCAGCGCCCCATAAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGtt                                                           <  2:1219175/93‑1 (MQ=255)

                                aaaTCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGa                                                         >  2:5982906/1‑93 (MQ=255)

                                 aaTCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGaa                                                        >  2:435473/1‑93 (MQ=255)

                                  aTCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAAc                                                       >  1:1531416/1‑93 (MQ=255)

                                   tCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACa                                                      >  1:5201430/1‑93 (MQ=255)

                                   tCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACa                                                      <  2:1883604/93‑1 (MQ=255)

                                     aGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAgg                                                    >  1:1467761/1‑93 (MQ=255)

                                     aGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAgg                                                    <  1:3296012/93‑1 (MQ=255)

                                     aGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAgg                                                    <  1:6101997/93‑1 (MQ=255)

                                      gcgcCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGc                                                   >  2:5614576/1‑93 (MQ=255)

                                      gcgcCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGc                                                   >  1:2922444/1‑93 (MQ=255)

                                       cgcCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGcc                                                  <  1:5780725/93‑1 (MQ=255)

                                       cgcCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGcc                                                  <  1:2644044/93‑1 (MQ=255)

                                       cgcCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGca                                                  >  2:5656030/1‑92 (MQ=255)

                                        gcCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCa                                                 >  1:3154865/1‑93 (MQ=255)

                                         ccccATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCAc                                                >  2:1342372/1‑93 (MQ=255)

                                         ccccATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCAc                                                <  2:5160728/93‑1 (MQ=255)

                                          cccATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGACAcc                                               >  1:168817/1‑93 (MQ=255)

                                          cccATAAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCAcc                                               <  1:3796538/93‑1 (MQ=255)

                                           ccATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCg                                              >  2:311091/1‑93 (MQ=255)

                                           ccATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCg                                              <  2:634600/93‑1 (MQ=255)

                                            cATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCgg                                             >  2:144796/1‑93 (MQ=255)

                                            cATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCgg                                             >  2:3010560/1‑93 (MQ=255)

                                             ataaaaCGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGa                                            <  2:5917461/90‑1 (MQ=255)

                                             aTTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGa                                            <  1:4868239/93‑1 (MQ=255)

                                             aTTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGa                                            >  1:3634489/1‑93 (MQ=255)

                                              ttAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGaa                                           >  1:5280919/1‑93 (MQ=255)

                                              ttAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGACACCGGaa                                           >  2:4293536/1‑93 (MQ=255)

                                                 aaCGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGa                                        >  1:3493132/1‑93 (MQ=255)

                                                 aaCGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGa                                        <  2:1951655/93‑1 (MQ=255)

                                                  aCGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGAc                                       <  1:739144/93‑1 (MQ=255)

                                                  aCGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGAc                                       <  1:2151134/93‑1 (MQ=255)

                                                  aCGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGAc                                       <  1:990946/93‑1 (MQ=255)

                                                  aCGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGAc                                       <  2:4938364/93‑1 (MQ=255)

                                                   cGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGAcc                                      <  2:3448324/93‑1 (MQ=255)

                                                    gAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCTCCGGAAAGACCg                                     <  2:852396/93‑1 (MQ=255)

                                                    gAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCg                                     <  1:5869187/93‑1 (MQ=255)

                                                       ccAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTg                                  >  1:3253969/1‑93 (MQ=255)

                                                        cAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGa                                 >  2:2268548/1‑93 (MQ=255)

                                                          gTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGAtc                               <  2:476392/93‑1 (MQ=255)

                                                          gTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGCTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGAtc                               >  1:1033358/1‑93 (MQ=255)

                                                            cGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGAtctc                             <  1:2358237/93‑1 (MQ=255)

                                                                ccAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCtttt                         <  2:2141550/93‑1 (MQ=255)

                                                                ccAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCtttt                         <  2:6037980/93‑1 (MQ=255)

                                                                 cAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTg                        >  1:1335337/1‑93 (MQ=255)

                                                                  aaCGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTgg                       >  2:2413919/1‑93 (MQ=255)

                                                                  aaCGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTgg                       <  2:171707/93‑1 (MQ=255)

                                                                   aCGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGgc                      <  2:3805449/93‑1 (MQ=255)

                                                                   aCGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGgc                      >  2:1492265/1‑93 (MQ=255)

                                                                     gATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGgcgc                    <  1:2808764/93‑1 (MQ=255)

                                                                     gATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGgcgc                    <  2:6229717/93‑1 (MQ=255)

                                                                       tataACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCgg                  >  2:2900990/1‑93 (MQ=255)

                                                                       tataACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCgg                  >  1:2310391/1‑93 (MQ=255)

                                                                         taACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTa                <  2:3894835/93‑1 (MQ=255)

                                                                          aaCCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTAt               >  2:5434123/1‑93 (MQ=255)

                                                                          aaCCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTAt               >  2:1181576/1‑93 (MQ=255)

                                                                          aaCCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTAt               >  1:3094393/1‑93 (MQ=255)

                                                                          aaCCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTAt               >  1:4189916/1‑93 (MQ=255)

                                                                           aCCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATc              >  1:1874171/1‑93 (MQ=255)

                                                                           aCCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATc              <  1:3921461/93‑1 (MQ=255)

                                                                            ccAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCt             <  1:2493072/93‑1 (MQ=255)

                                                                             cAATTGCGATTGGTGTGACGATGCCAGAATTGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTg            <  1:4336261/93‑1 (MQ=255)

                                                                             cAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTg            <  2:4916988/93‑1 (MQ=255)

                                                                                ttGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCCa         <  1:902493/93‑1 (MQ=255)

                                                                                ttGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCCa         <  1:5419337/93‑1 (MQ=255)

                                                                                  gCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCCAtt       <  1:1246896/93‑1 (MQ=255)

                                                                                    gATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCCATTAc     <  2:2453592/93‑1 (MQ=255)

                                                                                     aTTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCCATTACt    >  2:2655173/1‑93 (MQ=255)

                                                                                      ttGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCCATTACTg   <  1:5456118/93‑1 (MQ=255)

                                                                                      ttGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCCATTACTg   <  2:5374489/93‑1 (MQ=255)

CAGTACCGCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGCGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCCATTACTGC  >  NC_000913/2918833‑2919012

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCTCAGTACCGCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGCGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCCATTACTGCCCAA  >  NC_000913/2918830‑2919016

GCTCAGTACCGCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGT                                                                                               <  SRR4302533.3171924/94‑1 (MQ=60)

GCTCAGTACCGCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGT                                                                                               <  SRR4302533.4675472/94‑1 (MQ=60)

 CTCAGTACCGCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTG                                                                                              <  SRR4302533.3547110/94‑1 (MQ=60)

 CTCAGTACCGCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTG                                                                                              <  SRR4302533.189462/94‑1 (MQ=60)

 CTCAGTACCGCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTG                                                                                              >  SRR4302533.4946769/1‑94 (MQ=60)

 CTCAGTACCGCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTG                                                                                              >  SRR4302533.569222/1‑94 (MQ=60)

  TCAGTACCGCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGT                                                                                             <  SRR4302533.3079966/94‑1 (MQ=60)

   CAGTACCGCGATTAAGGCATGAACCCCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTG                                                                                            <  SRR4302533.4438644/94‑1 (MQ=60)

     GTACCGCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTNTGAC                                                                                          >  SRR4302533.4443081/1‑94 (MQ=60)

     GTACCGCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGAC                                                                                          <  SRR4302533.4451916/94‑1 (MQ=60)

      TACCGCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACG                                                                                         <  SRR4302533.6157155/94‑1 (MQ=60)

      TACCGCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACG                                                                                         <  SRR4302533.2986658/94‑1 (MQ=60)

      TACCGCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACG                                                                                         <  SRR4302533.3465784/94‑1 (MQ=60)

      TACCGCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACG                                                                                         <  SRR4302533.4967316/94‑1 (MQ=60)

        CCGCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGAT                                                                                       <  SRR4302533.74997/94‑1 (MQ=60)

        CCGCGATTAAGGCATGAACACCAACATAAACCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGAT                                                                                       >  SRR4302533.1244882/1‑94 (MQ=60)

         CGCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATG                                                                                      <  SRR4302533.3163255/94‑1 (MQ=60)

         CGCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATG                                                                                      <  SRR4302533.610211/94‑1 (MQ=60)

          GCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGC                                                                                     <  SRR4302533.1512318/94‑1 (MQ=60)

           CGATTAAGGCATGAACACCAACATATATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCC                                                                                    <  SRR4302533.6123160/94‑1 (MQ=60)

           CGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCC                                                                                    >  SRR4302533.5331213/1‑94 (MQ=60)

             ATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAG                                                                                  <  SRR4302533.90925/94‑1 (MQ=60)

              TTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGA                                                                                 >  SRR4302533.5131556/1‑94 (MQ=60)

                AAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAA                                                                               >  SRR4302533.5324777/1‑94 (MQ=60)

                 AGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAAT                                                                              <  SRR4302533.617074/94‑1 (MQ=60)

                 AGGCATGAACACCAACATAAACCAGCGCCCCATTAACCGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAAT                                                                              <  SRR4302533.4670785/94‑1 (MQ=60)

                     ATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTA                                                                          >  SRR4302533.3736365/1‑94 (MQ=60)

                     ATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTA                                                                          >  SRR4302533.642769/1‑94 (MQ=60)

                     ATGAACACCAACAAAAATCAGCGCCCTATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTA                                                                          <  SRR4302533.5268864/94‑1 (MQ=60)

                     ATGAACACAAACATAAATCAGCTCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTA                                                                          <  SRR4302533.74510/94‑1 (MQ=60)

                          CACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAA                                                                     >  SRR4302533.2453325/1‑94 (MQ=60)

                            CCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACA                                                                   >  SRR4302533.6135426/1‑94 (MQ=60)

                            CCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACA                                                                   >  SRR4302533.1733842/1‑94 (MQ=60)

                             CAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACAT                                                                  >  SRR4302533.2343716/1‑94 (MQ=60)

                             CAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACAT                                                                  <  SRR4302533.1590241/94‑1 (MQ=60)

                             CAACATAAACCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACAT                                                                  <  SRR4302533.4326038/94‑1 (MQ=60)

                             AAACATAAATCAGCGCCCCATAAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGTTTGGTGTGACGATGCCAGAAATGTTACCGAACAT                                                                  <  SRR4302533.4909787/94‑1 (MQ=60)

                              AACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATG                                                                 <  SRR4302533.3969162/94‑1 (MQ=60)

                              AACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATG                                                                 <  SRR4302533.3969159/94‑1 (MQ=60)

                              AAAATAAATCAGCGCCCCATGAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATG                                                                 <  SRR4302533.506424/94‑1 (MQ=60)

                               ACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGT                                                                >  SRR4302533.6347182/1‑94 (MQ=60)

                                CATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTT                                                               <  SRR4302533.304673/94‑1 (MQ=60)

                                CATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTT                                                               <  SRR4302533.4531106/94‑1 (MQ=60)

                                AATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTT                                                               <  SRR4302533.1194516/94‑1 (MQ=60)

                                 ATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTG                                                              <  SRR4302533.3312953/94‑1 (MQ=60)

                                 ATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTG                                                              >  SRR4302533.834303/1‑94 (MQ=60)

                                  TAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGA                                                             <  SRR4302533.5050159/94‑1 (MQ=60)

                                    AATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAAC                                                           >  SRR4302533.1540620/1‑94 (MQ=60)

                                    AATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAAC                                                           >  SRR4302533.1269802/1‑94 (MQ=60)

                                    AATCAGCGCCCCATAAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAAC                                                           <  SRR4302533.1459951/94‑1 (MQ=60)

                                     ATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACA                                                          >  SRR4302533.5232781/1‑94 (MQ=60)

                                       CAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGG                                                        <  SRR4302533.1193479/94‑1 (MQ=60)

                                       CAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGG                                                        >  SRR4302533.1476611/1‑94 (MQ=60)

                                        AGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGC                                                       <  SRR4302533.3316357/94‑1 (MQ=60)

                                        AGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGC                                                       <  SRR4302533.6138837/94‑1 (MQ=60)

                                        AGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGC                                                       >  SRR4302533.2940338/1‑94 (MQ=60)

                                        AGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGC                                                       >  SRR4302533.2940337/1‑94 (MQ=60)

                                        AGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGC                                                       >  SRR4302533.5468506/1‑94 (MQ=60)

                                          CGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCA                                                     >  SRR4302533.806421/1‑94 (MQ=60)

                                          CGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCA                                                     >  SRR4302533.3174259/1‑94 (MQ=60)

                                          CGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCA                                                     <  SRR4302533.2660291/94‑1 (MQ=60)

                                          CGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCA                                                     <  SRR4302533.5815639/94‑1 (MQ=60)

                                           cccccaaaaaagGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCAC                                                    <  SRR4302533.4383792/82‑1 (MQ=60)

                                           GCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCAC                                                    <  SRR4302533.3107303/94‑1 (MQ=60)

                                           CCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCAC                                                    <  SRR4302533.4643457/94‑1 (MQ=60)

                                            CCCCATTAAAGGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACC                                                   <  SRR4302533.3966836/94‑1 (MQ=60)

                                            CCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGACACC                                                   >  SRR4302533.169885/1‑94 (MQ=60)

                                             CCCATAAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCG                                                  <  SRR4302533.3819777/94‑1 (MQ=60)

                                              CCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGG                                                 >  SRR4302533.1730347/1‑94 (MQ=60)

                                               CATTAAACGAGCCAGTCGTGCCAGCGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGA                                                <  SRR4302533.5105000/94‑1 (MQ=60)

                                               CATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGA                                                >  SRR4302533.3656843/1‑94 (MQ=60)

                                                ATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAA                                               >  SRR4302533.5312563/1‑94 (MQ=60)

                                                ATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAA                                               <  SRR4302533.4897738/94‑1 (MQ=60)

                                                 TTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGACCAGGCCACCGGAAA                                              >  SRR4302533.3040903/1‑94 (MQ=60)

                                                 TTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAA                                              <  SRR4302533.5859189/94‑1 (MQ=60)

                                                  TAACCGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAG                                             <  SRR4302533.1284069/94‑1 (MQ=60)

                                                  TAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAG                                             <  SRR4302533.521457/94‑1 (MQ=60)

                                                   AAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGA                                            >  SRR4302533.6214274/1‑94 (MQ=60)

                                                   AAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGA                                            >  SRR4302533.3514675/1‑94 (MQ=60)

                                                    AACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGAC                                           <  SRR4302533.2317796/94‑1 (MQ=60)

                                                     ACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACC                                          <  SRR4302533.743497/94‑1 (MQ=60)

                                                     ACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACC                                          <  SRR4302533.996742/94‑1 (MQ=60)

                                                     ACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACC                                          <  SRR4302533.2164381/94‑1 (MQ=60)

                                                       GAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGC                                        <  SRR4302533.5904660/94‑1 (MQ=60)

                                                       GAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGC                                        >  SRR4302533.232622/1‑94 (MQ=60)

                                                        AGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCT                                       >  SRR4302533.5266741/1‑94 (MQ=60)

                                                         GCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTG                                      >  SRR4302533.5776910/1‑94 (MQ=60)

                                                         GCCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTG                                      >  SRR4302533.3274035/1‑94 (MQ=60)

                                                          CCAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGA                                     >  SRR4302533.267158/1‑94 (MQ=60)

                                                           CAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGAT                                    >  SRR4302533.4501605/1‑94 (MQ=60)

                                                           CAGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGAT                                    >  SRR4302533.5005336/1‑94 (MQ=60)

                                                            AGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATC                                   >  SRR4302533.2713339/1‑94 (MQ=60)

                                                            AGTCGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGCTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATC                                   >  SRR4302533.1039436/1‑94 (MQ=60)

                                                               CGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCT                                >  SRR4302533.4832275/1‑94 (MQ=60)

                                                               CGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCT                                <  SRR4302533.2372812/94‑1 (MQ=60)

                                                               CGTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCT                                <  SRR4302533.149804/94‑1 (MQ=60)

                                                                GTGCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTT                               >  SRR4302533.3143522/1‑94 (MQ=60)

                                                                  GCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTT                             <  SRR4302533.6035296/94‑1 (MQ=60)

                                                                  GCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTT                             >  SRR4302533.2964365/1‑94 (MQ=60)

                                                                  GCCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTT                             <  SRR4302533.2005657/94‑1 (MQ=60)

                                                                   CCAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTG                            >  SRR4302533.1343354/1‑94 (MQ=60)

                                                                    CAACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGG                           <  SRR4302533.5279752/94‑1 (MQ=60)

                                                                     AACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGC                          >  SRR4302533.2268686/1‑94 (MQ=60)

                                                                      ACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCG                         >  SRR4302533.658346/1‑94 (MQ=60)

                                                                      ACGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCG                         <  SRR4302533.4772682/94‑1 (MQ=60)

                                                                       CGATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGC                        >  SRR4302533.5237898/1‑94 (MQ=60)

                                                                        GATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCG                       <  SRR4302533.2826048/94‑1 (MQ=60)

                                                                         ATATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGG                      >  SRR4302533.2324704/1‑94 (MQ=60)

                                                                           ATAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTA                    >  SRR4302533.3331847/1‑94 (MQ=60)

                                                                            TAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTAT                   <  SRR4302533.2344515/94‑1 (MQ=60)

                                                                            TAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTAT                   >  SRR4302533.4215279/1‑94 (MQ=60)

                                                                            TAACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTAT                   >  SRR4302533.3113417/1‑94 (MQ=60)

                                                                             AACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATC                  >  SRR4302533.1885591/1‑94 (MQ=60)

                                                                              ACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCT                 <  SRR4302533.178255/94‑1 (MQ=60)

                                                                              ACCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCT                 <  SRR4302533.3945409/94‑1 (MQ=60)

                                                                               CCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTG                <  SRR4302533.2508446/94‑1 (MQ=60)

                                                                               CCAATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTG                <  SRR4302533.2506509/94‑1 (MQ=60)

                                                                                CAATTGCGATTGGTGTGACGATGCCAGAATTGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGC               <  SRR4302533.4362393/94‑1 (MQ=60)

                                                                                 AATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCC              <  SRR4302533.3036929/94‑1 (MQ=60)

                                                                                  ATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCCA             >  SRR4302533.3246069/1‑94 (MQ=60)

                                                                                  ATTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGACACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCCA             >  SRR4302533.3911751/1‑94 (MQ=60)

                                                                                   TTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCCAT            <  SRR4302533.5451941/94‑1 (MQ=60)

                                                                                   TTGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCCAT            <  SRR4302533.907785/94‑1 (MQ=60)

                                                                                    TGCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCCATT           >  SRR4302533.3628355/1‑94 (MQ=60)

                                                                                     GCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCCATTA          <  SRR4302533.4164452/94‑1 (MQ=60)

                                                                                     GCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCCATTA          <  SRR4302533.1254341/94‑1 (MQ=60)

                                                                                     GCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCCATTA          <  SRR4302533.1865074/94‑1 (MQ=60)

                                                                                     GCGATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCCATTA          <  SRR4302533.3785306/94‑1 (MQ=60)

                                                                                       GATTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCCATTACT        <  SRR4302533.2534917/94‑1 (MQ=60)

                                                                                         TTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCCATTACTGC      <  SRR4302533.5853212/94‑1 (MQ=60)

                                                                                         TTGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCCATTACTGC      <  SRR4302533.5488989/94‑1 (MQ=60)

                                                                                          TGGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCCATTACTGCC     >  SRR4302533.938999/1‑94 (MQ=60)

                                                                                           GGTGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCCATTACTGCCC    >  SRR4302533.3291888/1‑94 (MQ=60)

                                                                                             TGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCCATTACTGCCCAA  >  SRR4302533.5206711/1‑94 (MQ=60)

                                                                                             TGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCCATTACTGCCCAA  <  SRR4302533.5566085/94‑1 (MQ=60)

GCTCAGTACCGCGATTAAGGCATGAACACCAACATAAATCAGCGCCCCATTAAACGAGCCAGTCGTGCCAACGATATAACCAATTGCGATTGGCGTGACGATGCCAGAAATGTTACCGAACATGTTGAACAGGCCACCGGAAAGACCGCTGATCTCTTTTGGCGCGGTATCTGCCATTACTGCCCAA  >  NC_000913/2918830‑2919016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`