Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,924,563	T→C	N78N (AAT→AAC)	ygdH →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,924,563	0	T	C	100.0%	734.6 / NA	230	N78N (AAT→AAC)	ygdH	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (110/120); total (110/120)

Only 100 of 247 total aligned reads displayed.

CGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAATCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATTCTCTTCGTTTA  >  NC_000913/2924473‑2924652

cGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGGACGCGGCGTAAAGCGGGAACTGATTAAccc                                                                                         >  2:2345690/1‑93 (MQ=255)

cGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAAccc                                                                                         >  2:2419512/1‑93 (MQ=255)

 gATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAAcccc                                                                                        >  1:4655038/1‑93 (MQ=255)

 gATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAAcccc                                                                                        >  2:3195873/1‑93 (MQ=255)

 gATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAAcccc                                                                                        >  1:1456603/1‑93 (MQ=255)

   tAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGGAAGCGGCGTAAAGCTGGAACTGATTAAcccccc                                                                                      >  2:798425/1‑93 (MQ=255)

   tAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAAcccccc                                                                                      <  2:2613375/93‑1 (MQ=255)

    aaCAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCg                                                                                     <  2:343563/93‑1 (MQ=255)

     aCAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCgg                                                                                    >  1:2941522/1‑93 (MQ=255)

        gCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAag                                                                                 >  2:1653367/1‑93 (MQ=255)

         cAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAaga                                                                                <  2:4999789/93‑1 (MQ=255)

         cAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAaga                                                                                >  2:5408181/1‑93 (MQ=255)

           aaGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGAGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAgg                                                                              >  2:1761503/1‑93 (MQ=255)

            aGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGc                                                                             >  2:725015/1‑93 (MQ=255)

            aGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGc                                                                             >  1:5419494/1‑93 (MQ=255)

             gAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCt                                                                            >  2:2886693/1‑93 (MQ=255)

              aaTTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCtt                                                                           <  2:5742206/93‑1 (MQ=255)

              aaTTGCTGTCTCGTTTTGAAAATTTCGATATTAAAGTCTTGCGCCGTGAACGCGGCGGAAAGCTGGAACTGATTAACCCACCGGAAGAGGCtt                                                                           >  1:5653809/1‑93 (MQ=255)

               aTTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCttt                                                                          <  2:3756227/93‑1 (MQ=255)

               aTTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCttt                                                                          >  1:1188193/1‑93 (MQ=255)

               aTTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCttt                                                                          <  1:3753180/93‑1 (MQ=255)

                 tGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTg                                                                        <  1:3024713/93‑1 (MQ=255)

                   cTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTc                                                                      <  2:6099366/93‑1 (MQ=255)

                    tGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCg                                                                     >  1:1851974/1‑93 (MQ=255)

                     gTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGa                                                                    >  2:3472359/1‑93 (MQ=255)

                     gTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGa                                                                    >  1:4829613/1‑93 (MQ=255)

                      tctcGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGAt                                                                   >  2:6202702/1‑93 (MQ=255)

                       ctcGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATg                                                                  >  2:5952688/1‑93 (MQ=255)

                          gTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATgggg                                                               >  1:5803279/1‑92 (MQ=255)

                          gTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGc                                                               >  1:2760164/1‑93 (MQ=255)

                          gTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGc                                                               >  2:6015774/1‑93 (MQ=255)

                          gTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGc                                                               <  1:4695135/93‑1 (MQ=255)

                             ttGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGaa                                                            >  1:1505541/1‑93 (MQ=255)

                             ttGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGaa                                                            >  1:214686/1‑93 (MQ=255)

                               gAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAatt                                                          <  2:3402420/93‑1 (MQ=255)

                                  aaTTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAattatt                                                       <  2:1563584/93‑1 (MQ=255)

                                  aaTTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAattatt                                                       <  1:3067946/93‑1 (MQ=255)

                                    tttCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGGGAATTATTcg                                                     >  1:4561044/1‑93 (MQ=255)

                                         atatTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCtt                                                <  1:1096172/93‑1 (MQ=255)

                                         atatTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCtt                                                <  1:5164434/93‑1 (MQ=255)

                                         atatTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCtt                                                <  2:4434291/93‑1 (MQ=255)

                                         atatTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCtt                                                >  1:1639773/1‑93 (MQ=255)

                                          tatTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCttt                                               <  1:4909240/93‑1 (MQ=255)

                                          tatTAACGTCTTGCGCCGTGAACGCGGCGAAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATTGGCGAATTAGTCGCGCttt                                               >  2:1796093/1‑93 (MQ=255)

                                           atTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTg                                              >  2:3011161/1‑93 (MQ=255)

                                           atTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTg                                              >  2:1339182/1‑93 (MQ=255)

                                           atTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTg                                              >  1:2466195/1‑93 (MQ=255)

                                             tAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCa                                            >  1:1020402/1‑93 (MQ=255)

                                              aaCGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAg                                           <  1:1750459/93‑1 (MQ=255)

                                              aaCGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAg                                           >  1:1591580/1‑93 (MQ=255)

                                              aaCGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAg                                           <  2:1894033/93‑1 (MQ=255)

                                              aaCGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAg                                           <  2:5172787/93‑1 (MQ=255)

                                              aaCGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAg                                           <  2:3990560/93‑1 (MQ=255)

                                               aCGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAgg                                          <  1:622907/93‑1 (MQ=255)

                                               aCGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAgg                                          <  2:4924360/93‑1 (MQ=255)

                                                cGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGc                                         >  1:99800/1‑93 (MQ=255)

                                                 gTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGcc                                        >  1:849273/1‑93 (MQ=255)

                                                 gTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGcc                                        >  2:4616844/1‑93 (MQ=255)

                                                 gTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGcc                                        <  1:6139278/93‑1 (MQ=255)

                                                  tCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCa                                       <  2:14199/93‑1 (MQ=255)

                                                  tCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCa                                       >  2:3035497/1‑93 (MQ=255)

                                                   cTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCaa                                      <  2:6233081/93‑1 (MQ=255)

                                                     tGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACt                                    >  2:4192016/1‑93 (MQ=255)

                                                      gcgcCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACtt                                   <  1:3642974/93‑1 (MQ=255)

                                                        gcCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGt                                 >  1:536635/1‑93 (MQ=255)

                                                        gcCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGt                                 >  1:4852398/1‑93 (MQ=255)

                                                         ccGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGtt                                <  2:561308/93‑1 (MQ=255)

                                                         ccGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTCTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGtt                                <  1:4436645/93‑1 (MQ=255)

                                                          cGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTc                               <  2:115403/93‑1 (MQ=255)

                                                            tGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTcgc                             >  2:1330538/1‑93 (MQ=255)

                                                            tGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTcgc                             >  2:5044943/1‑93 (MQ=255)

                                                            tGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTcgc                             >  1:2576820/1‑93 (MQ=255)

                                                               aCGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGt                          <  1:6096032/93‑1 (MQ=255)

                                                                cgcgGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTc                         >  1:4958984/1‑93 (MQ=255)

                                                                cgcgCCGTAAAGCTGGAACTGATTAACCCCCCGCAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTc                         <  1:679015/93‑1 (MQ=255)

                                                                 gcggcgTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTcc                        >  1:3423913/1‑93 (MQ=255)

                                                                 gcggcgTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTcc                        <  1:3568026/93‑1 (MQ=255)

                                                                 gcggcgTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTcc                        <  1:3835179/93‑1 (MQ=255)

                                                                 gcggcgTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTcc                        <  2:4813857/93‑1 (MQ=255)

                                                                    gcgTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGc                     <  1:3177206/93‑1 (MQ=255)

                                                                    gcgTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGc                     <  2:3798724/93‑1 (MQ=255)

                                                                      gTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGt                   >  1:2589429/1‑93 (MQ=255)

                                                                      gTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGt                   >  1:1047126/1‑93 (MQ=255)

                                                                       tAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTg                  <  2:2862608/93‑1 (MQ=255)

                                                                       tAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTg                  >  1:4267411/1‑93 (MQ=255)

                                                                        aaaGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGa                 <  1:1796664/93‑1 (MQ=255)

                                                                          aGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACa               <  1:5448666/93‑1 (MQ=255)

                                                                             tGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATtc            >  2:5248412/1‑93 (MQ=255)

                                                                             tGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATtc            <  1:2332322/93‑1 (MQ=255)

                                                                              ggAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATtct           <  2:5895421/93‑1 (MQ=255)

                                                                               gAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATtctc          <  2:4750651/93‑1 (MQ=255)

                                                                                aaCTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATTctct         <  2:2603065/93‑1 (MQ=255)

                                                                                 aCTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATTCTCtt        <  2:3488119/93‑1 (MQ=255)

                                                                                 aCTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATTCTCtt        <  2:5592432/93‑1 (MQ=255)

                                                                                  cTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATTCTCTTc       >  1:4353515/1‑93 (MQ=255)

                                                                                  cTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATTCTCTTc       <  2:4276693/93‑1 (MQ=255)

                                                                                  cTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATTCTCTTc       <  1:4097313/93‑1 (MQ=255)

                                                                                   tGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATTCTCTTCg      >  1:4458862/1‑93 (MQ=255)

                                                                                     aTTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATTCTCTTCGtt    >  1:1220573/1‑93 (MQ=255)

                                                                                       tAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATTCTCTTCGTTTa  <  2:4720420/93‑1 (MQ=255)

CGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAATCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATTCTCTTCGTTTA  >  NC_000913/2924473‑2924652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GACCGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAATCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATTCTCTTCGTTTACGGG  >  NC_000913/2924470‑2924656

GACCGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAAC                                                                                               >  SRR4302533.639173/1‑94 (MQ=60)

 ACCGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACC                                                                                              >  SRR4302533.4738982/1‑94 (MQ=60)

  CCGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCC                                                                                             >  SRR4302533.6198888/1‑94 (MQ=60)

   CGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCC                                                                                            <  SRR4302533.4717482/94‑1 (MQ=60)

   CGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCC                                                                                            >  SRR4302533.4683249/1‑94 (MQ=60)

   CGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCC                                                                                            >  SRR4302533.1661735/1‑94 (MQ=60)

   CGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCC                                                                                            >  SRR4302533.1465387/1‑94 (MQ=60)

    GATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCC                                                                                           <  SRR4302533.1915816/94‑1 (MQ=60)

     ATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCC                                                                                          >  SRR4302533.2332314/1‑94 (MQ=60)

     ATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCC                                                                                          <  SRR4302533.2408230/94‑1 (MQ=60)

      TAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCG                                                                                         <  SRR4302533.4420488/94‑1 (MQ=60)

       AACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGG                                                                                        <  SRR4302533.3743305/94‑1 (MQ=60)

       AACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGG                                                                                        >  SRR4302533.2959486/1‑94 (MQ=60)

       AACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGG                                                                                        >  SRR4302533.1171801/1‑94 (MQ=60)

          AGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAG                                                                                     >  SRR4302533.2576336/1‑94 (MQ=60)

            CAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAG                                                                                   >  SRR4302533.1497314/1‑94 (MQ=60)

            CAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAG                                                                                   >  SRR4302533.1223245/1‑94 (MQ=60)

             AAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGG                                                                                  >  SRR4302533.3650510/1‑94 (MQ=60)

              AAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGC                                                                                 >  SRR4302533.4098761/1‑94 (MQ=60)

              AAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGC                                                                                 >  SRR4302533.5452099/1‑94 (MQ=60)

              AAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCACGGAAGATGC                                                                                 >  SRR4302533.2890003/1‑94 (MQ=60)

                GAATTGCTGTCTCGTTTTGAAAATTTCGATATTAAAGTCTTGCGCCGTGAACGCGGCGGAAAGCTGGAACTGATTAACCCACCGGAAGAGGCTT                                                                               >  SRR4302533.5687981/1‑94 (MQ=60)

                 AATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTT                                                                              >  SRR4302533.1195327/1‑94 (MQ=60)

                  ATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTT                                                                             <  SRR4302533.1109836/94‑1 (MQ=60)

                  ATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTT                                                                             <  SRR4302533.3776186/94‑1 (MQ=60)

                   TTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTG                                                                            <  SRR4302533.5442403/94‑1 (MQ=60)

                   TTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCACCCGGAAGAGGCTTTTG                                                                            >  SRR4302533.1442023/1‑94 (MQ=60)

                    TGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGT                                                                           <  SRR4302533.3043218/94‑1 (MQ=60)

                      CTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCG                                                                         >  SRR4302533.1863266/1‑94 (MQ=60)

                       TGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGA                                                                        >  SRR4302533.4858882/1‑94 (MQ=60)

                        GTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGAT                                                                       <  SRR4302533.1575080/94‑1 (MQ=60)

                         TCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATG                                                                      <  SRR4302533.4538680/94‑1 (MQ=60)

                            CGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGG                                                                   >  SRR4302533.5838331/1‑94 (MQ=60)

                            CGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGG                                                                   >  SRR4302533.353218/1‑94 (MQ=60)

                            CGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGC                                                                   >  SRR4302533.2777080/1‑94 (MQ=60)

                             GTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCG                                                                  <  SRR4302533.4723585/94‑1 (MQ=60)

                             GTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCG                                                                  <  SRR4302533.741276/94‑1 (MQ=60)

                             GTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCG                                                                  <  SRR4302533.1453289/94‑1 (MQ=60)

                              TTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGTGA                                                                 >  SRR4302533.5615958/1‑94 (MQ=60)

                              TTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGA                                                                 <  SRR4302533.2321724/94‑1 (MQ=60)

                              TTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGA                                                                 >  SRR4302533.561369/1‑94 (MQ=60)

                               TTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAA                                                                >  SRR4302533.1514622/1‑94 (MQ=60)

                               TTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAA                                                                >  SRR4302533.216037/1‑94 (MQ=60)

                                     ACTTTCGATAATATCGTCTCGCGCCGTGAACGCGACGTAAAGCTGGAACTGATTAACCCCCCGGACGAGGCTTTTGTCGATGGGCGAATTATTC                                                          <  SRR4302533.3049084/94‑1 (MQ=60)

                                     AATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTC                                                          <  SRR4302533.3086787/94‑1 (MQ=60)

                                      ATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGGGAATTATTCG                                                         >  SRR4302533.4588707/1‑94 (MQ=60)

                                       TTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGC                                                        <  SRR4302533.4361116/94‑1 (MQ=60)

                                       TTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGC                                                        <  SRR4302533.6021842/94‑1 (MQ=60)

                                        TTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCG                                                       >  SRR4302533.2784701/1‑94 (MQ=60)

                                          CGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCT                                                     >  SRR4302533.3344162/1‑94 (MQ=60)

                                           GATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTT                                                    >  SRR4302533.1649702/1‑94 (MQ=60)

                                            ATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTT                                                   <  SRR4302533.5195619/94‑1 (MQ=60)

                                            ATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTT                                                   <  SRR4302533.1102663/94‑1 (MQ=60)

                                             TATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTG                                                  <  SRR4302533.4938982/94‑1 (MQ=60)

                                             TATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTG                                                  >  SRR4302533.1520800/1‑94 (MQ=60)

                                             TATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTG                                                  >  SRR4302533.5424390/1‑94 (MQ=60)

                                             TATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTG                                                  >  SRR4302533.2481408/1‑94 (MQ=60)

                                              ATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGC                                                 >  SRR4302533.5469251/1‑94 (MQ=60)

                                              ATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGC                                                 >  SRR4302533.4746094/1‑94 (MQ=60)

                                              ATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGC                                                 >  SRR4302533.4847865/1‑94 (MQ=60)

                                              ATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGC                                                 <  SRR4302533.611365/94‑1 (MQ=60)

                                               TTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCA                                                >  SRR4302533.3836553/1‑94 (MQ=60)

                                               TTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCA                                                >  SRR4302533.1026396/1‑94 (MQ=60)

                                                TAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAG                                               <  SRR4302533.4472711/94‑1 (MQ=60)

                                                TAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAG                                               >  SRR4302533.1601206/1‑94 (MQ=60)

                                                 AACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGG                                              <  SRR4302533.786785/94‑1 (MQ=60)

                                                 AACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGG                                              <  SRR4302533.6162109/94‑1 (MQ=60)

                                                 AACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGG                                              <  SRR4302533.1761117/94‑1 (MQ=60)

                                                 AACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGG                                              <  SRR4302533.1787456/94‑1 (MQ=60)

                                                 AACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGG                                              >  SRR4302533.5234655/1‑94 (MQ=60)

                                                  ACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGC                                             >  SRR4302533.100419/1‑94 (MQ=60)

                                                  ACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGC                                             <  SRR4302533.626566/94‑1 (MQ=60)

                                                   CGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCC                                            >  SRR4302533.854243/1‑94 (MQ=60)

                                                    GTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCA                                           <  SRR4302533.6176258/94‑1 (MQ=60)

                                                     TCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAA                                          <  SRR4302533.5066476/94‑1 (MQ=60)

                                                       TTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACT                                        <  SRR4302533.4257157/94‑1 (MQ=60)

                                                         GCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTG                                      <  SRR4302533.3372095/94‑1 (MQ=60)

                                                         GCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTG                                      <  SRR4302533.3665373/94‑1 (MQ=60)

                                                          CGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGT                                     >  SRR4302533.4881803/1‑94 (MQ=60)

                                                          CGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGT                                     >  SRR4302533.539824/1‑94 (MQ=60)

                                                          CGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGT                                     >  SRR4302533.4876028/1‑94 (MQ=60)

                                                          CGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGT                                     >  SRR4302533.4618439/1‑94 (MQ=60)

                                                           GCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTT                                    <  SRR4302533.1819935/94‑1 (MQ=60)

                                                           GCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTT                                    <  SRR4302533.578899/94‑1 (MQ=60)

                                                           GCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTT                                    <  SRR4302533.1643571/94‑1 (MQ=60)

                                                           GCCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTT                                    <  SRR4302533.4892684/94‑1 (MQ=60)

                                                            CCGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTCTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTC                                   <  SRR4302533.4463465/94‑1 (MQ=60)

                                                             CGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCG                                  >  SRR4302533.2696643/1‑94 (MQ=60)

                                                             CGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCG                                  <  SRR4302533.4982054/94‑1 (MQ=60)

                                                             CGTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGACAACTTGTTCG                                  >  SRR4302533.4286396/1‑94 (MQ=60)

                                                              GTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGC                                 >  SRR4302533.2592674/1‑94 (MQ=60)

                                                              GTGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGC                                 >  SRR4302533.4934668/1‑94 (MQ=60)

                                                               TGAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCG                                <  SRR4302533.3061476/94‑1 (MQ=60)

                                                                GAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGG                               >  SRR4302533.4501919/1‑94 (MQ=60)

                                                                GAACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGG                               >  SRR4302533.3851714/1‑94 (MQ=60)

                                                                  ACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTC                             >  SRR4302533.4989027/1‑94 (MQ=60)

                                                                  ACGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTC                             <  SRR4302533.6132856/94‑1 (MQ=60)

                                                                   CGCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCC                            >  SRR4302533.3445065/1‑94 (MQ=60)

                                                                   CGCGCCGTAAAGCTGGAACTGATTAACCCCCCGCAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCC                            <  SRR4302533.683028/94‑1 (MQ=60)

                                                                    GCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCT                           <  SRR4302533.3858615/94‑1 (MQ=60)

                                                                    GCGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCT                           <  SRR4302533.3590014/94‑1 (MQ=60)

                                                                     CGGCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTG                          <  SRR4302533.2603370/94‑1 (MQ=60)

                                                                       GCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCG                        <  SRR4302533.1680405/94‑1 (MQ=60)

                                                                       GCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCG                        >  SRR4302533.3612490/1‑94 (MQ=60)

                                                                       GCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCG                        <  SRR4302533.1841297/94‑1 (MQ=60)

                                                                       GCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCG                        <  SRR4302533.2560753/94‑1 (MQ=60)

                                                                       GCGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCG                        <  SRR4302533.3196748/94‑1 (MQ=60)

                                                                        CGTAAAGCTGGAACTGATTACCCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGT                       <  SRR4302533.6311340/94‑1 (MQ=60)

                                                                        CGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGT                       >  SRR4302533.2605343/1‑94 (MQ=60)

                                                                        CGTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGT                       >  SRR4302533.1053279/1‑94 (MQ=60)

                                                                         GTAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTG                      >  SRR4302533.4293107/1‑94 (MQ=60)

                                                                          TAAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGA                     <  SRR4302533.1075467/94‑1 (MQ=60)

                                                                           AAAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGAC                    <  SRR4302533.1807597/94‑1 (MQ=60)

                                                                            AAGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACA                   <  SRR4302533.1795751/94‑1 (MQ=60)

                                                                             AGCTGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACAT                  <  SRR4302533.5481488/94‑1 (MQ=60)

                                                                                TGGAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATTCT               <  SRR4302533.2346762/94‑1 (MQ=60)

                                                                                  GAACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGATCGCGGTACTGCGTGACATTCTCT             >  SRR4302533.2982399/1‑94 (MQ=60)

                                                                                    ACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATTCTCTTC           <  SRR4302533.1031986/94‑1 (MQ=60)

                                                                                    ACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATTCTCTTC           >  SRR4302533.4379792/1‑94 (MQ=60)

                                                                                    ACTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATTCTCTTC           >  SRR4302533.5048861/1‑94 (MQ=60)

                                                                                     CTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATTCTCTTCG          >  SRR4302533.4485832/1‑94 (MQ=60)

                                                                                     CTGATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATTCTCTTCG          <  SRR4302533.4122255/94‑1 (MQ=60)

                                                                                       GATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATTCTCTTCGTT        >  SRR4302533.1227899/1‑94 (MQ=60)

                                                                                        ATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATTCTCTTCGTTT       >  SRR4302533.3177034/1‑94 (MQ=60)

                                                                                        ATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATTCTCTTCGTTT       <  SRR4302533.6231737/94‑1 (MQ=60)

                                                                                        ATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATTCTCTTCGTTT       <  SRR4302533.996030/94‑1 (MQ=60)

                                                                                        ATTAACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTAGCGGTCCTGCGTGACATTCTCTTCGTTT       <  SRR4302533.4407531/94‑1 (MQ=60)

                                                                                            ACCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATTCTCTTCGTTTACGG   <  SRR4302533.5852273/94‑1 (MQ=60)

                                                                                             CCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATTCTCTTCGTTTACGGG  >  SRR4302533.5300085/1‑94 (MQ=60)

                                                                                             CCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATTCTCTTCGTTTACGGG  >  SRR4302533.2898910/1‑94 (MQ=60)

GACCGATAACAGCAAAGAATTGCTGTCTCGTTTTGAAAATTTCGATATTAACGTCTTGCGCCGTGAACGCGGCGTAAAGCTGGAACTGATTAATCCCCCGGAAGAGGCTTTTGTCGATGGGCGAATTATTCGCGCTTTGCAGGCCAACTTGTTCGCGGTCCTGCGTGACATTCTCTTCGTTTACGGG  >  NC_000913/2924470‑2924656

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`