Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,925,058	A→C	E243D (GAA→GAC)	ygdH →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,925,058	0	A	C	100.0%	800.4 / NA	248	E243D (GAA→GAC)	ygdH	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (124/124); total (124/124)

Only 100 of 253 total aligned reads displayed.

TATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGAAGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGGAATTTTAAT  >  NC_000913/2924968‑2925147

tATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGc                                                                                         <  2:5830962/93‑1 (MQ=255)

tATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGc                                                                                         <  1:2841354/93‑1 (MQ=255)

tATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGc                                                                                         >  2:2785909/1‑93 (MQ=255)

tATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGc                                                                                         <  2:3093115/93‑1 (MQ=255)

   gACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGtt                                                                                      >  2:3079049/1‑93 (MQ=255)

     cAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTg                                                                                    <  1:4883329/93‑1 (MQ=255)

       gagCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTc                                                                                  >  2:5408178/1‑93 (MQ=255)

       gagCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTc                                                                                  >  2:1995962/1‑93 (MQ=255)

       gagCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTc                                                                                  <  2:4454175/93‑1 (MQ=255)

       gagCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTc                                                                                  >  1:200404/1‑93 (MQ=255)

       gagCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGGTTGTc                                                                                  >  2:2386561/1‑93 (MQ=255)

         gCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCg                                                                                >  1:2085455/1‑93 (MQ=255)

           cGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTa                                                                              <  1:5272168/93‑1 (MQ=255)

           cGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTa                                                                              >  2:5779157/1‑93 (MQ=255)

            gTCTATTATCTCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTAt                                                                             <  1:2423676/93‑1 (MQ=255)

            gTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTAt                                                                             <  2:1035901/93‑1 (MQ=255)

             tCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATc                                                                            >  2:2649384/1‑93 (MQ=255)

             tCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATc                                                                            <  2:5717878/93‑1 (MQ=255)

               gATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGc                                                                          <  1:2153505/93‑1 (MQ=255)

               gATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGc                                                                          >  1:34078/1‑93 (MQ=255)

                    tCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACg                                                                     >  2:2514266/1‑93 (MQ=255)

                       ccgcTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTa                                                                  >  1:4093461/1‑93 (MQ=255)

                         gcTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATc                                                                >  2:5700956/1‑93 (MQ=255)

                         gcTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATc                                                                >  1:6202906/1‑93 (MQ=255)

                         gcTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATc                                                                <  1:6040894/93‑1 (MQ=255)

                           tGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCAt                                                              >  2:4952171/1‑93 (MQ=255)

                             aaCCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTa                                                            >  1:1607367/1‑93 (MQ=255)

                             aaCCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTa                                                            <  1:2216921/93‑1 (MQ=255)

                             aaCCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTa                                                            >  1:4524771/1‑93 (MQ=255)

                              aCCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTAt                                                           <  1:1011330/93‑1 (MQ=255)

                               ccGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATc                                                          <  2:1166354/93‑1 (MQ=255)

                               ccGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATc                                                          <  2:2266728/93‑1 (MQ=255)

                                cGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCt                                                         <  2:54299/93‑1 (MQ=255)

                                  ccTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTc                                                       >  2:3654390/1‑93 (MQ=255)

                                   cTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTcc                                                      >  2:2855569/1‑93 (MQ=255)

                                   cTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTcc                                                      <  1:3617032/93‑1 (MQ=255)

                                    tAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTccc                                                     <  1:5478263/93‑1 (MQ=255)

                                    tAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTccc                                                     >  1:5877183/1‑93 (MQ=255)

                                     aaCCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCt                                                    <  1:4373284/93‑1 (MQ=255)

                                     aaCCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCt                                                    <  1:671499/93‑1 (MQ=255)

                                       cccGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTgg                                                  >  1:2473389/1‑93 (MQ=255)

                                         cGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCg                                                >  1:5813233/1‑93 (MQ=255)

                                          gCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCgg                                               <  1:1669423/93‑1 (MQ=255)

                                            tGGTCAGCGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGgtg                                             >  2:5239435/1‑93 (MQ=255)

                                            tGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGgtg                                             >  1:5190743/1‑93 (MQ=255)

                                            tGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGgtg                                             >  2:2419845/1‑93 (MQ=255)

                                            tGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGAATCGCTCACGGTATCATTATCTTCCCTGGCGgtg                                             <  2:2237894/93‑1 (MQ=255)

                                             ggTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGgtgt                                            >  2:1722152/1‑93 (MQ=255)

                                              gTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGtgtg                                           >  2:2590130/1‑93 (MQ=255)

                                              gTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGtgtg                                           >  2:179454/1‑93 (MQ=255)

                                                cAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTggg                                         <  1:5381165/93‑1 (MQ=255)

                                                cAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTggg                                         <  2:127992/93‑1 (MQ=255)

                                                 aaCGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGt                                        >  1:3444929/1‑93 (MQ=255)

                                                 aaCGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGt                                        >  2:3815387/1‑93 (MQ=255)

                                                    gAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACg                                     >  2:3166239/1‑93 (MQ=255)

                                                    gAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACg                                     >  1:4762853/1‑93 (MQ=255)

                                                     aaTTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACgg                                    >  1:3780909/1‑93 (MQ=255)

                                                     aaTTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACgg                                    >  1:4967876/1‑93 (MQ=255)

                                                      aTTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGc                                   >  2:3516880/1‑93 (MQ=255)

                                                      aTTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGc                                   <  2:3998009/93‑1 (MQ=255)

                                                       ttGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCa                                  <  1:862835/93‑1 (MQ=255)

                                                         gATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCAGTATCTTCCCTTGCGGTGTGGGTACGGCaga                                >  2:5954283/1‑93 (MQ=255)

                                                           tcatcaTGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCagaag                              >  1:3260271/1‑93 (MQ=255)

                                                           tcatcaTGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCagaag                              <  2:6246132/93‑1 (MQ=255)

                                                             atcatGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAagag                            <  2:6262223/93‑1 (MQ=255)

                                                              tcatGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGt                           <  1:1406719/93‑1 (MQ=255)

                                                               tatGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGtt                          <  1:1758301/92‑1 (MQ=255)

                                                               aataccAGAAATCGAAAAACGGCTGGACGCGTTTGTCCGTACCGCTCACGGTATTATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGtt                          <  2:4580985/89‑1 (MQ=255)

                                                                 tGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGc                        <  1:3919498/93‑1 (MQ=255)

                                                                  gCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGct                       >  2:4888127/1‑93 (MQ=255)

                                                                  gCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGct                       >  2:5308755/1‑93 (MQ=255)

                                                                   ccAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGctc                      <  2:244269/93‑1 (MQ=255)

                                                                    cAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGGAGAGTTGctct                     >  2:3334599/1‑93 (MQ=255)

                                                                    cAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGctct                     >  2:6102591/1‑93 (MQ=255)

                                                                     aGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTa                    <  1:41964/93‑1 (MQ=255)

                                                                     aGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTa                    <  2:4945030/93‑1 (MQ=255)

                                                                     aGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTa                    <  2:4266189/93‑1 (MQ=255)

                                                                      gATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTAt                   >  1:5535170/1‑93 (MQ=255)

                                                                      gATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTAt                   >  1:2711301/1‑93 (MQ=255)

                                                                       atatCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGACGAGTTGCTCTAtt                  >  2:3269048/1‑93 (MQ=255)

                                                                       atatCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTAtt                  >  1:3198825/1‑93 (MQ=255)

                                                                       atatCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTAtt                  <  1:132934/93‑1 (MQ=255)

                                                                        tatCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTAttt                 <  2:3257609/93‑1 (MQ=255)

                                                                        tatCGAAAAACGTCTGGACGCGTTGGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTAttt                 <  1:1072805/93‑1 (MQ=255)

                                                                         atCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTg                >  2:4644219/1‑93 (MQ=255)

                                                                         atCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGATGCTCTATTTg                >  2:3730253/1‑93 (MQ=255)

                                                                           cGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCt              >  2:2338660/1‑93 (MQ=255)

                                                                            gAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTg             <  2:2555724/93‑1 (MQ=255)

                                                                            gAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTg             >  1:3046969/1‑93 (MQ=255)

                                                                              aaaaCGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTggg           >  2:4195037/1‑93 (MQ=255)

                                                                              aaaaCGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTggg           <  1:841939/93‑1 (MQ=255)

                                                                              aaaaCGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTggg           >  1:5708059/1‑93 (MQ=255)

                                                                               aaaCGTCTGGACGCGCTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGCGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGGa          >  1:1440586/1‑93 (MQ=255)

                                                                                  cGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGGAAtt       <  1:3386829/93‑1 (MQ=255)

                                                                                   gTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGGAAttt      >  1:4689118/1‑93 (MQ=255)

                                                                                    tCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGGAAtttt     <  2:446031/93‑1 (MQ=255)

                                                                                     cTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGGAATTTTa    <  2:880940/93‑1 (MQ=255)

                                                                                      tGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGGAATTTTaa   >  2:5454983/1‑93 (MQ=255)

                                                                                      tGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGGAATTTTaa   >  2:743075/1‑93 (MQ=255)

                                                                                       ggACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGGAATTTTAAt  >  1:98487/1‑93 (MQ=255)

TATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGAAGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGGAATTTTAAT  >  NC_000913/2924968‑2925147

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGAAGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGGAATTTTAATGAAC  >  NC_000913/2924965‑2925151

TGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGAC                                                                                               <  SRR4302533.3552415/94‑1 (MQ=60)

TGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGAC                                                                                               <  SRR4302533.4601605/94‑1 (MQ=60)

TGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGAC                                                                                               <  SRR4302533.523130/94‑1 (MQ=60)

TGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGAC                                                                                               <  SRR4302533.3855222/94‑1 (MQ=60)

 GGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACG                                                                                              <  SRR4302533.4316709/94‑1 (MQ=60)

   TATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCG                                                                                            >  SRR4302533.6194737/1‑94 (MQ=60)

   TATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCG                                                                                            <  SRR4302533.2858839/94‑1 (MQ=60)

   TATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCG                                                                                            <  SRR4302533.5236387/94‑1 (MQ=60)

      GACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTT                                                                                         <  SRR4302533.1695994/94‑1 (MQ=60)

        CAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGT                                                                                       <  SRR4302533.4912913/94‑1 (MQ=60)

         AGAGCCGTCGATTATCGCGGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTC                                                                                      <  SRR4302533.1531709/94‑1 (MQ=60)

         AGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTC                                                                                      <  SRR4302533.1860109/94‑1 (MQ=60)

         AGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTC                                                                                      >  SRR4302533.201674/1‑94 (MQ=60)

          GAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCC                                                                                     <  SRR4302533.4064552/94‑1 (MQ=60)

          GAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCC                                                                                     <  SRR4302533.3238764/94‑1 (MQ=60)

          GAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCC                                                                                     <  SRR4302533.2136934/94‑1 (MQ=60)

           AGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCG                                                                                    >  SRR4302533.2098295/1‑94 (MQ=60)

            GCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGT                                                                                   >  SRR4302533.3186682/1‑94 (MQ=60)

             CCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTGTGTCCGTA                                                                                  >  SRR4302533.1349539/1‑94 (MQ=60)

              CGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTAT                                                                                 <  SRR4302533.5303785/94‑1 (MQ=60)

              CGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTAT                                                                                 >  SRR4302533.2531660/1‑94 (MQ=60)

               GTCTATTATCTCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATC                                                                                <  SRR4302533.2438637/94‑1 (MQ=60)

               GTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATC                                                                                >  SRR4302533.45142/1‑94 (MQ=60)

                 CGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGC                                                                              >  SRR4302533.34309/1‑94 (MQ=60)

                 CGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTATCCGTATCGC                                                                              >  SRR4302533.5429243/1‑94 (MQ=60)

                  GATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCT                                                                             <  SRR4302533.2166769/94‑1 (MQ=60)

                  GATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCT                                                                             >  SRR4302533.6259046/1‑94 (MQ=60)

                  GATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCT                                                                             >  SRR4302533.1642554/1‑94 (MQ=60)

                  GATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCT                                                                             >  SRR4302533.723731/1‑94 (MQ=60)

                     TATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCTAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCAC                                                                          <  SRR4302533.3404514/94‑1 (MQ=60)

                     TATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCAC                                                                          <  SRR4302533.850497/94‑1 (MQ=60)

                        CGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGT                                                                       >  SRR4302533.559146/1‑94 (MQ=60)

                         GCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTA                                                                      <  SRR4302533.3842564/94‑1 (MQ=60)

                         GCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTA                                                                      >  SRR4302533.4118380/1‑94 (MQ=60)

                          CCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTAT                                                                     <  SRR4302533.946597/94‑1 (MQ=60)

                           CGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATC                                                                    >  SRR4302533.6240108/1‑94 (MQ=60)

                            GCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCA                                                                   <  SRR4302533.6077501/94‑1 (MQ=60)

                            GCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCA                                                                   >  SRR4302533.2147648/1‑94 (MQ=60)

                              TGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATT                                                                 >  SRR4302533.4317805/1‑94 (MQ=60)

                              TGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATT                                                                 <  SRR4302533.1968097/94‑1 (MQ=60)

                               GAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTA                                                                >  SRR4302533.4552164/1‑94 (MQ=60)

                               GAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTA                                                                >  SRR4302533.1617121/1‑94 (MQ=60)

                                AACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTAT                                                               <  SRR4302533.5960334/94‑1 (MQ=60)

                                AACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTAT                                                               <  SRR4302533.2230606/94‑1 (MQ=60)

                                 ACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATC                                                              <  SRR4302533.1017248/94‑1 (MQ=60)

                                   CGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTT                                                            >  SRR4302533.3701413/1‑94 (MQ=60)

                                   CGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTT                                                            <  SRR4302533.4894576/94‑1 (MQ=60)

                                    GCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTC                                                           >  SRR4302533.3012768/1‑94 (MQ=60)

                                     CCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCC                                                          <  SRR4302533.3417022/94‑1 (MQ=60)

                                      CTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCC                                                         <  SRR4302533.3639283/94‑1 (MQ=60)

                                      CTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCC                                                         >  SRR4302533.5912709/1‑94 (MQ=60)

                                      CTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCC                                                         <  SRR4302533.5895155/94‑1 (MQ=60)

                                      CTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGGTTGTCCGTATCGCTCACTGGATCATTATCTTCCC                                                         >  SRR4302533.4929623/1‑94 (MQ=60)

                                       TAGCCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCT                                                        <  SRR4302533.5339562/94‑1 (MQ=60)

                                       TAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCT                                                        <  SRR4302533.5511287/94‑1 (MQ=60)

                                       TAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCT                                                        <  SRR4302533.5773468/94‑1 (MQ=60)

                                       TAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCT                                                        <  SRR4302533.6094160/94‑1 (MQ=60)

                                        AACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTG                                                       <  SRR4302533.675465/94‑1 (MQ=60)

                                        AACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTG                                                       <  SRR4302533.4399683/94‑1 (MQ=60)

                                        AACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTG                                                       >  SRR4302533.4131473/1‑94 (MQ=60)

                                         ACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGG                                                      <  SRR4302533.5213740/94‑1 (MQ=60)

                                         ACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGG                                                      >  SRR4302533.2488641/1‑94 (MQ=60)

                                          CCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGC                                                     >  SRR4302533.487304/1‑94 (MQ=60)

                                          CCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGC                                                     >  SRR4302533.953415/1‑94 (MQ=60)

                                           CCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCG                                                    >  SRR4302533.4356647/1‑94 (MQ=60)

                                           CCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCG                                                    >  SRR4302533.5848342/1‑94 (MQ=60)

                                             GCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGT                                                  <  SRR4302533.1679508/94‑1 (MQ=60)

                                             GCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGT                                                  >  SRR4302533.3109455/1‑94 (MQ=60)

                                              CTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTG                                                 >  SRR4302533.5222060/1‑94 (MQ=60)

                                               TGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGT                                                >  SRR4302533.468051/1‑94 (MQ=60)

                                               TGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGT                                                >  SRR4302533.5595986/1‑94 (MQ=60)

                                                GGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTG                                               <  SRR4302533.2623840/94‑1 (MQ=60)

                                                 GTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGG                                              <  SRR4302533.3973314/94‑1 (MQ=60)

                                                  TCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGG                                             <  SRR4302533.2483158/94‑1 (MQ=60)

                                                   CAACGAATTGATCATCATGCGAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGT                                            <  SRR4302533.831771/94‑1 (MQ=60)

                                                   CAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGT                                            <  SRR4302533.5413495/94‑1 (MQ=60)

                                                   CAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGT                                            >  SRR4302533.3466201/1‑94 (MQ=60)

                                                     ACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTAC                                          <  SRR4302533.1032500/94‑1 (MQ=60)

                                                      CGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACG                                         <  SRR4302533.50199/94‑1 (MQ=60)

                                                      CGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACG                                         <  SRR4302533.1126620/94‑1 (MQ=60)

                                                      CGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACG                                         <  SRR4302533.3539072/94‑1 (MQ=60)

                                                      CGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACG                                         >  SRR4302533.4791738/1‑94 (MQ=60)

                                                       GAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGG                                        <  SRR4302533.5258080/94‑1 (MQ=60)

                                                       GAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGG                                        >  SRR4302533.4997997/1‑94 (MQ=60)

                                                       GAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGG                                        >  SRR4302533.3804069/1‑94 (MQ=60)

                                                       GAATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGGACGG                                        >  SRR4302533.2434032/1‑94 (MQ=60)

                                                        AATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGC                                       >  SRR4302533.1648704/1‑94 (MQ=60)

                                                        AATTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGC                                       <  SRR4302533.236115/94‑1 (MQ=60)

                                                          TTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAG                                     <  SRR4302533.867892/94‑1 (MQ=60)

                                                          TTGATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAG                                     <  SRR4302533.3718522/94‑1 (MQ=60)

                                                             ATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAG                                  <  SRR4302533.4700281/94‑1 (MQ=60)

                                                             ATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAG                                  >  SRR4302533.3280382/1‑94 (MQ=60)

                                                             ATCATCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGGATCATTATCTTCCCTGGCGGTGGGGGTACGGCAGAAG                                  >  SRR4302533.2763809/1‑94 (MQ=60)

                                                                 TCATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTT                              <  SRR4302533.1415228/94‑1 (MQ=60)

                                                                  TATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTG                             <  SRR4302533.1769019/94‑1 (MQ=60)

                                                                  CATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTG                             >  SRR4302533.3025310/1‑94 (MQ=60)

                                                                  CATGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTG                             <  SRR4302533.3463535/94‑1 (MQ=60)

                                                                    TGCCAGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCT                           <  SRR4302533.3943435/94‑1 (MQ=60)

                                                                       CAGATATCGAAAAACGTCTGGACGCGCTTGTCCGTATTGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGGTGCTCGA                        >  SRR4302533.209230/1‑94 (MQ=60)

                                                                        AGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTAT                       >  SRR4302533.5568587/1‑94 (MQ=60)

                                                                        AGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTAT                       >  SRR4302533.2727945/1‑94 (MQ=60)

                                                                        AGATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTAT                       <  SRR4302533.42249/94‑1 (MQ=60)

                                                                         GATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATT                      >  SRR4302533.1315500/1‑94 (MQ=60)

                                                                         GATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATT                      >  SRR4302533.3218509/1‑94 (MQ=60)

                                                                          ATATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTT                     <  SRR4302533.133770/94‑1 (MQ=60)

                                                                           TATCGAAAAACGTCTGGACGCGTTGGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTG                    <  SRR4302533.1079129/94‑1 (MQ=60)

                                                                            ATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCTGAAGAGTTGCTCTATTTGC                   >  SRR4302533.1427647/1‑94 (MQ=60)

                                                                            ATCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGC                   >  SRR4302533.553414/1‑94 (MQ=60)

                                                                             TCGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCT                  <  SRR4302533.3447892/94‑1 (MQ=60)

                                                                              CGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTG                 >  SRR4302533.3312852/1‑94 (MQ=60)

                                                                              CGAAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTG                 >  SRR4302533.3065623/1‑94 (MQ=60)

                                                                                AAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGG               >  SRR4302533.5742539/1‑94 (MQ=60)

                                                                                AAAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGG               >  SRR4302533.2192945/1‑94 (MQ=60)

                                                                                 AAAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGGA              <  SRR4302533.846860/94‑1 (MQ=60)

                                                                                 AAAACGTCTGGACGCGCTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGCGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGGA              >  SRR4302533.1449277/1‑94 (MQ=60)

                                                                                  AAACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGGAA             >  SRR4302533.1425988/1‑94 (MQ=60)

                                                                                    ACGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGGAATT           <  SRR4302533.5912182/94‑1 (MQ=60)

                                                                                     CGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGGAATTT          <  SRR4302533.3407738/94‑1 (MQ=60)

                                                                                     CGTCTGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGGAATTT          >  SRR4302533.4717545/1‑94 (MQ=60)

                                                                                         TGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGGAATTTTAAT      >  SRR4302533.99097/1‑94 (MQ=60)

                                                                                         TGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGGAATTTTAAT      <  SRR4302533.4748310/94‑1 (MQ=60)

                                                                                         TGGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGGAATTTTAAT      >  SRR4302533.5441332/1‑94 (MQ=60)

                                                                                          GGACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGGAATTTTAATG     >  SRR4302533.4624472/1‑94 (MQ=60)

                                                                                           GACGCGTTTGTCCGTATCGCTCACGGTTTCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGGAATTTTAATGA    <  SRR4302533.5212999/94‑1 (MQ=60)

                                                                                            ACGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGGAATTTTAATGAA   <  SRR4302533.217811/94‑1 (MQ=60)

                                                                                             CGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGGAATTTTAATGAAC  <  SRR4302533.4863565/94‑1 (MQ=60)

                                                                                             CGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGGAATTTTAATGAAC  <  SRR4302533.5284295/94‑1 (MQ=60)

TGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCGAAAAACGTCTGGAAGCGTTTGTCCGTATCGCTCACGGTATCATTATCTTCCCTGGCGGTGTGGGTACGGCAGAAGAGTTGCTCTATTTGCTGGGAATTTTAATGAAC  >  NC_000913/2924965‑2925151

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`