Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,956,304 A→G G201G (GGT→GGC)  ptr ← protease III

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,956,3040AG100.0% 674.3 / NA 207G201G (GGT→GGC) ptrprotease III
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (122/85);  total (122/85)

Only 100 of 218 total aligned reads displayed.

CATCAAATTGGCGGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTACCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCACGCGTACGCGCCA  >  NC_000913/2956214‑2956392
                                                                                          |                                                                                        
catcaAATTGGCGGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTgcc                                                                                        >  2:3554430/1‑93 (MQ=255)
 atcaAATTGGCGGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTgcca                                                                                       >  1:4145273/1‑93 (MQ=255)
 atcaAATTGGCGGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTgcca                                                                                       >  1:2238124/1‑93 (MQ=255)
   caAATTGGCGGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTgccacc                                                                                     <  2:1720491/93‑1 (MQ=255)
    aaaTTGGCGGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGCTGccacca                                                                                    >  2:5058068/1‑93 (MQ=255)
      aTTGGCGGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGa                                                                                  <  1:5931996/93‑1 (MQ=255)
       ttGGCGGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGaa                                                                                 >  2:2233880/1‑93 (MQ=255)
       ttGGCGGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGaa                                                                                 <  2:4865064/93‑1 (MQ=255)
         ggCGGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGaaaa                                                                               <  2:2757222/93‑1 (MQ=255)
         ggCGGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGaaaa                                                                               <  2:1646839/93‑1 (MQ=255)
          gCGGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAAc                                                                              <  2:5382206/93‑1 (MQ=255)
             gAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCTCCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACttt                                                                           <  2:2425354/93‑1 (MQ=255)
             gAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACttt                                                                           >  2:1063655/1‑93 (MQ=255)
             gAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACttt                                                                           <  1:4772318/93‑1 (MQ=255)
             gAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACttt                                                                           <  2:255382/93‑1 (MQ=255)
             gAATAGTACTTCTCGTGGAAATCTTTAAGCGCCTGCTGCACCGGATTACCAGGATTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACttt                                                                           >  2:5890646/1‑93 (MQ=255)
              aaTAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTg                                                                          <  1:1482681/93‑1 (MQ=255)
               aTAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGa                                                                         >  2:1569105/1‑93 (MQ=255)
               aTAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGa                                                                         >  2:4761612/1‑93 (MQ=255)
               aTAGTACGTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGa                                                                         <  2:1911470/93‑1 (MQ=255)
                tAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGaa                                                                        <  1:2665873/93‑1 (MQ=255)
                tAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGaa                                                                        >  1:4122731/1‑93 (MQ=255)
                tAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGaa                                                                        >  1:4646041/1‑93 (MQ=255)
                  gTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAAcc                                                                      >  1:5448358/1‑93 (MQ=255)
                  gTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAAcc                                                                      >  2:4557394/1‑93 (MQ=255)
                   tACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCg                                                                     <  1:37600/93‑1 (MQ=255)
                   tACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCg                                                                     >  2:6293883/1‑93 (MQ=255)
                   tACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCg                                                                     >  1:1547917/1‑93 (MQ=255)
                   tACTTCTCGTGGAAATCTTTCAGAGCCTGCTGCATCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCg                                                                     <  1:1051690/93‑1 (MQ=255)
                     cTTCTCGTGGAAATCTTTCAGCGCCTTCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCggg                                                                   <  2:5092115/93‑1 (MQ=255)
                     cTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCggg                                                                   >  1:6260775/1‑93 (MQ=255)
                      ttCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCgggg                                                                  <  1:3420585/93‑1 (MQ=255)
                      ttCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCgggg                                                                  >  1:3389964/1‑93 (MQ=255)
                       tctcGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGgt                                                                 >  1:5236809/1‑93 (MQ=255)
                         tcGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGgtgt                                                               >  2:1118532/1‑93 (MQ=255)
                         tcGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGgtgt                                                               <  1:3541572/93‑1 (MQ=255)
                         tcGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGgtgt                                                               >  1:1130006/1‑93 (MQ=255)
                         tcGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGgtgt                                                               >  2:5847092/1‑93 (MQ=255)
                         tcGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGgtgt                                                               >  1:5795872/1‑93 (MQ=255)
                         tcGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGgtgt                                                               <  1:25320/93‑1 (MQ=255)
                           gTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGATGCCACCAGAAAACTTTGAACCGGGGTGTGc                                                             >  2:4140979/1‑93 (MQ=255)
                             tgAAAGCTTTTAGCGCGTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCg                                                           <  2:4118998/92‑1 (MQ=255)
                              gAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCgg                                                          <  2:104181/93‑1 (MQ=255)
                                aaTCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGt                                                        >  1:138436/1‑93 (MQ=255)
                                aaTCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGt                                                        <  2:6018399/93‑1 (MQ=255)
                                aaTCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGt                                                        >  1:676972/1‑93 (MQ=255)
                                aaTCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGt                                                        >  1:5044569/1‑93 (MQ=255)
                                     ttCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATg                                                   <  2:727788/93‑1 (MQ=255)
                                      tCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATgg                                                  <  2:3952853/93‑1 (MQ=255)
                                      tCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATgg                                                  <  2:2728643/93‑1 (MQ=255)
                                      tCAGCACCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATgg                                                  >  1:4959467/1‑93 (MQ=255)
                                        aGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGGGTGCCGGGTTAATGGtt                                                >  1:77032/1‑93 (MQ=255)
                                         gcgcCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGttt                                               >  1:3111109/1‑93 (MQ=255)
                                          cgcCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTc                                              <  1:1001731/93‑1 (MQ=255)
                                          cgcCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTc                                              <  2:4216035/93‑1 (MQ=255)
                                          cgcCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGGTAATGGTTTc                                              >  2:3694209/1‑93 (MQ=255)
                                            ccTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTg                                            <  2:5819150/93‑1 (MQ=255)
                                              tgctgcACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTgcg                                          >  2:306266/1‑93 (MQ=255)
                                              tgctgcACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTgcg                                          >  2:497062/1‑93 (MQ=255)
                                               gctgcACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTgcgc                                         >  1:3205336/1‑93 (MQ=255)
                                                 tgcACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTg                                       >  1:4402765/1‑93 (MQ=255)
                                                  gcACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGa                                      >  2:4881348/1‑93 (MQ=255)
                                                    aCCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGGGTGCCGGGTTAATGGTTTCTGCGCTGAcc                                    >  2:53338/1‑93 (MQ=255)
                                                       ggATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCtgt                                 <  1:2971575/93‑1 (MQ=255)
                                                       ggATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCtgt                                 >  1:159173/1‑93 (MQ=255)
                                                        gATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCtgtg                                >  2:4433901/1‑93 (MQ=255)
                                                          ttACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGcc                              >  2:4645392/1‑93 (MQ=255)
                                                          ttACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGcc                              <  1:6117248/93‑1 (MQ=255)
                                                           tACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCa                             <  1:4511509/93‑1 (MQ=255)
                                                           tACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCa                             >  1:1777141/1‑93 (MQ=255)
                                                            tccAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCAt                            <  1:2015748/92‑1 (MQ=255)
                                                            aCCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCAt                            <  1:2430123/93‑1 (MQ=255)
                                                            aCCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCAt                            >  2:4477990/1‑93 (MQ=255)
                                                             ccAGGTTTGTCGCTTAAAGATTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATg                           >  2:6127907/1‑93 (MQ=255)
                                                               aGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGCGCCATgcg                         >  2:2051674/1‑93 (MQ=255)
                                                                ggTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATgcgc                        >  2:1748004/1‑93 (MQ=255)
                                                                 gTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCa                       >  2:666833/1‑93 (MQ=255)
                                                                   ttGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATc                     <  2:5609079/93‑1 (MQ=255)
                                                                     gTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATccc                   >  2:2202668/1‑93 (MQ=255)
                                                                      tCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCg                  >  2:1220608/1‑93 (MQ=255)
                                                                      tCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCg                  >  1:5619024/1‑93 (MQ=255)
                                                                      tCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCg                  <  2:3212271/93‑1 (MQ=255)
                                                                       cGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGt                 >  2:2621696/1‑93 (MQ=255)
                                                                        gCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTc                <  2:640868/93‑1 (MQ=255)
                                                                        gCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTc                <  1:1661660/93‑1 (MQ=255)
                                                                         cTTAAAGTTTCGAGGTTGCCACCCGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCa               >  1:6025121/1‑93 (MQ=255)
                                                                          ttAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCAc              >  2:3395231/1‑93 (MQ=255)
                                                                          ttAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCAc              >  2:5689457/1‑93 (MQ=255)
                                                                           tAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCAcg             >  2:1172229/1‑93 (MQ=255)
                                                                           tAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCAcg             >  2:4353191/1‑93 (MQ=255)
                                                                            aaaGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCAcgc            >  1:5739457/1‑93 (MQ=255)
                                                                            aaaGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCAcgc            >  1:1215771/1‑93 (MQ=255)
                                                                              aGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCACGCGt          >  2:5907438/1‑93 (MQ=255)
                                                                               gTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGCCCTGTGCCATGCGCATCCCGTCACGCGTa         <  2:1523468/93‑1 (MQ=255)
                                                                                 ttCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCACGCGTAcg       <  1:1672377/93‑1 (MQ=255)
                                                                                 ttCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCACGCGTAcg       <  1:1264142/93‑1 (MQ=255)
                                                                                 ttCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCACGCGTAcg       >  2:4378884/1‑93 (MQ=255)
                                                                                    gAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCACGCGTACgcgc    >  1:2550520/1‑93 (MQ=255)
                                                                                     aGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCACGCGTACGCGcc   >  2:3665935/1‑93 (MQ=255)
                                                                                      ggTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCACGCGTACGCGCCa  <  1:4207686/93‑1 (MQ=255)
                                                                                          |                                                                                        
CATCAAATTGGCGGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTACCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCACGCGTACGCGCCA  >  NC_000913/2956214‑2956392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTTCATCAAATTGGCGGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTACCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCACGCGTACGCGCCATGGT  >  NC_000913/2956211‑2956396
                                                                                             |                                                                                            
CTTCATCAAATTGGCGGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTG                                                                                              >  SRR4302533.159602/1‑94 (MQ=60)
CTTCATCAAATTGGCGGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTG                                                                                              >  SRR4302533.2277200/1‑94 (MQ=60)
CTTCATCAAATTGGCGGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTG                                                                                              <  SRR4302533.306311/94‑1 (MQ=60)
CTTCATCAAATTGGCGGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTG                                                                                              <  SRR4302533.4128473/94‑1 (MQ=60)
 TTCATCAAATTGGCGGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGC                                                                                             >  SRR4302533.931699/1‑94 (MQ=60)
 TTCATCAAATTGGCGGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGC                                                                                             >  SRR4302533.5234829/1‑94 (MQ=60)
   CATCAAATTGGCGGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCA                                                                                           >  SRR4302533.4170396/1‑94 (MQ=60)
   CATCAAATTGGCGGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCA                                                                                           >  SRR4302533.2251956/1‑94 (MQ=60)
    ATCAAATTGGCGGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCAC                                                                                          <  SRR4302533.574758/94‑1 (MQ=60)
       AAATTGGCGGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAG                                                                                       >  SRR4302533.3408925/1‑94 (MQ=60)
         ATTGGCGGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAA                                                                                     <  SRR4302533.5967857/94‑1 (MQ=60)
            GGCGGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAAC                                                                                  >  SRR4302533.4677960/1‑94 (MQ=60)
            GGCGCAATAGTACTTCTCGTGGAACTCTCTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCCAGGTTGCCACCAGAAAAC                                                                                  <  SRR4302533.5638491/94‑1 (MQ=60)
               GGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTT                                                                               >  SRR4302533.4344467/1‑94 (MQ=60)
               GGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTT                                                                               >  SRR4302533.345899/1‑94 (MQ=60)
               GGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTT                                                                               <  SRR4302533.1679279/94‑1 (MQ=60)
                GAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTG                                                                              <  SRR4302533.4801240/94‑1 (MQ=60)
                GAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTG                                                                              <  SRR4302533.3434101/94‑1 (MQ=60)
                 AATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGA                                                                             <  SRR4302533.2802211/94‑1 (MQ=60)
                 AATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGA                                                                             <  SRR4302533.1015442/94‑1 (MQ=60)
                 AATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGA                                                                             <  SRR4302533.1491632/94‑1 (MQ=60)
                  ATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAA                                                                            >  SRR4302533.4147761/1‑94 (MQ=60)
                  ATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAA                                                                            >  SRR4302533.1860346/1‑94 (MQ=60)
                  ATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAA                                                                            >  SRR4302533.4674197/1‑94 (MQ=60)
                  ATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAA                                                                            >  SRR4302533.5774866/1‑94 (MQ=60)
                   TAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAAC                                                                           <  SRR4302533.2682230/94‑1 (MQ=60)
                    AGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACC                                                                          <  SRR4302533.6008742/94‑1 (MQ=60)
                    AGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACC                                                                          >  SRR4302533.5481178/1‑94 (MQ=60)
                    AGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGCTGCCACCAGAAAACTTTGAACC                                                                          >  SRR4302533.594689/1‑94 (MQ=60)
                     GTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCG                                                                         >  SRR4302533.1557244/1‑94 (MQ=60)
                      TACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGG                                                                        <  SRR4302533.37849/94‑1 (MQ=60)
                      TACTTCTCGTGGAAATCTTTCAGAGCCTGCTGCATCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGG                                                                        <  SRR4302533.1057882/94‑1 (MQ=60)
                       ACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGG                                                                       >  SRR4302533.6298206/1‑94 (MQ=60)
                        CTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGG                                                                      >  SRR4302533.3410899/1‑94 (MQ=60)
                        CTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGG                                                                      >  SRR4302533.1557608/1‑94 (MQ=60)
                         TTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCTACCAGAAAACTTTGAACCGGGGT                                                                     >  SRR4302533.3450148/1‑94 (MQ=60)
                         TTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGT                                                                     <  SRR4302533.3441721/94‑1 (MQ=60)
                         TTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGT                                                                     >  SRR4302533.5268295/1‑94 (MQ=60)
                         TTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGT                                                                     >  SRR4302533.1550424/1‑94 (MQ=60)
                         TTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGT                                                                     <  SRR4302533.5080654/94‑1 (MQ=60)
                           CTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGT                                                                   >  SRR4302533.2532737/1‑94 (MQ=60)
                           CTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGT                                                                   <  SRR4302533.1266119/94‑1 (MQ=60)
                           CTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGT                                                                   >  SRR4302533.5830889/1‑94 (MQ=60)
                           CTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGT                                                                   >  SRR4302533.1136721/1‑94 (MQ=60)
                            TCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTG                                                                  <  SRR4302533.25489/94‑1 (MQ=60)
                            TCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTG                                                                  <  SRR4302533.3563394/94‑1 (MQ=60)
                              GTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCC                                                                >  SRR4302533.1476345/1‑94 (MQ=60)
                                GGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGG                                                              >  SRR4302533.5948196/1‑94 (MQ=60)
                                  AAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGT                                                            >  SRR4302533.3730935/1‑94 (MQ=60)
                                  AAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGT                                                            >  SRR4302533.139317/1‑94 (MQ=60)
                                  AAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGT                                                            >  SRR4302533.5075092/1‑94 (MQ=60)
                                  AAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGT                                                            >  SRR4302533.680975/1‑94 (MQ=60)
                                  AAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGT                                                            >  SRR4302533.959381/1‑94 (MQ=60)
                                       TTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATG                                                       <  SRR4302533.2333422/94‑1 (MQ=60)
                                       TTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATG                                                       <  SRR4302533.1907165/94‑1 (MQ=60)
                                        TTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGG                                                      <  SRR4302533.4202380/94‑1 (MQ=60)
                                        TTCAGCACCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGG                                                      >  SRR4302533.4989513/1‑94 (MQ=60)
                                          CAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGGGTGCCGGGTTAATGGTT                                                    >  SRR4302533.77530/1‑94 (MQ=60)
                                           AGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTT                                                   <  SRR4302533.3041556/94‑1 (MQ=60)
                                           AGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTT                                                   >  SRR4302533.3130234/1‑94 (MQ=60)
                                             CGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCT                                                 <  SRR4302533.1007581/94‑1 (MQ=60)
                                             CGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCT                                                 <  SRR4302533.2667876/94‑1 (MQ=60)
                                             CGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCT                                                 <  SRR4302533.1607264/94‑1 (MQ=60)
                                              GCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTG                                                <  SRR4302533.5268331/94‑1 (MQ=60)
                                              GCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTG                                                <  SRR4302533.4480988/94‑1 (MQ=60)
                                               CCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGC                                               >  SRR4302533.858555/1‑94 (MQ=60)
                                               CCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGC                                               <  SRR4302533.6161627/94‑1 (MQ=60)
                                                CTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCG                                              >  SRR4302533.501355/1‑94 (MQ=60)
                                                 TGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGC                                             >  SRR4302533.1145091/1‑94 (MQ=60)
                                                 TGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGC                                             >  SRR4302533.3225069/1‑94 (MQ=60)
                                                  GCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCT                                            >  SRR4302533.638565/1‑94 (MQ=60)
                                                   CTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTG                                           >  SRR4302533.4429347/1‑94 (MQ=60)
                                                      CACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACC                                        <  SRR4302533.4597516/94‑1 (MQ=60)
                                                         CGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGT                                     >  SRR4302533.160189/1‑94 (MQ=60)
                                                          GGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTG                                    <  SRR4302533.2193285/94‑1 (MQ=60)
                                                          GGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTG                                    <  SRR4302533.2989756/94‑1 (MQ=60)
                                                             TTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCA                                 >  SRR4302533.1787959/1‑94 (MQ=60)
                                                             TTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCA                                 <  SRR4302533.6154148/94‑1 (MQ=60)
                                                              TACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCAT                                <  SRR4302533.4538829/94‑1 (MQ=60)
                                                               TCCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATG                               <  SRR4302533.2028166/94‑1 (MQ=60)
                                                               ACCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATG                               <  SRR4302533.2445144/94‑1 (MQ=60)
                                                                CCAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGC                              >  SRR4302533.1758295/1‑94 (MQ=60)
                                                                CCAGGTTTGTCGCTTAAAGTTTCGAGGGTGCCAACAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGC                              >  SRR4302533.2575466/1‑94 (MQ=60)
                                                                 CAGGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCG                             >  SRR4302533.10868/1‑94 (MQ=60)
                                                                   GGTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCA                           >  SRR4302533.2562397/1‑94 (MQ=60)
                                                                    GTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCAT                          <  SRR4302533.436620/94‑1 (MQ=60)
                                                                    GTTTGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCAT                          <  SRR4302533.1390695/94‑1 (MQ=60)
                                                                       TGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCC                       <  SRR4302533.4161520/94‑1 (MQ=60)
                                                                       TGTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCC                       <  SRR4302533.3839990/94‑1 (MQ=60)
                                                                        GTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCG                      >  SRR4302533.497085/1‑94 (MQ=60)
                                                                        GTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCG                      >  SRR4302533.5652986/1‑94 (MQ=60)
                                                                        GTCGCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCG                      <  SRR4302533.701005/94‑1 (MQ=60)
                                                                           GCTTAAAGTTTCGAGGTTGCCACCCGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCA                   >  SRR4302533.6061631/1‑94 (MQ=60)
                                                                           GCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCA                   >  SRR4302533.6076429/1‑94 (MQ=60)
                                                                           GCTTAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCA                   <  SRR4302533.1671706/94‑1 (MQ=60)
                                                                              TAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCACGC                >  SRR4302533.5774093/1‑94 (MQ=60)
                                                                              TAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCACGC                >  SRR4302533.1223074/1‑94 (MQ=60)
                                                                              TAAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCACGC                >  SRR4302533.1409241/1‑94 (MQ=60)
                                                                               AAAGTTTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCACGCG               >  SRR4302533.3219813/1‑94 (MQ=60)
                                                                                    TTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCACGCGTACGC          <  SRR4302533.5093755/94‑1 (MQ=60)
                                                                                    TTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCACGCGTACGC          <  SRR4302533.1682485/94‑1 (MQ=60)
                                                                                    TTCGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCACGCGTACGC          <  SRR4302533.1271707/94‑1 (MQ=60)
                                                                                      CGAGGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCACGCGTACGCGC        >  SRR4302533.2566216/1‑94 (MQ=60)
                                                                                         GGTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCACGCGTACGCGCCAT     <  SRR4302533.4233142/94‑1 (MQ=60)
                                                                                          GTTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCACGCGTACGCGCCATG    >  SRR4302533.381190/1‑94 (MQ=60)
                                                                                           TTGCCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCACGCGTACGCGCCATGG   >  SRR4302533.1341693/1‑94 (MQ=60)
                                                                                            TGCCACCAGAAAACTTGGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCACGCGTACGCGCCATGGT  <  SRR4302533.456556/94‑1 (MQ=60)
                                                                                             |                                                                                            
CTTCATCAAATTGGCGGAATAGTACTTCTCGTGGAAATCTTTCAGCGCCTGCTGCACCGGATTACCAGGTTTGTCGCTTAAAGTTTCGAGGTTACCACCAGAAAACTTTGAACCGGGGTGTGCCGGGTTAATGGTTTCTGCGCTGACCTGTGCCATGCGCATCCCGTCACGCGTACGCGCCATGGT  >  NC_000913/2956211‑2956396

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑