Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,958,357	G→A	S698S (AGC→AGT)	recC ←	RecC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,958,357	0	G	A	100.0%	842.0 / NA	232	S698S (AGC→AGT)	recC	RecC
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (135/97); total (135/97)

Only 100 of 236 total aligned reads displayed.

ATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGGCTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAACGGAATTGA  >  NC_000913/2958267‑2958446

ataGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACt                                                                                         >  2:3060239/1‑93 (MQ=255)

ataGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACt                                                                                         >  2:5925706/1‑93 (MQ=255)

  agagTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACtca                                                                                       <  2:4372451/93‑1 (MQ=255)

   gagTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACtcat                                                                                      >  2:262015/1‑93 (MQ=255)

   gagTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACtcat                                                                                      >  2:4042368/1‑93 (MQ=255)

    agTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACtcatc                                                                                     <  2:2189082/93‑1 (MQ=255)

    agTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACtcatc                                                                                     <  2:1387703/93‑1 (MQ=255)

     gTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACtcatca                                                                                    <  1:5134708/93‑1 (MQ=255)

     gTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACtcatca                                                                                    <  1:1635502/93‑1 (MQ=255)

     gTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACtcatca                                                                                    <  2:5248541/93‑1 (MQ=255)

      tttttGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAg                                                                                   >  1:3218832/1‑93 (MQ=255)

       ttttGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAgg                                                                                  >  2:1037410/1‑93 (MQ=255)

         ttGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTc                                                                                <  1:4110216/93‑1 (MQ=255)

         ttGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTc                                                                                <  1:3051366/93‑1 (MQ=255)

           gctgcGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCaa                                                                              <  2:2358423/93‑1 (MQ=255)

             tgcGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAg                                                                            <  1:5572618/93‑1 (MQ=255)

              gcgcGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCaaatc                                                                           >  1:475900/1‑91 (MQ=255)

              gcgcGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGc                                                                           >  2:4503870/1‑93 (MQ=255)

              gcgcGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGc                                                                           <  2:5459827/93‑1 (MQ=255)

                 cgGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCa                                                                        >  2:3942667/1‑93 (MQ=255)

                 cgGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCa                                                                        >  2:4787170/1‑93 (MQ=255)

                  ggAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCaa                                                                       <  2:273130/93‑1 (MQ=255)

                   gAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCCAAGCCCaag                                                                      >  1:5285517/1‑92 (MQ=255)

                   gAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAAt                                                                      >  1:1268632/1‑93 (MQ=255)

                   gAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAAt                                                                      <  1:716068/93‑1 (MQ=255)

                    aaaTTAACTCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATg                                                                     >  2:6138011/1‑93 (MQ=255)

                    aaaTTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATg                                                                     <  2:5302915/93‑1 (MQ=255)

                     aaTTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATgg                                                                    <  2:3271155/93‑1 (MQ=255)

                      aTTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGgc                                                                   >  1:5395670/1‑93 (MQ=255)

                       ttAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGgcg                                                                  >  1:803578/1‑93 (MQ=255)

                        tAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGgcgc                                                                 >  2:5621177/1‑93 (MQ=255)

                        tAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGgcgc                                                                 <  1:348666/93‑1 (MQ=255)

                             cTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCt                                                            >  1:4469636/1‑93 (MQ=255)

                             cTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCt                                                            >  1:168680/1‑93 (MQ=255)

                              ttCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTg                                                           <  2:4551425/93‑1 (MQ=255)

                              ttCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTg                                                           >  1:1528442/1‑93 (MQ=255)

                               tCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGa                                                          >  1:4519631/1‑93 (MQ=255)

                                ccgggAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGAc                                                         <  2:2871574/90‑1 (MQ=255)

                                ccAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGAc                                                         <  2:1496262/93‑1 (MQ=255)

                                 cAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACg                                                        >  2:2530512/1‑93 (MQ=255)

                                 cAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACg                                                        >  2:4990535/1‑93 (MQ=255)

                                  aGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGt                                                       >  1:5669591/1‑93 (MQ=255)

                                  aGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGt                                                       <  1:6267374/93‑1 (MQ=255)

                                   ggAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTg                                                      <  1:4617877/93‑1 (MQ=255)

                                   ggAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGACCAATGGCGCAAGCTGACGTg                                                      >  1:1176011/1‑93 (MQ=255)

                                    gAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTgg                                                     >  1:2864818/1‑93 (MQ=255)

                                    gAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTgg                                                     >  2:217933/1‑93 (MQ=255)

                                     aaCAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGa                                                    <  2:3821965/93‑1 (MQ=255)

                                       cAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATa                                                  <  1:5796999/93‑1 (MQ=255)

                                       cAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATa                                                  >  1:947326/1‑93 (MQ=255)

                                       cAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATa                                                  <  2:3179502/93‑1 (MQ=255)

                                        aGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATaa                                                 >  1:249995/1‑93 (MQ=255)

                                         gATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATaaa                                                >  2:1797581/1‑93 (MQ=255)

                                         gATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATaaa                                                <  2:802217/93‑1 (MQ=255)

                                          aTAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAAc                                               <  2:5694487/93‑1 (MQ=255)

                                          aTAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAAc                                               >  1:5109718/1‑93 (MQ=255)

                                            aGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTAACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGc                                             <  1:370261/93‑1 (MQ=255)

                                             gCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGcc                                            >  1:3329615/1‑93 (MQ=255)

                                              cGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCcg                                           <  2:366678/93‑1 (MQ=255)

                                               ggTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCcgt                                          >  1:4646868/1‑93 (MQ=255)

                                               ggTCGTCATCGCGACGGCTACGGTCGCCACGCCTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCcgt                                          >  1:4321413/1‑93 (MQ=255)

                                                gtcgtcATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCcgtc                                         >  1:3779944/1‑93 (MQ=255)

                                                gtcgtcATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCcgtc                                         >  1:1047146/1‑93 (MQ=255)

                                                 tcgtcATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCcgtcg                                        >  1:1718368/1‑93 (MQ=255)

                                                   gtcATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGtt                                      >  2:182113/1‑93 (MQ=255)

                                                    tcATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTc                                     >  2:3379926/1‑93 (MQ=255)

                                                    tcATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTc                                     >  1:1305722/1‑93 (MQ=255)

                                                     cATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCa                                    <  2:1734094/93‑1 (MQ=255)

                                                      aTCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCAt                                   >  2:732881/1‑93 (MQ=255)

                                                      aTCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCAt                                   <  2:4198164/93‑1 (MQ=255)

                                                       tCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCAtt                                  >  1:2079285/1‑93 (MQ=255)

                                                       tCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCAtt                                  <  1:5146681/93‑1 (MQ=255)

                                                          cgACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTccc                               <  2:2068101/93‑1 (MQ=255)

                                                           gACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCca                              >  1:2581522/1‑93 (MQ=255)

                                                            aCGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATACACGCCGTCGTTCATTCCcag                             >  1:3112027/1‑93 (MQ=255)

                                                             cGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCcagc                            >  1:6030051/1‑93 (MQ=255)

                                                              ggCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCcagca                           >  2:3196491/1‑93 (MQ=255)

                                                               gCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCcagcag                          <  1:6104789/93‑1 (MQ=255)

                                                               gCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCcagcag                          <  1:4907747/93‑1 (MQ=255)

                                                                  aCGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCa                       >  1:2150498/1‑93 (MQ=255)

                                                                   cGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCaa                      >  1:4052156/1‑93 (MQ=255)

                                                                    ggTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCaaa                     <  1:4364031/93‑1 (MQ=255)

                                                                     gTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGCCGCAAGCTGACGTGGATAACCCCCGTCGTTCATCCCCAGCAGGCAAAc                    <  2:3628162/93‑1 (MQ=255)

                                                                        gCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCAc                 <  2:4582120/93‑1 (MQ=255)

                                                                         ccACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACt                >  2:4614550/1‑93 (MQ=255)

                                                                          cACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACtt               >  2:5464449/1‑93 (MQ=255)

                                                                          cACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACtt               >  2:5811291/1‑93 (MQ=255)

                                                                           aCGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACttt              >  1:3940744/1‑93 (MQ=255)

                                                                           aCGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACttt              >  1:1344966/1‑93 (MQ=255)

                                                                           aCGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACttt              <  2:3480870/93‑1 (MQ=255)

                                                                           aCGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGACGTCGTTCATTCCCAGCAGGGAAACCACttt              >  2:643269/1‑93 (MQ=255)

                                                                             gCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGa            >  2:82187/1‑93 (MQ=255)

                                                                             gCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAAAGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGa            >  2:5124105/1‑93 (MQ=255)

                                                                              cTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAACCGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGaa           <  2:5527955/93‑1 (MQ=255)

                                                                              cTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGaa           <  1:4592638/93‑1 (MQ=255)

                                                                                    tttCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAACGGAAt     <  2:5876255/93‑1 (MQ=255)

                                                                                    ttgcTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGACGTTCATTCCCAGCAGGCAAACCACTTTGAACGGAAt     <  1:5636200/90‑1 (MQ=255)

                                                                                       cTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAACGGAATTGa  <  2:4928790/93‑1 (MQ=255)

                                                                                       cTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAACGGAATTGa  <  1:3890029/93‑1 (MQ=255)

                                                                                       cTGACTCACCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCAGTCGTTCATTCCCAGCAGGCAAACCACTTTGAACGGAATTGa  <  2:1203107/93‑1 (MQ=255)

ATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGGCTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAACGGAATTGA  >  NC_000913/2958267‑2958446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGGCTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAACGGAATTGAACGC  >  NC_000913/2958264‑2958450

GATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGA                                                                                               <  SRR4302533.3115656/94‑1 (MQ=60)

GATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGA                                                                                               >  SRR4302533.2831688/1‑94 (MQ=60)

GATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGA                                                                                               >  SRR4302533.552221/1‑94 (MQ=60)

 ATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGAC                                                                                              <  SRR4302533.5456220/94‑1 (MQ=60)

 ATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGAC                                                                                              >  SRR4302533.1733113/1‑94 (MQ=60)

 ATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGAC                                                                                              >  SRR4302533.6115212/1‑94 (MQ=60)

    TAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCA                                                                                           <  SRR4302533.3765260/94‑1 (MQ=60)

    TAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCA                                                                                           >  SRR4302533.1283438/1‑94 (MQ=60)

    TAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCA                                                                                           >  SRR4302533.2917312/1‑94 (MQ=60)

    TAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCA                                                                                           >  SRR4302533.57959/1‑94 (MQ=60)

       AGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCA                                                                                        <  SRR4302533.910481/94‑1 (MQ=60)

       AGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCA                                                                                        <  SRR4302533.5671889/94‑1 (MQ=60)

        GTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAG                                                                                       <  SRR4302533.5165730/94‑1 (MQ=60)

        GTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAG                                                                                       >  SRR4302533.3238679/1‑94 (MQ=60)

        GTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAG                                                                                       <  SRR4302533.1645407/94‑1 (MQ=60)

         TTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGG                                                                                      >  SRR4302533.3271072/1‑94 (MQ=60)

            TTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCA                                                                                   <  SRR4302533.4135200/94‑1 (MQ=60)

            TTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCA                                                                                   <  SRR4302533.3070049/94‑1 (MQ=60)

             TGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAA                                                                                  >  SRR4302533.2731562/1‑94 (MQ=60)

               CTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAG                                                                                <  SRR4302533.6180451/94‑1 (MQ=60)

               CTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAC                                                                                >  SRR4302533.5083982/1‑94 (MQ=60)

                TGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAATC                                                                               >  SRR4302533.478740/1‑94 (MQ=60)

                TGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGC                                                                               <  SRR4302533.5606296/94‑1 (MQ=60)

                   GCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCA                                                                            >  SRR4302533.4218106/1‑94 (MQ=60)

                    CGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAA                                                                           >  SRR4302533.923777/1‑94 (MQ=60)

                     GGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCCAAGCCCAAG                                                                          >  SRR4302533.5317177/1‑94 (MQ=60)

                     GGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAAT                                                                          <  SRR4302533.5764580/94‑1 (MQ=60)

                     GGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAAT                                                                          >  SRR4302533.4202902/1‑94 (MQ=60)

                     GGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAAT                                                                          >  SRR4302533.1276226/1‑94 (MQ=60)

                     GGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAAT                                                                          >  SRR4302533.4747869/1‑94 (MQ=60)

                      GAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATG                                                                         <  SRR4302533.720291/94‑1 (MQ=60)

                       AAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGG                                                                        >  SRR4302533.5630834/1‑94 (MQ=60)

                        AATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGC                                                                       >  SRR4302533.5428092/1‑94 (MQ=60)

                         ATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCG                                                                      >  SRR4302533.808298/1‑94 (MQ=60)

                         AGTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCG                                                                      <  SRR4302533.1341963/94‑1 (MQ=60)

                           TAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCA                                                                    <  SRR4302533.350794/94‑1 (MQ=60)

                           TAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCA                                                                    >  SRR4302533.3174077/1‑94 (MQ=60)

                               GCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCT                                                                >  SRR4302533.4496669/1‑94 (MQ=60)

                               GCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCT                                                                >  SRR4302533.169748/1‑94 (MQ=60)

                                CTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTG                                                               <  SRR4302533.3928143/94‑1 (MQ=60)

                                CTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTG                                                               >  SRR4302533.1537638/1‑94 (MQ=60)

                                 TTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGA                                                              >  SRR4302533.4547000/1‑94 (MQ=60)

                                   CCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACG                                                            >  SRR4302533.4514838/1‑94 (MQ=60)

                                    CAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGT                                                           >  SRR4302533.5703835/1‑94 (MQ=60)

                                     AGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTG                                                          <  SRR4302533.6304822/94‑1 (MQ=60)

                                     AGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTG                                                          >  SRR4302533.3903881/1‑94 (MQ=60)

                                     AGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTG                                                          >  SRR4302533.2525817/1‑94 (MQ=60)

                                     AGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGACCAATGGCGCAAGCTGACGTG                                                          >  SRR4302533.1183067/1‑94 (MQ=60)

                                      GGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGG                                                         >  SRR4302533.2882444/1‑94 (MQ=60)

                                      GGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGG                                                         <  SRR4302533.4645864/94‑1 (MQ=60)

                                        AACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGAT                                                       <  SRR4302533.3121750/94‑1 (MQ=60)

                                        AACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGAT                                                       <  SRR4302533.3784999/94‑1 (MQ=60)

                                         ACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATA                                                      >  SRR4302533.952895/1‑94 (MQ=60)

                                          CAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAA                                                     <  SRR4302533.5832022/94‑1 (MQ=60)

                                          CAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAA                                                     >  SRR4302533.251537/1‑94 (MQ=60)

                                          CAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGGTTCTGACACATCAGGTCAAAGGCCAATGGCGCAAGCTGACGTGGATAA                                                     >  SRR4302533.2325610/1‑94 (MQ=60)

                                           AGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAA                                                    >  SRR4302533.4435510/1‑94 (MQ=60)

                                           AGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAA                                                    >  SRR4302533.1682692/1‑94 (MQ=60)

                                           AGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAA                                                    <  SRR4302533.4539679/94‑1 (MQ=60)

                                            GATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAAC                                                   <  SRR4302533.1948434/94‑1 (MQ=60)

                                            GATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAAC                                                   >  SRR4302533.5140598/1‑94 (MQ=60)

                                             ATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACG                                                  >  SRR4302533.5874874/1‑94 (MQ=60)

                                             ATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACG                                                  <  SRR4302533.5344737/94‑1 (MQ=60)

                                               AGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCC                                                >  SRR4302533.3350195/1‑94 (MQ=60)

                                               AGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTAACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCC                                                <  SRR4302533.372496/94‑1 (MQ=60)

                                                GGGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCG                                               <  SRR4302533.4373050/94‑1 (MQ=60)

                                                 CGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGT                                              >  SRR4302533.4675026/1‑94 (MQ=60)

                                                 CGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGT                                              >  SRR4302533.5155870/1‑94 (MQ=60)

                                                 CGGTCGTCATCGCGACGGCTACGGTCGCCACGCCTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGT                                              >  SRR4302533.4347440/1‑94 (MQ=60)

                                                  GGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTC                                             >  SRR4302533.1053299/1‑94 (MQ=60)

                                                  GGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTC                                             >  SRR4302533.3803101/1‑94 (MQ=60)

                                                   GTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCG                                            >  SRR4302533.1728785/1‑94 (MQ=60)

                                                      GTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTC                                         >  SRR4302533.1313567/1‑94 (MQ=60)

                                                      GTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTC                                         >  SRR4302533.5279004/1‑94 (MQ=60)

                                                      GTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTC                                         >  SRR4302533.4024953/1‑94 (MQ=60)

                                                        CATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCAT                                       <  SRR4302533.2571465/94‑1 (MQ=60)

                                                        CATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCAT                                       <  SRR4302533.5521413/94‑1 (MQ=60)

                                                         ATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATT                                      >  SRR4302533.5602167/1‑94 (MQ=60)

                                                         ATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATT                                      >  SRR4302533.2092078/1‑94 (MQ=60)

                                                          TCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTC                                     <  SRR4302533.5177783/94‑1 (MQ=60)

                                                           CGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCC                                    >  SRR4302533.6266402/1‑94 (MQ=60)

                                                            GCGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCC                                   >  SRR4302533.4590957/1‑94 (MQ=60)

                                                             CGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCA                                  >  SRR4302533.3713650/1‑94 (MQ=60)

                                                             CGACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCA                                  >  SRR4302533.2597402/1‑94 (MQ=60)

                                                              GACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATACACGCCGTCGTTCATTCCCAG                                 >  SRR4302533.3131162/1‑94 (MQ=60)

                                                              GACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAG                                 <  SRR4302533.6090578/94‑1 (MQ=60)

                                                               ACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGC                                >  SRR4302533.737861/1‑94 (MQ=60)

                                                               ACGGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGC                                >  SRR4302533.6066597/1‑94 (MQ=60)

                                                                 GGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAG                              >  SRR4302533.1465632/1‑94 (MQ=60)

                                                                 GGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAG                              <  SRR4302533.1703959/94‑1 (MQ=60)

                                                                 GGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAG                              <  SRR4302533.4641797/94‑1 (MQ=60)

                                                                 GGCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAG                              >  SRR4302533.4663541/1‑94 (MQ=60)

                                                                  GCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGG                             <  SRR4302533.4937483/94‑1 (MQ=60)

                                                                  GCTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGG                             <  SRR4302533.6141653/94‑1 (MQ=60)

                                                                   CTACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGC                            >  SRR4302533.3994713/1‑94 (MQ=60)

                                                                    TACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCA                           >  SRR4302533.2163740/1‑94 (MQ=60)

                                                                     ACGGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAA                          >  SRR4302533.4076833/1‑94 (MQ=60)

                                                                       GGTCGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAAC                        <  SRR4302533.4390374/94‑1 (MQ=60)

                                                                          CGCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCAC                     >  SRR4302533.691213/1‑94 (MQ=60)

                                                                           GCCACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACT                    >  SRR4302533.3315151/1‑94 (MQ=60)

                                                                             CACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTT                  >  SRR4302533.1353059/1‑94 (MQ=60)

                                                                             CACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTT                  >  SRR4302533.3964792/1‑94 (MQ=60)

                                                                             CACGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTT                  >  SRR4302533.408264/1‑94 (MQ=60)

                                                                               CGCTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGA                >  SRR4302533.5074891/1‑94 (MQ=60)

                                                                                 CTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAAC              >  SRR4302533.4665899/1‑94 (MQ=60)

                                                                                 CTTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAAC              <  SRR4302533.4620457/94‑1 (MQ=60)

                                                                                 CTNCGGTTTCTGACTCATCAGGNCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAAC              <  SRR4302533.4928979/94‑1 (MQ=60)

                                                                                  TTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAACG             <  SRR4302533.2139499/94‑1 (MQ=60)

                                                                                  TTCGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAACG             >  SRR4302533.1553661/1‑94 (MQ=60)

                                                                                    CGGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAACGGA           >  SRR4302533.5168389/1‑94 (MQ=60)

                                                                                     GGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAACGGAA          >  SRR4302533.1289128/1‑94 (MQ=60)

                                                                                     GGTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAACGGAA          >  SRR4302533.2505532/1‑94 (MQ=60)

                                                                                      GTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAATCGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAACGGAAT         <  SRR4302533.3404011/94‑1 (MQ=60)

                                                                                      GTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAACGGAAT         <  SRR4302533.1636665/94‑1 (MQ=60)

                                                                                      GTTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAACGGAAT         <  SRR4302533.1747917/94‑1 (MQ=60)

                                                                                       TTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAACGGAATT        >  SRR4302533.1255193/1‑94 (MQ=60)

                                                                                       TTTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAACGGAATT        <  SRR4302533.5283174/94‑1 (MQ=60)

                                                                                       TTGCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGACGTTCATTCCCAGCAGGCAAACCACTTTGAACGGAATT        <  SRR4302533.5670283/94‑1 (MQ=60)

                                                                                        TTCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTAGTTCATTCCCAGCAGGCAAACCACTTTGAACGGAATTG       >  SRR4302533.3062095/1‑94 (MQ=60)

                                                                                         TCTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAACGGAATTGA      >  SRR4302533.1141955/1‑94 (MQ=60)

                                                                                          CTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAACGGAATTGAA     >  SRR4302533.5959941/1‑94 (MQ=60)

                                                                                          CTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAACGGAATTGAA     >  SRR4302533.4145014/1‑94 (MQ=60)

                                                                                          CTGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAACGGAATTGAA     <  SRR4302533.3913763/94‑1 (MQ=60)

                                                                                           TGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAACGGAATTGAAC    <  SRR4302533.2915014/94‑1 (MQ=60)

                                                                                           TGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAACGGAATTGAAC    <  SRR4302533.1825632/94‑1 (MQ=60)

                                                                                           TGACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAACGGAATTGAAC    <  SRR4302533.1951223/94‑1 (MQ=60)

                                                                                            GACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAACGGAATTGAACG   >  SRR4302533.3506007/1‑94 (MQ=60)

                                                                                             ACTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAACGGAATTGAACGC  >  SRR4302533.5692162/1‑94 (MQ=60)

GATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGGCTCATCAGGTCAAAGCCCAATGGCGCAAGCTGACGTGGATAAACGCCGTCGTTCATTCCCAGCAGGCAAACCACTTTGAACGGAATTGAACGC  >  NC_000913/2958264‑2958450

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`