Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,971,616 |
A→G |
L90P (CTG→CCG) |
ygeD ← |
putative resistance protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,971,616 | 0 | A | G | 100.0%
| 716.9
/ NA
| 225 | L90P (CTG→CCG) | ygeD | putative resistance protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (124/101); total (124/101) |
Only 100 of 244 total aligned reads displayed.
TCGCCGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCAGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTAAGCA > NC_000913/2971527‑2971705
|
tCGCCGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCt > 1:1103250/1‑93 (MQ=255)
tCGCCGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCt < 2:2549038/93‑1 (MQ=255)
gCCGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTc > 1:6147294/1‑93 (MQ=255)
gCCGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTc > 2:2313661/1‑93 (MQ=255)
ccGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCa < 2:5443120/93‑1 (MQ=255)
cGGTGAATAGGCTGCAGCACGAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAg > 2:3586823/1‑93 (MQ=255)
cGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAg < 1:1305819/93‑1 (MQ=255)
cGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAg < 2:3557453/93‑1 (MQ=255)
cGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAg < 1:4056270/93‑1 (MQ=255)
cGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAg > 2:487571/1‑93 (MQ=255)
ggTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAgg > 1:1087587/1‑93 (MQ=255)
gTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGc < 2:5625645/93‑1 (MQ=255)
gTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCACGc > 2:5708888/1‑93 (MQ=255)
tGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGcc > 2:4544524/1‑93 (MQ=255)
aaTAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGt < 1:3733400/93‑1 (MQ=255)
aaTAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGt > 1:3511359/1‑93 (MQ=255)
aTAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGtt > 1:5715414/1‑93 (MQ=255)
tAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTg > 2:2749414/1‑93 (MQ=255)
ggCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGc > 2:1678050/1‑93 (MQ=255)
ggCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGc > 2:688758/1‑93 (MQ=255)
gCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCa > 2:1661410/1‑93 (MQ=255)
gcagcaCCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCGAAc > 1:3066803/1‑93 (MQ=255)
gcagcaCCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAAc > 2:3968009/1‑93 (MQ=255)
agcaCCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAAcat > 2:5672/1‑93 (MQ=255)
gcaCCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAAcctc > 2:1797374/1‑93 (MQ=255)
gcaCCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAAcatc > 1:1369686/1‑93 (MQ=255)
gcaCCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAAcatc < 2:5843970/93‑1 (MQ=255)
ccAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACatcatc < 1:3357158/93‑1 (MQ=255)
cAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACAtcatca < 2:52849/93‑1 (MQ=255)
aaCACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCAc < 1:5546708/93‑1 (MQ=255)
acacCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCAcc > 2:6255066/1‑93 (MQ=255)
acacCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCAcc > 2:3889920/1‑93 (MQ=255)
acacCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCAcc > 2:2383494/1‑93 (MQ=255)
acacCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCAcc > 2:2082496/1‑93 (MQ=255)
cacccaccAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCAccc < 1:3852104/93‑1 (MQ=255)
ccaccaGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGc < 1:4694675/93‑1 (MQ=255)
caccaGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTTGCAAACATCATCACCCGGct > 2:1861920/1‑92 (MQ=255)
caccaGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGcc < 1:2177877/93‑1 (MQ=255)
accaGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCt > 2:4339066/1‑93 (MQ=255)
ccaGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCCGCCtt > 2:31452/1‑93 (MQ=255)
caGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCttt < 2:369441/93‑1 (MQ=255)
caGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCttt > 2:2416406/1‑93 (MQ=255)
aGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTg > 1:4829495/1‑93 (MQ=255)
gCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTgg < 2:5370488/93‑1 (MQ=255)
gCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTgg > 2:884458/1‑93 (MQ=255)
gTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCTAGCGGCTTCTGGCCGTTGGCAAAAATCATCAACCGGCCTTTGGCg > 2:2850210/1‑93 (MQ=255)
gTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCg > 2:5026758/1‑93 (MQ=255)
tataGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGa > 1:5275750/1‑93 (MQ=255)
ataGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGaa < 2:5500977/93‑1 (MQ=255)
aGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGc > 2:4051590/1‑93 (MQ=255)
aGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGc < 1:2607497/93‑1 (MQ=255)
gCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCt > 1:6246043/1‑93 (MQ=255)
gCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCt < 2:4763211/93‑1 (MQ=255)
ccGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTa < 1:1875716/93‑1 (MQ=255)
cGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTAt < 2:1555987/93‑1 (MQ=255)
gagaAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATc > 1:4737700/1‑93 (MQ=255)
gagaAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATc > 2:4588347/1‑93 (MQ=255)
aaCGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGcc > 2:1390285/1‑93 (MQ=255)
aCGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCa > 2:4461411/1‑93 (MQ=255)
ggATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCAcc > 2:5156398/1‑93 (MQ=255)
ggATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCAcc < 1:5820342/93‑1 (MQ=255)
ggATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCAcc > 2:2955623/1‑93 (MQ=255)
gATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCTTTTGGCGAAGCTATCCGCCACCt < 1:1179700/93‑1 (MQ=255)
gATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCt < 1:318288/93‑1 (MQ=255)
gATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCt > 2:1784603/1‑93 (MQ=255)
gATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCt > 1:3454880/1‑93 (MQ=255)
ttGATACGAAATCAGATACTGGCTGCGCCCACCGGCTCCAGGCCGTTGCCAAACATCATCACCCGGCCTTTGGCGAAGCTACCCGCCACCTGc < 2:1460133/93‑1 (MQ=255)
ttGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGc > 2:3263704/1‑93 (MQ=255)
ttGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGc > 2:2003284/1‑93 (MQ=255)
tGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGcc > 1:5975192/1‑93 (MQ=255)
tGATACCAAAGCAGAGACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGcc < 2:3812623/93‑1 (MQ=255)
aTACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCg < 1:3994574/93‑1 (MQ=255)
tACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGa > 1:2108129/1‑93 (MQ=255)
cAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACaa < 1:1661410/93‑1 (MQ=255)
aaaGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACaaa < 1:2310131/93‑1 (MQ=255)
aaaGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACaaa < 1:2754804/93‑1 (MQ=255)
aaGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAAc < 1:4495955/93‑1 (MQ=255)
aaGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAAc > 2:2147476/1‑93 (MQ=255)
aaGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAAc < 2:2631298/93‑1 (MQ=255)
aGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACg < 2:3093100/93‑1 (MQ=255)
gCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACgg > 1:4613814/1‑93 (MQ=255)
cAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGTCAAACGgc < 2:6147496/93‑1 (MQ=255)
cAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGgc > 2:1834045/1‑93 (MQ=255)
cAGATACTGGCTGCGCCCAGAGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGgc < 1:4339332/93‑1 (MQ=255)
aGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGgcg < 1:5247431/93‑1 (MQ=255)
gATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGgcgc < 2:4965789/93‑1 (MQ=255)
aTACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCa > 2:5906949/1‑93 (MQ=255)
tACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCaa > 2:288373/1‑93 (MQ=255)
tGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCaaaaa < 2:2187815/93‑1 (MQ=255)
ggCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTTGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGcaacaaa > 1:792435/1‑92 (MQ=255)
ggCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAg < 1:5430314/93‑1 (MQ=255)
cTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGaa < 1:41642/93‑1 (MQ=255)
tGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAAt < 1:3659356/93‑1 (MQ=255)
tGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAAt < 1:1910292/93‑1 (MQ=255)
gcgcCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATg > 2:413222/1‑93 (MQ=255)
cagcggCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTAAGc > 1:1700443/1‑93 (MQ=255)
cagcggCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTAAGc < 1:487571/93‑1 (MQ=255)
cagcggCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTAAGc < 1:4191107/93‑1 (MQ=255)
cagcggCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTAAGc < 1:2679891/93‑1 (MQ=255)
agcggcTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTAAGCa < 1:2413760/93‑1 (MQ=255)
|
TCGCCGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCAGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTAAGCA > NC_000913/2971527‑2971705
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TATTTCGCCGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCAGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA‑AAAGAATGTAAGCACCTA > NC_000913/2971523‑2971709
|
TATTTCGCCGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCG < SRR4302533.260844/94‑1 (MQ=60)
TATTTCGCCGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCG < SRR4302533.3124524/94‑1 (MQ=60)
TTCGCCGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCT > SRR4302533.1109781/1‑94 (MQ=60)
TTCGCCGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGACGAGAAACGGATTGATACCAAAGCAGATACTCGCTGCGCCCAGCCGCT > SRR4302533.1993657/1‑94 (MQ=60)
CGCCGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTC > SRR4302533.3926308/1‑94 (MQ=60)
CGCCGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTC > SRR4302533.6184303/1‑94 (MQ=60)
CCGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAG < SRR4302533.1235858/94‑1 (MQ=60)
CGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGG > SRR4302533.1093994/1‑94 (MQ=60)
CGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGG > SRR4302533.3807782/1‑94 (MQ=60)
CGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGG < SRR4302533.4080963/94‑1 (MQ=60)
CGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGG < SRR4302533.1774253/94‑1 (MQ=60)
CGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGG < SRR4302533.1313664/94‑1 (MQ=60)
CGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGG > SRR4302533.693762/1‑94 (MQ=60)
GTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCC > SRR4302533.2395720/1‑94 (MQ=60)
GTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCC > SRR4302533.3709531/1‑94 (MQ=60)
GAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGT > SRR4302533.3533003/1‑94 (MQ=60)
AATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTT > SRR4302533.5749936/1‑94 (MQ=60)
AATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTT < SRR4302533.1144055/94‑1 (MQ=60)
AATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTT < SRR4302533.3756302/94‑1 (MQ=60)
ATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTG < SRR4302533.2595767/94‑1 (MQ=60)
TAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGGTGG > SRR4302533.5707963/1‑94 (MQ=60)
AGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGC < SRR4302533.5341146/94‑1 (MQ=60)
AGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGC > SRR4302533.5385673/1‑94 (MQ=60)
GGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGGCGTTGGCA > SRR4302533.1200217/1‑94 (MQ=60)
GGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCA > SRR4302533.2407918/1‑94 (MQ=60)
TGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCGAAC > SRR4302533.3085640/1‑94 (MQ=60)
GCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACA > SRR4302533.4744549/1‑94 (MQ=60)
CAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACAT < SRR4302533.3126883/94‑1 (MQ=60)
CAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACAT < SRR4302533.5986026/94‑1 (MQ=60)
AGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATC > SRR4302533.4065393/1‑94 (MQ=60)
AGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATC > SRR4302533.1377918/1‑94 (MQ=60)
GCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGGTGGCAAACATCA > SRR4302533.2663328/1‑94 (MQ=60)
CACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCAT < SRR4302533.1100787/94‑1 (MQ=60)
ACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATC > SRR4302533.4029154/1‑94 (MQ=60)
CCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCA < SRR4302533.3377903/94‑1 (MQ=60)
AACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACC < SRR4302533.472534/94‑1 (MQ=60)
AACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACC < SRR4302533.5580207/94‑1 (MQ=60)
ACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCC > SRR4302533.1596820/1‑94 (MQ=60)
CACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCG < SRR4302533.3875627/94‑1 (MQ=60)
CACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCG > SRR4302533.4822093/1‑94 (MQ=60)
ACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGG < SRR4302533.2624453/94‑1 (MQ=60)
CCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCC < SRR4302533.4723123/94‑1 (MQ=60)
CACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCT < SRR4302533.2191304/94‑1 (MQ=60)
ACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGGTGGCAAACATCATCACCCCGGCTT > SRR4302533.5639391/1‑94 (MQ=60)
CAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTG > SRR4302533.1813832/1‑94 (MQ=60)
CAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTG > SRR4302533.4858763/1‑94 (MQ=60)
CAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTG > SRR4302533.716824/1‑94 (MQ=60)
CAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTG > SRR4302533.2185847/1‑94 (MQ=60)
AGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGG < SRR4302533.1689950/94‑1 (MQ=60)
AGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGG < SRR4302533.5855381/94‑1 (MQ=60)
CGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCG > SRR4302533.1320555/1‑94 (MQ=60)
GTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGA > SRR4302533.5307381/1‑94 (MQ=60)
TATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAA > SRR4302533.3416923/1‑94 (MQ=60)
AGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCT < SRR4302533.5127455/94‑1 (MQ=60)
AGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCT > SRR4302533.6283426/1‑94 (MQ=60)
AGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCT < SRR4302533.2623511/94‑1 (MQ=60)
CCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTAT < SRR4302533.1887147/94‑1 (MQ=60)
CGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATC > SRR4302533.2206898/1‑94 (MQ=60)
CGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATC > SRR4302533.4766427/1‑94 (MQ=60)
AGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATGCG > SRR4302533.3492761/1‑94 (MQ=60)
GAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGC > SRR4302533.409859/1‑94 (MQ=60)
ACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCAC < SRR4302533.1510054/94‑1 (MQ=60)
CGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACC > SRR4302533.6055466/1‑94 (MQ=60)
GGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCT > SRR4302533.3476205/1‑94 (MQ=60)
GGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCT < SRR4302533.4573989/94‑1 (MQ=60)
GGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCT < SRR4302533.5855501/94‑1 (MQ=60)
GATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCTTTTGGCGAAGCTATCCGCCACCTG < SRR4302533.1186788/94‑1 (MQ=60)
GATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTG > SRR4302533.5188075/1‑94 (MQ=60)
GATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTG < SRR4302533.320238/94‑1 (MQ=60)
GATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTG < SRR4302533.4337667/94‑1 (MQ=60)
GATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCGTTGGCGAAACTATCCGCCACCTC > SRR4302533.2766259/1‑94 (MQ=60)
TTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCC > SRR4302533.6011363/1‑94 (MQ=60)
TGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGACGCTATCCGCCACCTGCCC > SRR4302533.1904995/1‑94 (MQ=60)
TGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCC < SRR4302533.3611601/94‑1 (MQ=60)
ATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGA > SRR4302533.2121132/1‑94 (MQ=60)
ATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGA < SRR4302533.4018895/94‑1 (MQ=60)
TACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGAC > SRR4302533.344897/1‑94 (MQ=60)
CAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAA < SRR4302533.1671455/94‑1 (MQ=60)
AAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCCAACATCATCACCCGGCCTTTGGCGAAGCTATCTGCCCCCTGCCCCACACAC > SRR4302533.2190824/1‑94 (MQ=60)
AAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAAC < SRR4302533.2324442/94‑1 (MQ=60)
AAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAAC < SRR4302533.2771698/94‑1 (MQ=60)
AAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACG < SRR4302533.4523180/94‑1 (MQ=60)
AGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGG > SRR4302533.3857040/1‑94 (MQ=60)
AGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGG > SRR4302533.4643029/1‑94 (MQ=60)
AGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGG > SRR4302533.4641762/1‑94 (MQ=60)
AGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGG > SRR4302533.4575217/1‑94 (MQ=60)
GCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGC < SRR4302533.6218009/94‑1 (MQ=60)
CAGATCCTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCACCCCCCGGCTTTTGGCAAAGCTACCCCCCCCCTGCCCGACAAACGGCG < SRR4302533.4645035/94‑1 (MQ=53)
CAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCG < SRR4302533.4413417/94‑1 (MQ=60)
CAGATACTGGCTGCGCCCAGAGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCG < SRR4302533.4365486/94‑1 (MQ=60)
AGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGC < SRR4302533.5278979/94‑1 (MQ=60)
AGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGC > SRR4302533.3268537/1‑94 (MQ=60)
CTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA‑AAA > SRR4302533.5976428/1‑94 (MQ=60)
TGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTTGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAACAAA > SRR4302533.797099/1‑94 (MQ=60)
GGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA‑AAAGA < SRR4302533.5463019/94‑1 (MQ=60)
GCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA‑AAAGAA < SRR4302533.4859445/94‑1 (MQ=60)
GCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA‑AAAGAA > SRR4302533.2931229/1‑94 (MQ=60)
CTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA‑AAAGAAT < SRR4302533.41925/94‑1 (MQ=60)
TGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA‑AAAGAATG > SRR4302533.5303790/1‑94 (MQ=60)
TGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA‑AAAGAATG < SRR4302533.1921946/94‑1 (MQ=60)
TGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA‑AAAGAATG < SRR4302533.3681854/94‑1 (MQ=60)
TGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA‑AAAGAATG > SRR4302533.3052740/1‑94 (MQ=60)
CGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA‑AAAGAATGTA < SRR4302533.5488576/94‑1 (MQ=60)
CCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA‑AAAGAATGTAAGC > SRR4302533.4200036/1‑94 (MQ=60)
CCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA‑AAAGAATGTAAGC > SRR4302533.366805/1‑94 (MQ=60)
CCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA‑AAAGAATGTAAGC > SRR4302533.1710750/1‑94 (MQ=60)
CAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA‑AAAGAATGTAAGCA < SRR4302533.490487/94‑1 (MQ=60)
CAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA‑AAAGAATGTAAGCA < SRR4302533.2696316/94‑1 (MQ=60)
CAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA‑AAAGAATGTAAGCA < SRR4302533.4360100/94‑1 (MQ=60)
CAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA‑AAAGAATGTAAGCA < SRR4302533.4216474/94‑1 (MQ=60)
AGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA‑AAAGAATGTAAGCAC < SRR4302533.2428672/94‑1 (MQ=60)
CGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA‑AAAGAATGTAAGCACCT < SRR4302533.351050/94‑1 (MQ=60)
CGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA‑AAAGAATGTAAGCACCT > SRR4302533.2223368/1‑94 (MQ=60)
CGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA‑AAAGAATGTAAGCACCT > SRR4302533.5608930/1‑94 (MQ=60)
GGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA‑AAAGAATGTAAGCACCTA > SRR4302533.6059824/1‑94 (MQ=60)
GGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA‑AAAGAATGTAAGCACCTA < SRR4302533.3992179/94‑1 (MQ=60)
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TATTTCGCCGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCAGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA‑AAAGAATGTAAGCACCTA > NC_000913/2971523‑2971709
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
