Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,975,807	A→G	L372P (CTG→CCG)	lysA ←	diaminopimelate decarboxylase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,975,807	0	A	G	100.0%	1049.4 / NA	321	L372P (CTG→CCG)	lysA	diaminopimelate decarboxylase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (171/150); total (171/150)

Only 100 of 325 total aligned reads displayed.

GCCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCA  >  NC_000913/2975717‑2975896

gcCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGt                                                                                         <  1:698579/93‑1 (MQ=255)

gcCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGt                                                                                         <  1:563346/93‑1 (MQ=255)

gcCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGt                                                                                         >  2:8895714/1‑93 (MQ=255)

 ccTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTa                                                                                        >  1:950745/1‑93 (MQ=255)

 ccTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTa                                                                                        <  1:5558466/93‑1 (MQ=255)

  cTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTAc                                                                                       >  1:9418049/1‑93 (MQ=255)

   tGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTAcc                                                                                      <  1:8694921/93‑1 (MQ=255)

    gACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCa                                                                                     >  2:2795091/1‑93 (MQ=255)

     aCCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAg                                                                                    <  1:7445570/93‑1 (MQ=255)

     aCCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAg                                                                                    >  2:4647856/1‑93 (MQ=255)

      ccATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGa                                                                                   <  1:4183551/93‑1 (MQ=255)

        aTTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATa                                                                                 <  2:7271443/93‑1 (MQ=255)

        aTTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATa                                                                                 >  2:489873/1‑93 (MQ=255)

         ttATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATaa                                                                                <  1:4253423/93‑1 (MQ=255)

         ttATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATaa                                                                                >  2:2915335/1‑93 (MQ=255)

         ttATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATaa                                                                                >  2:8361834/1‑93 (MQ=255)

         ttATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATaa                                                                                >  1:1377557/1‑93 (MQ=255)

          tATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAAt                                                                               <  1:7856329/93‑1 (MQ=255)

           aTCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATc                                                                              <  2:8499040/93‑1 (MQ=255)

           aTCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATc                                                                              >  2:9102736/1‑93 (MQ=255)

              aaaCAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCAcc                                                                           >  1:10003530/1‑93 (MQ=255)

              aaaCAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCAcc                                                                           >  2:9666206/1‑93 (MQ=255)

               aaCAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCATATAATCACCt                                                                          >  1:9731797/1‑93 (MQ=255)

               aaCAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCt                                                                          >  2:21215/1‑93 (MQ=255)

               aaCAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCt                                                                          <  1:8506737/93‑1 (MQ=255)

                aCAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTg                                                                         >  1:4391783/1‑93 (MQ=255)

                aCAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTg                                                                         >  2:6972049/1‑93 (MQ=255)

                 cAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGc                                                                        >  2:5748491/1‑93 (MQ=255)

                  aGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAGTCACCTGcc                                                                       <  2:4151763/93‑1 (MQ=255)

                  aGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGcc                                                                       <  1:3846260/93‑1 (MQ=255)

                  aGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGcc                                                                       >  2:6034777/1‑93 (MQ=255)

                   gAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCt                                                                      <  1:6525854/93‑1 (MQ=255)

                    aaCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCtt                                                                     <  1:1180160/93‑1 (MQ=255)

                     aCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTc                                                                    <  2:4359909/93‑1 (MQ=255)

                     aCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTc                                                                    <  1:9189471/93‑1 (MQ=255)

                      cTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCa                                                                   >  1:602873/1‑93 (MQ=255)

                       ttCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCAc                                                                  >  2:1648722/1‑93 (MQ=255)

                        tCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACt                                                                 >  1:3295512/1‑93 (MQ=255)

                         cTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACtt                                                                <  1:838977/93‑1 (MQ=255)

                          tGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTc                                                               >  2:1528041/1‑93 (MQ=255)

                          tGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTc                                                               <  1:2334749/93‑1 (MQ=255)

                           ggTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTcc                                                              <  1:6795592/93‑1 (MQ=255)

                            gTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCg                                                             >  1:7775391/1‑93 (MQ=255)

                             tAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCgg                                                            >  2:9586151/1‑93 (MQ=255)

                              aaCAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGc                                                           <  2:7449311/93‑1 (MQ=255)

                               aCAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCa                                                          >  2:2492878/1‑93 (MQ=255)

                                cAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCaa                                                         <  1:2229768/93‑1 (MQ=255)

                                cAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCaa                                                         <  2:9259105/93‑1 (MQ=255)

                                 aGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAg                                                        <  2:5166475/93‑1 (MQ=255)

                                  gCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAgg                                                       <  1:2191600/93‑1 (MQ=255)

                                  gCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAgg                                                       >  2:3275473/1‑93 (MQ=255)

                                   cGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGgc                                                      <  1:3700232/93‑1 (MQ=255)

                                    ggACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGgcg                                                     >  1:686419/1‑93 (MQ=255)

                                     gACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGgcgc                                                    <  2:773030/93‑1 (MQ=255)

                                          cTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTTCCTTCACTTCCGGCAAGGCGCGGGtt                                               <  1:9824686/93‑1 (MQ=255)

                                           tATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGttt                                              <  2:802795/93‑1 (MQ=255)

                                            aTTGTAGTTGGATGACATTGATGCGCCATGTGCCCCTGTATCATGCGGTACCAGATAACCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTc                                             <  1:2710291/93‑1 (MQ=255)

                                            aTTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTc                                             >  2:7980281/1‑93 (MQ=255)

                                            aTTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTc                                             >  2:2330135/1‑93 (MQ=255)

                                            aTTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTc                                             >  1:7613801/1‑93 (MQ=255)

                                             ttGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCa                                            >  2:2197957/1‑93 (MQ=255)

                                                tAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACa                                         >  2:1018852/1‑93 (MQ=255)

                                                 aGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACAt                                        >  1:6241669/1‑93 (MQ=255)

                                                  gTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACAtt                                       >  2:4233575/1‑93 (MQ=255)

                                                  gTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACAtt                                       >  2:3109592/1‑93 (MQ=255)

                                                   ttGGATGGCATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACATGCCTTCACTTCCGGCAAGGCGCGGGTGTCACCAttt                                      >  1:2055440/1‑93 (MQ=255)

                                                   ttGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACAttt                                      <  1:3154604/93‑1 (MQ=255)

                                                     ggATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTcc                                    >  2:135492/1‑93 (MQ=255)

                                                      gATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTccc                                   >  1:5002749/1‑93 (MQ=255)

                                                      gATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTccc                                   >  1:6664630/1‑93 (MQ=255)

                                                       aTGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTcccc                                  <  1:2674227/93‑1 (MQ=255)

                                                        tGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCCCCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTccccc                                 <  2:3936611/93‑1 (MQ=255)

                                                        tGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTccccc                                 <  1:9064802/93‑1 (MQ=255)

                                                         gACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCt                                <  1:5576397/93‑1 (MQ=255)

                                                         gACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCt                                <  2:2502296/93‑1 (MQ=255)

                                                          aCATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCtt                               >  1:2396725/1‑93 (MQ=255)

                                                            aTTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCCCCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTcc                             <  1:5856972/93‑1 (MQ=255)

                                                                aTGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCctgct                         >  2:5452485/1‑93 (MQ=255)

                                                                 tGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCctgctg                        >  2:8691972/1‑93 (MQ=255)

                                                                  gcgcCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTgg                       <  1:2109957/93‑1 (MQ=255)

                                                                     ccATCTGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGGTTCAACATTTCGCCCTTCCTGCTGGGTa                    >  1:805588/1‑93 (MQ=255)

                                                                     ccATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTa                    >  1:4804799/1‑93 (MQ=255)

                                                                     ccATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTa                    >  1:4825424/1‑93 (MQ=255)

                                                                      cATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTaa                   >  2:6215523/1‑93 (MQ=255)

                                                                       atatGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTaaa                  >  1:1779393/1‑93 (MQ=255)

                                                                        tatGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAg                 <  2:4927428/93‑1 (MQ=255)

                                                                        tatGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAg                 >  2:7911220/1‑93 (MQ=255)

                                                                         atGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGa                >  1:6583021/1‑93 (MQ=255)

                                                                           gCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACa              >  2:2830234/1‑93 (MQ=255)

                                                                             cccTGTATCATGCGGTAACAGATAATCACCTGCCTACACTTCCAGCAAGGCGCGGAATACAACATTTCCCCCATCCTGCTGGGTAAAGACATc            <  1:8948825/93‑1 (MQ=255)

                                                                                 gTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGccc        >  2:3064837/1‑93 (MQ=255)

                                                                                 gTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGccc        >  1:397215/1‑93 (MQ=255)

                                                                                 gTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGccc        >  2:9446289/1‑93 (MQ=255)

                                                                                   aTCATGCGGTACCAGATAAACACCTGCCTTCCCTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGa      <  1:305471/93‑1 (MQ=255)

                                                                                    tCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCGACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGAt     >  2:5638541/1‑93 (MQ=255)

                                                                                    tCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGAt     <  1:8829832/93‑1 (MQ=255)

                                                                                      aTGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCTCCCTTCCTGCTGGGTAAAGACATCGCCCGATTc   >  1:5243052/1‑93 (MQ=255)

                                                                                      aTGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTT‑CTCCTTACTTGTGGGGAAAGACAACGCCCGAtttc  >  1:3269823/1‑91 (MQ=255)

                                                                                       tGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTca  >  2:3481937/1‑93 (MQ=255)

                                                                                       tGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTca  >  1:6442767/1‑93 (MQ=255)

GCCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCA  >  NC_000913/2975717‑2975896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCGCCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATA  >  NC_000913/2975714‑2975900

CGCGCCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCG                                                                                               <  SRR4302540.8014147/94‑1 (MQ=60)

CGCGCCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCG                                                                                               <  SRR4302540.7906792/94‑1 (MQ=60)

 GCGCCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGG                                                                                              >  SRR4302540.1094699/1‑94 (MQ=60)

  CGCCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGT                                                                                             <  SRR4302540.317303/94‑1 (MQ=60)

  CGCCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGT                                                                                             <  SRR4302540.8082836/94‑1 (MQ=60)

  CGCCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGT                                                                                             >  SRR4302540.1809750/1‑94 (MQ=60)

   GCCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTA                                                                                            <  SRR4302540.3892855/94‑1 (MQ=60)

   GCCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTA                                                                                            <  SRR4302540.706074/94‑1 (MQ=60)

   GCCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTA                                                                                            <  SRR4302540.569474/94‑1 (MQ=60)

   GCCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTA                                                                                            >  SRR4302540.960627/1‑94 (MQ=60)

    CCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTAC                                                                                           <  SRR4302540.8915888/94‑1 (MQ=60)

    CCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTAC                                                                                           >  SRR4302540.9529997/1‑94 (MQ=60)

    CCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTAC                                                                                           <  SRR4302540.5619686/94‑1 (MQ=60)

     CTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACC                                                                                          >  SRR4302540.8993060/1‑94 (MQ=60)

     CTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACC                                                                                          >  SRR4302540.9301677/1‑94 (MQ=60)

     CTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACC                                                                                          >  SRR4302540.7662223/1‑94 (MQ=60)

      TGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCA                                                                                         <  SRR4302540.8795860/94‑1 (MQ=60)

      TGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCA                                                                                         <  SRR4302540.8795859/94‑1 (MQ=60)

       GACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAG                                                                                        <  SRR4302540.9084096/94‑1 (MQ=60)

       GACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAG                                                                                        <  SRR4302540.3931422/94‑1 (MQ=60)

       GACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAG                                                                                        <  SRR4302540.4286545/94‑1 (MQ=60)

        ACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGA                                                                                       <  SRR4302540.7528529/94‑1 (MQ=60)

        ACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGA                                                                                       <  SRR4302540.7528530/94‑1 (MQ=60)

         CCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGAT                                                                                      >  SRR4302540.4373033/1‑94 (MQ=60)

         CCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGAT                                                                                      <  SRR4302540.4229010/94‑1 (MQ=60)

         CCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGAT                                                                                      <  SRR4302540.8701521/94‑1 (MQ=60)

         ACATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGAT                                                                                      <  SRR4302540.6951094/94‑1 (MQ=60)

          CATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATA                                                                                     >  SRR4302540.9879576/1‑94 (MQ=60)

           ATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAA                                                                                    <  SRR4302540.1894421/94‑1 (MQ=60)

           ATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAA                                                                                    >  SRR4302540.1392214/1‑94 (MQ=60)

            TTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAAT                                                                                   <  SRR4302540.4299697/94‑1 (MQ=60)

            TTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAAT                                                                                   <  SRR4302540.4249304/94‑1 (MQ=60)

            TTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAAT                                                                                   <  SRR4302540.9558180/94‑1 (MQ=60)

             TATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATC                                                                                  <  SRR4302540.7948127/94‑1 (MQ=60)

              ATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCA                                                                                 <  SRR4302540.8561244/94‑1 (MQ=60)

              ATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCA                                                                                 >  SRR4302540.3210215/1‑94 (MQ=60)

               TCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCAC                                                                                <  SRR4302540.3166175/94‑1 (MQ=60)

               TCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCAC                                                                                <  SRR4302540.6534009/94‑1 (MQ=60)

                CAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACC                                                                               >  SRR4302540.10120052/1‑94 (MQ=60)

                CAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACC                                                                               >  SRR4302540.6326092/1‑94 (MQ=60)

                CAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACC                                                                               <  SRR4302540.837971/94‑1 (MQ=60)

                 AAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCATATAATCACCT                                                                              >  SRR4302540.9846069/1‑94 (MQ=60)

                 AAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCT                                                                              <  SRR4302540.4299204/94‑1 (MQ=60)

                 AAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCT                                                                              <  SRR4302540.2385184/94‑1 (MQ=60)

                 AAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCT                                                                              <  SRR4302540.3560082/94‑1 (MQ=60)

                  AACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGTGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTG                                                                             >  SRR4302540.5287777/1‑94 (MQ=60)

                  AACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTG                                                                             <  SRR4302540.9542889/94‑1 (MQ=60)

                  AACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTG                                                                             >  SRR4302540.4439444/1‑94 (MQ=60)

                  AACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTG                                                                             <  SRR4302540.2216386/94‑1 (MQ=60)

                  AACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTG                                                                             <  SRR4302540.8605595/94‑1 (MQ=60)

                   ACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGC                                                                            >  SRR4302540.1369402/1‑94 (MQ=60)

                     AGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCT                                                                          >  SRR4302540.700801/1‑94 (MQ=60)

                     AGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCT                                                                          <  SRR4302540.3888086/94‑1 (MQ=60)

                      GAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTT                                                                         <  SRR4302540.6598330/94‑1 (MQ=60)

                       AACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTC                                                                        <  SRR4302540.1192349/94‑1 (MQ=60)

                        ACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCCCCTGCCTTCA                                                                       >  SRR4302540.8159044/1‑94 (MQ=60)

                        ACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCC                                                                       >  SRR4302540.7758690/1‑94 (MQ=60)

                        ACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCA                                                                       <  SRR4302540.9299673/94‑1 (MQ=60)

                        ACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCA                                                                       >  SRR4302540.609330/1‑94 (MQ=60)

                         CTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCAC                                                                      <  SRR4302540.6639732/94‑1 (MQ=60)

                         CTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGAATCATGCGGTACCAGATAATCACCTGCCTTCAC                                                                      >  SRR4302540.6928324/1‑94 (MQ=60)

                         CTTCTGGTAACAGCGGACGGCTAATGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCAC                                                                      >  SRR4302540.6928323/1‑94 (MQ=60)

                          TTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACT                                                                     >  SRR4302540.6523486/1‑94 (MQ=60)

                          TTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACT                                                                     >  SRR4302540.3331576/1‑94 (MQ=60)

                          TTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCACTGTATCATGCCGTACCAGATAATCACCTTCCTGCACT                                                                     >  SRR4302540.3331574/1‑94 (MQ=60)

                           TCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTT                                                                    >  SRR4302540.4528449/1‑94 (MQ=60)

                           TCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTT                                                                    >  SRR4302540.5635288/1‑94 (MQ=60)

                            CTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTC                                                                   >  SRR4302540.2308259/1‑94 (MQ=60)

                            CTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTC                                                                   <  SRR4302540.847874/94‑1 (MQ=60)

                             TGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCC                                                                  >  SRR4302540.9411482/1‑94 (MQ=60)

                             TGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCC                                                                  <  SRR4302540.2359905/94‑1 (MQ=60)

                             TGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCC                                                                  <  SRR4302540.3838288/94‑1 (MQ=60)

                             TGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCC                                                                  <  SRR4302540.568237/94‑1 (MQ=60)

                              GGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCG                                                                 >  SRR4302540.7866289/1‑94 (MQ=60)

                              GGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCG                                                                 <  SRR4302540.6240091/94‑1 (MQ=60)

                              GGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCG                                                                 <  SRR4302540.6870750/94‑1 (MQ=60)

                                 AACAGCGGACGGCTATTGTAGTTGGATGACATTGATCCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCA                                                              <  SRR4302540.4961447/94‑1 (MQ=60)

                                   CAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAG                                                            <  SRR4302540.2253783/94‑1 (MQ=60)

                                    AGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATCCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGG                                                           >  SRR4302540.6126974/1‑94 (MQ=60)

                                     acggaacGCTATTGTAGTTGGATGACATTCATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCCCCTGCCTTCACTTCCGGCAAGGC                                                          <  SRR4302540.6336136/87‑1 (MQ=60)

                                     GCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGC                                                          <  SRR4302540.2215269/94‑1 (MQ=60)

                                      CGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCG                                                         >  SRR4302540.693787/1‑94 (MQ=60)

                                      CGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCG                                                         <  SRR4302540.3740621/94‑1 (MQ=60)

                                      CGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCG                                                         >  SRR4302540.2895194/1‑94 (MQ=60)

                                       GGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGC                                                        >  SRR4302540.5320075/1‑94 (MQ=60)

                                          CGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGG                                                     <  SRR4302540.7945258/94‑1 (MQ=60)

                                           GGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGT                                                    >  SRR4302540.1338170/1‑94 (MQ=60)

                                           GGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGT                                                    >  SRR4302540.2005589/1‑94 (MQ=60)

                                           GGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGT                                                    >  SRR4302540.665549/1‑94 (MQ=60)

                                            GCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTT                                                   <  SRR4302540.3642840/94‑1 (MQ=60)

                                             CTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTTCCTTCACTTCCGGCAAGGCGCGGGTTT                                                  <  SRR4302540.9939625/94‑1 (MQ=60)

                                             CTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTT                                                  >  SRR4302540.595311/1‑94 (MQ=60)

                                             CTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTT                                                  >  SRR4302540.6800292/1‑94 (MQ=60)

                                              TATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTC                                                 >  SRR4302540.2160529/1‑94 (MQ=60)

                                              TATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTC                                                 >  SRR4302540.7699394/1‑94 (MQ=60)

                                              TATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTC                                                 >  SRR4302540.9574155/1‑94 (MQ=60)

                                               ATTGTAGTTGGATGACATTGATGCGCCATGTGCCCCTGTATCATGCGGTACCAGATAACCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCA                                                <  SRR4302540.2739518/94‑1 (MQ=60)

                                               ATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCA                                                >  SRR4302540.6506737/1‑94 (MQ=60)

                                               ATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCA                                                <  SRR4302540.4059471/94‑1 (MQ=60)

                                               ATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCA                                                >  SRR4302540.2736409/1‑94 (MQ=60)

                                               ATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCA                                                >  SRR4302540.2736410/1‑94 (MQ=60)

                                               ATTGTAGTTGGATGACATTGATGCGCCATATGACACTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCACGGCGCGGGTTTCA                                                >  SRR4302540.9237471/1‑94 (MQ=60)

                                                 TGTGGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAAC                                              <  SRR4302540.5371326/94‑1 (MQ=60)

                                                  GTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACA                                             <  SRR4302540.7913249/94‑1 (MQ=60)

                                                  GTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACA                                             <  SRR4302540.3101392/94‑1 (MQ=60)

                                                   TAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACAT                                            <  SRR4302540.2169303/94‑1 (MQ=60)

                                                   TAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACAT                                            >  SRR4302540.6311132/1‑94 (MQ=60)

                                                   TAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACAT                                            >  SRR4302540.6311134/1‑94 (MQ=60)

                                                    AGTTGGATAACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATT                                           <  SRR4302540.10031703/94‑1 (MQ=60)

                                                     GTTGGATGGCATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACATGCCTTCACTTCCGGCAAGGCGCGGGTGTCACCATTT                                          >  SRR4302540.2077568/1‑94 (MQ=60)

                                                      TTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTC                                         <  SRR4302540.5643568/94‑1 (MQ=60)

                                                      TTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTC                                         <  SRR4302540.3188945/94‑1 (MQ=60)

                                                      TTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTC                                         <  SRR4302540.3188944/94‑1 (MQ=60)

                                                       TGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCC                                        <  SRR4302540.1151846/94‑1 (MQ=60)

                                                       TGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCC                                        <  SRR4302540.5677917/94‑1 (MQ=60)

                                                       TGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCC                                        >  SRR4302540.2372937/1‑94 (MQ=60)

                                                        GGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCC                                       <  SRR4302540.7798088/94‑1 (MQ=60)

                                                        GGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCC                                       >  SRR4302540.5056925/1‑94 (MQ=60)

                                                        GGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCC                                       <  SRR4302540.4877890/94‑1 (MQ=60)

                                                        GGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCC                                       >  SRR4302540.3794796/1‑94 (MQ=60)

                                                        GGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCC                                       >  SRR4302540.6738298/1‑94 (MQ=60)

                                                          ATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCC                                     <  SRR4302540.2703178/94‑1 (MQ=60)

                                                          ATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCC                                     >  SRR4302540.6835777/1‑94 (MQ=60)

                                                           TGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCT                                    <  SRR4302540.9967524/94‑1 (MQ=60)

                                                           TGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCT                                    <  SRR4302540.9173642/94‑1 (MQ=60)

                                                           TGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCT                                    >  SRR4302540.2251982/1‑94 (MQ=60)

                                                            GACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTT                                   >  SRR4302540.3522259/1‑94 (MQ=60)

                                                            GACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTT                                   >  SRR4302540.2422554/1‑94 (MQ=60)

                                                            GACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTT                                   <  SRR4302540.5637790/94‑1 (MQ=60)

                                                             ACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTC                                  <  SRR4302540.8289570/94‑1 (MQ=60)

                                                              CATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCC                                 >  SRR4302540.2556618/1‑94 (MQ=60)

                                                               ATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCCCCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCT                                <  SRR4302540.5921748/94‑1 (MQ=60)

                                                               ATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCT                                <  SRR4302540.5001625/94‑1 (MQ=60)

                                                               ATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCT                                >  SRR4302540.6817477/1‑94 (MQ=60)

                                                               ATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCT                                <  SRR4302540.5810474/94‑1 (MQ=60)

                                                                   ATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTG                            <  SRR4302540.9761254/94‑1 (MQ=60)

                                                                    TGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGG                           <  SRR4302540.2922324/94‑1 (MQ=60)

                                                                     GCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGG                          >  SRR4302540.8928105/1‑94 (MQ=60)

                                                                     GCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGG                          >  SRR4302540.4836565/1‑94 (MQ=60)

                                                                     GCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGG                          <  SRR4302540.2132604/94‑1 (MQ=60)

                                                                       GCCATCTGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGGTTCAACATTTCGCCCTTCCTGCTGGGTA                        >  SRR4302540.814147/1‑94 (MQ=60)

                                                                       GCCATATGCCCCTGTATCATGCGGTACCAGATAATCAGCTGACTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTA                        >  SRR4302540.4877099/1‑94 (MQ=60)

                                                                       GCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCTCCCTTCCTGCTGGGTA                        >  SRR4302540.4877101/1‑94 (MQ=60)

                                                                       GCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTA                        >  SRR4302540.2106508/1‑94 (MQ=60)

                                                                       GCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTA                        >  SRR4302540.7398060/1‑94 (MQ=60)

                                                                       GCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTA                        >  SRR4302540.1501361/1‑94 (MQ=60)

                                                                       GCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTA                        >  SRR4302540.4877102/1‑94 (MQ=60)

                                                                       GCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTA                        >  SRR4302540.4856222/1‑94 (MQ=60)

                                                                        CCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGATTCAACATTTCCCCCTTCCTGCTGGGTAA                       >  SRR4302540.9790961/1‑94 (MQ=60)

                                                                         CATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAA                      >  SRR4302540.6664779/1‑94 (MQ=60)

                                                                         CATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAA                      >  SRR4302540.1798712/1‑94 (MQ=60)

                                                                          ATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAG                     >  SRR4302540.7578540/1‑94 (MQ=60)

                                                                           TATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGA                    <  SRR4302540.8104247/94‑1 (MQ=60)

                                                                           TATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGA                    <  SRR4302540.2775376/94‑1 (MQ=60)

                                                                           TATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGA                    >  SRR4302540.9113471/1‑94 (MQ=60)

                                                                           TATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGA                    >  SRR4302540.4184252/1‑94 (MQ=60)

                                                                           TATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGA                    >  SRR4302540.6655938/1‑94 (MQ=60)

                                                                            ATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGAC                   <  SRR4302540.8968/94‑1 (MQ=60)

                                                                            ATGCCCCTGTATCATGCGCGACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGAC                   <  SRR4302540.8969/94‑1 (MQ=60)

                                                                             TGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACA                  >  SRR4302540.8581225/1‑94 (MQ=60)

                                                                               CCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATC                <  SRR4302540.5732806/94‑1 (MQ=60)

                                                                               CCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATC                <  SRR4302540.5637457/94‑1 (MQ=60)

                                                                               CCCCTGTATCATGCCGTACCAGATAATCCCCCGCCTTCACCCCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATC                <  SRR4302540.5025651/94‑1 (MQ=60)

                                                                                CCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCG               >  SRR4302540.9931080/1‑94 (MQ=60)

                                                                                CCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCG               <  SRR4302540.6061828/94‑1 (MQ=60)

                                                                                CCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCG               >  SRR4302540.9231633/1‑94 (MQ=60)

                                                                                CCCTGTATCATGCGGTAACAGATAATCACCTGCCTACACTTCCAGCAAGGCGCGGAATACAACATTTCCCCCATCCTGCTGGGTAAAGACATCG               <  SRR4302540.9054208/94‑1 (MQ=60)

                                                                                 CCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGC              >  SRR4302540.1671931/1‑94 (MQ=60)

                                                                                 CCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGC              <  SRR4302540.7343743/94‑1 (MQ=60)

                                                                                 CCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCCC              >  SRR4302540.2351426/1‑94 (MQ=60)

                                                                                  CTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCC             >  SRR4302540.2130571/1‑94 (MQ=60)

                                                                                   TGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCC            >  SRR4302540.401334/1‑94 (MQ=60)

                                                                                   TGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCC            >  SRR4302540.8096652/1‑94 (MQ=60)

                                                                                    GTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCG           >  SRR4302540.1045018/1‑94 (MQ=60)

                                                                                    GTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCG           >  SRR4302540.6604978/1‑94 (MQ=60)

                                                                                      ATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGAT         >  SRR4302540.25358/1‑94 (MQ=60)

                                                                                      ATCATGCGGTACCAGATAAACACCTGCCTTCCCTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGAT         <  SRR4302540.308502/94‑1 (MQ=60)

                                                                                       TCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATT        <  SRR4302540.4360040/94‑1 (MQ=60)

                                                                                       TCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATT        <  SRR4302540.8931947/94‑1 (MQ=60)

                                                                                        CATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCtccttacttgtggggaaagacaacgcccgatttc       >  SRR4302540.3305511/1‑60 (MQ=60)

                                                                                        CATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCTCCCTTCCTGCTGGGTAAAGACATCGCCCGATTC       >  SRR4302540.5300246/1‑94 (MQ=60)

                                                                                        CATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTC       <  SRR4302540.2307109/94‑1 (MQ=60)

                                                                                        CATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGGTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTC       >  SRR4302540.3305513/1‑94 (MQ=60)

                                                                                         ATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCA      >  SRR4302540.5214195/1‑94 (MQ=60)

                                                                                         ATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCA      >  SRR4302540.6514476/1‑94 (MQ=60)

                                                                                            CGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACAT   >  SRR4302540.3229347/1‑94 (MQ=60)

                                                                                             GGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATA  >  SRR4302540.5073397/1‑94 (MQ=60)

                                                                                             GGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATA  >  SRR4302540.1955150/1‑94 (MQ=60)

CGCGCCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATA  >  NC_000913/2975714‑2975900

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`