Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,961,966	A→G	intergenic (‑122/+14)	gppA ← / ← rhlB	guanosine pentaphosphatase/putative ATP‑dependent RNA helicase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,961,966	0	A	G	100.0%	863.5 / NA	263	intergenic (‑122/+14)	gppA/rhlB	guanosine pentaphosphatase/putative ATP‑dependent RNA helicase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (135/128); total (135/128)

Only 100 of 268 total aligned reads displayed.

GCTGCATTCTTTCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTATGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGCGCGTGAGGCGC  >  NC_000913/3961876‑3962055

  tGCATTCTTTCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGAc                                                                                       >  2:3175095/1‑93 (MQ=255)

     aTTCTTTCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACAtt                                                                                    <  1:1289785/93‑1 (MQ=255)

      ttCTTTCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACAttt                                                                                   >  2:6219025/1‑93 (MQ=255)

       tCTTTCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACAtttt                                                                                  >  1:2347915/1‑93 (MQ=255)

        cTTTCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACAttttt                                                                                 <  1:734401/93‑1 (MQ=255)

        cTTTCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACAttttt                                                                                 >  1:2046036/1‑93 (MQ=255)

         tttCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACAtttttt                                                                                >  1:5853867/1‑93 (MQ=255)

         tttCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACAtttttt                                                                                <  1:4808075/93‑1 (MQ=255)

           tCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTtttat                                                                              <  2:3331121/93‑1 (MQ=255)

           tCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTtttat                                                                              <  1:5409792/93‑1 (MQ=255)

           tCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTtttat                                                                              >  2:4367277/1‑93 (MQ=255)

           tCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTtttat                                                                              <  2:5393220/93‑1 (MQ=255)

            cACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTtttatt                                                                             <  1:324738/93‑1 (MQ=255)

             aCCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTtttattt                                                                            >  2:2161201/1‑93 (MQ=255)

             aCCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTtttattt                                                                            >  2:5506768/1‑93 (MQ=255)

             aCCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTtttattt                                                                            <  1:790494/93‑1 (MQ=255)

              ccTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTtttattta                                                                           >  2:2840644/1‑93 (MQ=255)

              ccTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTtttattta                                                                           >  2:3902564/1‑93 (MQ=255)

               cTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTaa                                                                          <  1:5596712/93‑1 (MQ=255)

               cTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTaa                                                                          <  1:5454523/93‑1 (MQ=255)

               cTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTaa                                                                          <  1:4595522/93‑1 (MQ=255)

                tGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAAc                                                                         >  2:1249613/1‑93 (MQ=255)

                 gAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAAcc                                                                        <  1:5945633/93‑1 (MQ=255)

                   aTCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGAGTGACATTTTTTATTTAACCTg                                                                      >  1:6110253/1‑93 (MQ=255)

                    tCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGa                                                                     <  2:6306635/93‑1 (MQ=255)

                      aCTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAac                                                                   <  2:277081/93‑1 (MQ=255)

                      aCTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAac                                                                   <  1:4953837/93‑1 (MQ=255)

                      aCTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAac                                                                   >  2:1484566/1‑93 (MQ=255)

                      aCTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAac                                                                   >  2:3712123/1‑93 (MQ=255)

                           ctacAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAacgacga                                                              <  2:3556667/93‑1 (MQ=255)

                              cAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAAcgacgacga                                                           >  2:6128033/1‑93 (MQ=255)

                               aGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGAt                                                          <  1:552403/93‑1 (MQ=255)

                               aGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGAt                                                          <  2:2717036/93‑1 (MQ=255)

                                gTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGAtt                                                         <  2:5769199/93‑1 (MQ=255)

                                 tAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTa                                                        <  1:537180/93‑1 (MQ=255)

                                 tAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTa                                                        >  1:1978034/1‑93 (MQ=255)

                                 tAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTa                                                        <  1:5730844/93‑1 (MQ=255)

                                 tAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTa                                                        <  2:3054153/93‑1 (MQ=255)

                                 tAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTa                                                        <  1:216711/93‑1 (MQ=255)

                                 tAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTa                                                        <  1:708101/93‑1 (MQ=255)

                                  aaGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTAc                                                       <  1:3343270/93‑1 (MQ=255)

                                  aaGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTAc                                                       <  1:6285553/93‑1 (MQ=255)

                                  aaGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTAc                                                       <  1:3794572/93‑1 (MQ=255)

                                   aGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTAcg                                                      >  1:4386689/1‑93 (MQ=255)

                                   aGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTAcg                                                      >  2:2919745/1‑93 (MQ=255)

                                    gCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTAcgc                                                     >  2:568749/1‑93 (MQ=255)

                                    gCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTAcgc                                                     >  2:5130223/1‑93 (MQ=255)

                                    gCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTAcgc                                                     >  2:1760055/1‑93 (MQ=255)

                                        aTCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAg                                                 >  2:1376301/1‑93 (MQ=255)

                                        aTCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAg                                                 >  1:3987764/1‑93 (MQ=255)

                                         tCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGCACGACGACGATTACGCGGAgc                                                >  2:3720230/1‑93 (MQ=255)

                                         tCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAgc                                                <  2:2886817/93‑1 (MQ=255)

                                          cGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAgcg                                               >  2:4758494/1‑93 (MQ=255)

                                            ggATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGcc                                             <  1:3825605/93‑1 (MQ=255)

                                            ggATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGcc                                             >  2:4116550/1‑93 (MQ=255)

                                              attcattcTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAg                                           <  2:1650017/93‑1 (MQ=255)

                                               ttcattcTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGt                                          >  1:4034535/1‑93 (MQ=255)

                                               ttcattcTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGt                                          >  1:2281513/1‑93 (MQ=255)

                                                tcattcTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTa                                         >  2:1173693/1‑93 (MQ=255)

                                                tcattcTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTa                                         <  1:3126832/93‑1 (MQ=255)

                                                  attcTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTacg                                       >  1:4133913/1‑93 (MQ=255)

                                                   ttcTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTacga                                      >  2:1841718/1‑93 (MQ=255)

                                                   ttcTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTacga                                      <  2:4859831/93‑1 (MQ=255)

                                                   ttcTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTacga                                      <  1:2968053/93‑1 (MQ=255)

                                                   ttcTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTacga                                      >  1:906485/1‑93 (MQ=255)

                                                   ttcTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTacga                                      >  1:2657764/1‑93 (MQ=255)

                                                     ctctTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTacgacg                                    <  2:230568/93‑1 (MQ=255)

                                                       ctTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGAcgcg                                  <  1:5772719/93‑1 (MQ=255)

                                                       ctTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGAcgcg                                  >  1:1713385/1‑93 (MQ=255)

                                                          gCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGAc                               >  2:3801387/1‑93 (MQ=255)

                                                          gCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGAc                               >  2:405859/1‑93 (MQ=255)

                                                             aTCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCAt                            >  2:2484497/1‑93 (MQ=255)

                                                             aTCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCAt                            <  2:1589483/93‑1 (MQ=255)

                                                              tCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCAtt                           >  2:5002583/1‑93 (MQ=255)

                                                              tCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCAtt                           >  1:165995/1‑93 (MQ=255)

                                                                ttGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGc                         >  2:2275230/1‑93 (MQ=255)

                                                                  gATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCt                       <  2:2677691/93‑1 (MQ=255)

                                                                  gATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCt                       >  1:3485845/1‑93 (MQ=255)

                                                                   aTACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCtg                      >  2:1914/1‑93 (MQ=255)

                                                                    tACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCtgt                     >  1:3779667/1‑93 (MQ=255)

                                                                     aCAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCtgtg                    <  1:1888690/93‑1 (MQ=255)

                                                                     aCAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCtgtg                    <  1:2527820/93‑1 (MQ=255)

                                                                      cAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTgc                   <  1:1000611/93‑1 (MQ=255)

                                                                       aGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTgcg                  >  1:2571196/1‑93 (MQ=255)

                                                                         tttGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGcgcg                >  2:3519537/1‑93 (MQ=255)

                                                                         tttGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGcgcg                >  1:2882616/1‑93 (MQ=255)

                                                                          ttGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCgg               <  1:135956/93‑1 (MQ=255)

                                                                          ttGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCgg               <  2:2026365/93‑1 (MQ=255)

                                                                           tGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCggg              <  2:782011/93‑1 (MQ=255)

                                                                            gAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCggga             >  2:5554615/1‑92 (MQ=255)

                                                                             aaTGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGgcg            >  1:4465979/1‑93 (MQ=255)

                                                                             aaTGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGgcg            >  2:2060019/1‑93 (MQ=255)

                                                                              aTGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGgcgc           <  1:158001/93‑1 (MQ=255)

                                                                               tGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGcgcg          <  2:4175447/93‑1 (MQ=255)

                                                                                gATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGCGCGt         >  2:4281128/1‑93 (MQ=255)

                                                                                gATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGCGCGt         <  1:963150/93‑1 (MQ=255)

                                                                                  ttttGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGCGCGTGa       >  2:5918230/1‑93 (MQ=255)

                                                                                    ttGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGCGCGTGAgg     >  1:5216601/1‑93 (MQ=255)

                                                                                     tGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGCGCGTGAGgc    <  1:4222757/93‑1 (MQ=255)

                                                                                       aGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGCGCGTGAGgcgc  <  2:345749/93‑1 (MQ=255)

GCTGCATTCTTTCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTATGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGCGCGTGAGGCGC  >  NC_000913/3961876‑3962055

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGCTGCATTCTTTCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTATGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGCGCGTGAGGCGCAGCG  >  NC_000913/3961875‑3962059

GGCTGCATTCTTTCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTG                                                                                             >  SRR4302533.1348685/1‑94 (MQ=60)

  CTGCATTCTTTCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGAC                                                                                           <  SRR4302533.877555/94‑1 (MQ=60)

   TGCATTCTTTCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACT                                                                                          >  SRR4302533.4852704/1‑94 (MQ=60)

   TGCATTCTTTCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACA                                                                                          >  SRR4302533.3805559/1‑94 (MQ=60)

    GCATTCTTTCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACAT                                                                                         <  SRR4302533.2463765/94‑1 (MQ=60)

     CATTCTTTCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATT                                                                                        <  SRR4302533.2908639/94‑1 (MQ=60)

     CATTCTTTCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATT                                                                                        >  SRR4302533.6063363/1‑94 (MQ=60)

      ATTCTTTCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTT                                                                                       <  SRR4302533.4413159/94‑1 (MQ=60)

      ATTCTTTCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTT                                                                                       <  SRR4302533.1297547/94‑1 (MQ=60)

      ATTCTTTCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTT                                                                                       >  SRR4302533.1659298/1‑94 (MQ=60)

       TTCTTTCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTT                                                                                      >  SRR4302533.2362443/1‑94 (MQ=60)

        TCTTTCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTT                                                                                     >  SRR4302533.2058653/1‑94 (MQ=60)

        TCTTTCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTT                                                                                     >  SRR4302533.3829060/1‑94 (MQ=60)

         CTTTCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTT                                                                                    >  SRR4302533.5889257/1‑94 (MQ=60)

         CTTTCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTT                                                                                    >  SRR4302533.347861/1‑94 (MQ=60)

         CTTTCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTT                                                                                    <  SRR4302533.738722/94‑1 (MQ=60)

          TTTCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTA                                                                                   <  SRR4302533.4837184/94‑1 (MQ=60)

            TCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATT                                                                                 <  SRR4302533.351670/94‑1 (MQ=60)

            TCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATT                                                                                 <  SRR4302533.5442313/94‑1 (MQ=60)

            TCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATT                                                                                 >  SRR4302533.4413204/1‑94 (MQ=60)

             CACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTT                                                                                <  SRR4302533.2251153/94‑1 (MQ=60)

             CACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTT                                                                                <  SRR4302533.326719/94‑1 (MQ=60)

             CACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTT                                                                                >  SRR4302533.2781162/1‑94 (MQ=60)

             CACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTT                                                                                <  SRR4302533.5526191/94‑1 (MQ=60)

              ACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTA                                                                               <  SRR4302533.795148/94‑1 (MQ=60)

               CCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAA                                                                              >  SRR4302533.639676/1‑94 (MQ=60)

               CCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAA                                                                              <  SRR4302533.741846/94‑1 (MQ=60)

                CTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAAC                                                                             <  SRR4302533.5630528/94‑1 (MQ=60)

                CTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAAC                                                                             <  SRR4302533.4623361/94‑1 (MQ=60)

                CTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAAC                                                                             >  SRR4302533.505462/1‑94 (MQ=60)

                CTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAAC                                                                             <  SRR4302533.5487381/94‑1 (MQ=60)

                CTGAAACACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAAC                                                                             >  SRR4302533.6225580/1‑94 (MQ=60)

                 TGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGCATGATTTTGAGTGTGACATTTTTTATTTAACC                                                                            >  SRR4302533.5787205/1‑94 (MQ=60)

                 TGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACC                                                                            <  SRR4302533.3837044/94‑1 (MQ=60)

                  GAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCT                                                                           <  SRR4302533.5407244/94‑1 (MQ=60)

                  GAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCT                                                                           <  SRR4302533.5981589/94‑1 (MQ=60)

                  GAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCT                                                                           >  SRR4302533.3311820/1‑94 (MQ=60)

                  GAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCT                                                                           <  SRR4302533.1312698/94‑1 (MQ=60)

                   AATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACTTTTTTTATTTAACCTG                                                                          >  SRR4302533.5300562/1‑94 (MQ=60)

                   AATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTG                                                                          <  SRR4302533.655106/94‑1 (MQ=60)

                   AATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGAGTGACATTTTTTATTTAACCTG                                                                          >  SRR4302533.6147137/1‑94 (MQ=60)

                    ATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGA                                                                         <  SRR4302533.962845/94‑1 (MQ=60)

                    ATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGA                                                                         >  SRR4302533.1198993/1‑94 (MQ=60)

                      CACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAAC                                                                       <  SRR4302533.1570680/94‑1 (MQ=60)

                       ACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACG                                                                      <  SRR4302533.4983843/94‑1 (MQ=60)

                       ACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGAAATTTTTTATTTAACCTGAACG                                                                      >  SRR4302533.3173130/1‑94 (MQ=60)

                         TTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGAC                                                                    <  SRR4302533.1696653/94‑1 (MQ=60)

                         TTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGAC                                                                    <  SRR4302533.516758/94‑1 (MQ=60)

                         TTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTCTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGAC                                                                    <  SRR4302533.3405149/94‑1 (MQ=60)

                            CTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGAC                                                                 <  SRR4302533.738192/94‑1 (MQ=60)

                            CTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGAC                                                                 >  SRR4302533.4620157/1‑94 (MQ=60)

                              ACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGA                                                               <  SRR4302533.722619/94‑1 (MQ=60)

                                AGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATT                                                             >  SRR4302533.258278/1‑94 (MQ=60)

                                AGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATT                                                             <  SRR4302533.555678/94‑1 (MQ=60)

                                 GTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTA                                                            >  SRR4302533.1990147/1‑94 (MQ=60)

                                  TAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTAC                                                           <  SRR4302533.218071/94‑1 (MQ=60)

                                  TAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTAC                                                           >  SRR4302533.2308273/1‑94 (MQ=60)

                                  TAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTAC                                                           <  SRR4302533.540376/94‑1 (MQ=60)

                                  TAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTAC                                                           >  SRR4302533.3187975/1‑94 (MQ=60)

                                  TAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTAC                                                           <  SRR4302533.5765445/94‑1 (MQ=60)

                                  TAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTAC                                                           <  SRR4302533.712282/94‑1 (MQ=60)

                                   AAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACG                                                          >  SRR4302533.4413175/1‑94 (MQ=60)

                                   AAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACG                                                          >  SRR4302533.2038982/1‑94 (MQ=60)

                                   AAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACG                                                          <  SRR4302533.3817794/94‑1 (MQ=60)

                                   AAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACG                                                          <  SRR4302533.1396328/94‑1 (MQ=60)

                                   AAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACG                                                          <  SRR4302533.3363931/94‑1 (MQ=60)

                                   AAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACG                                                          <  SRR4302533.6323056/94‑1 (MQ=60)

                                     GCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCG                                                        <  SRR4302533.5600100/94‑1 (MQ=60)

                                     GCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCG                                                        <  SRR4302533.3133507/94‑1 (MQ=60)

                                      CTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGG                                                       <  SRR4302533.2084427/94‑1 (MQ=60)

                                       TCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGA                                                      <  SRR4302533.4763539/94‑1 (MQ=60)

                                        CATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAG                                                     >  SRR4302533.925360/1‑94 (MQ=60)

                                        CATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAG                                                     >  SRR4302533.4012056/1‑94 (MQ=60)

                                        CATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAG                                                     <  SRR4302533.5974671/94‑1 (MQ=60)

                                         ATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGC                                                    <  SRR4302533.4653434/94‑1 (MQ=60)

                                           CGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGC                                                  >  SRR4302533.580436/1‑94 (MQ=60)

                                             GGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCA                                                <  SRR4302533.3848994/94‑1 (MQ=60)

                                             GGATTCATTCTCTTGCCATCTTGATACAGGTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCA                                                >  SRR4302533.6108492/1‑94 (MQ=60)

                                               ATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGT                                              >  SRR4302533.2295637/1‑94 (MQ=60)

                                               ATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGT                                              >  SRR4302533.4059095/1‑94 (MQ=60)

                                                TTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTA                                             >  SRR4302533.4283022/1‑94 (MQ=60)

                                                 TCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTAC                                            <  SRR4302533.3146054/94‑1 (MQ=60)

                                                 TCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTAC                                            <  SRR4302533.5702756/94‑1 (MQ=60)

                                                  CATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACG                                           <  SRR4302533.5470067/94‑1 (MQ=60)

                                                  CATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACG                                           >  SRR4302533.4159004/1‑94 (MQ=60)

                                                  CATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACG                                           >  SRR4302533.4159003/1‑94 (MQ=60)

                                                  CATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACG                                           >  SRR4302533.2092490/1‑94 (MQ=60)

                                                   ATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGA                                          >  SRR4302533.2674092/1‑94 (MQ=60)

                                                   ATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGA                                          >  SRR4302533.911799/1‑94 (MQ=60)

                                                   ATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGA                                          >  SRR4302533.3857426/1‑94 (MQ=60)

                                                    TTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGAC                                         <  SRR4302533.2986198/94‑1 (MQ=60)

                                                     TCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACG                                        <  SRR4302533.3896118/94‑1 (MQ=60)

                                                     TCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACG                                        <  SRR4302533.4530648/94‑1 (MQ=60)

                                                      CTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGC                                       >  SRR4302533.402186/1‑94 (MQ=60)

                                                       TCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCG                                      >  SRR4302533.1723768/1‑94 (MQ=60)

                                                       TCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCG                                      >  SRR4302533.1723769/1‑94 (MQ=60)

                                                        CTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGG                                     <  SRR4302533.5807577/94‑1 (MQ=60)

                                                        CTTGCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTGAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGG                                     >  SRR4302533.3634554/1‑94 (MQ=60)

                                                           GCCATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACC                                  >  SRR4302533.2494571/1‑94 (MQ=60)

                                                              ATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATT                               >  SRR4302533.167048/1‑94 (MQ=60)

                                                              ATCTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATT                               <  SRR4302533.803130/94‑1 (MQ=60)

                                                                CTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGC                             >  SRR4302533.2663354/1‑94 (MQ=60)

                                                                CTTGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGC                             <  SRR4302533.4228490/94‑1 (MQ=60)

                                                                  TGATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCT                           >  SRR4302533.3507343/1‑94 (MQ=60)

                                                                    ATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGT                         <  SRR4302533.5948715/94‑1 (MQ=60)

                                                                    ATACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGT                         >  SRR4302533.3802820/1‑94 (MQ=60)

                                                                     TACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTG                        >  SRR4302533.1993602/1‑94 (MQ=60)

                                                                     TACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTG                        >  SRR4302533.1820423/1‑94 (MQ=60)

                                                                     TACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTG                        <  SRR4302533.1953593/94‑1 (MQ=60)

                                                                      ACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGC                       <  SRR4302533.2543382/94‑1 (MQ=60)

                                                                      ACAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGC                       <  SRR4302533.1900228/94‑1 (MQ=60)

                                                                       CAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAGCCTGAACGCCGCCGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCG                      <  SRR4302533.5887029/94‑1 (MQ=60)

                                                                       CAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCG                      <  SRR4302533.1006452/94‑1 (MQ=60)

                                                                       CAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCG                      <  SRR4302533.5519149/94‑1 (MQ=60)

                                                                       CAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCG                      >  SRR4302533.2587018/1‑94 (MQ=60)

                                                                       CAGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCG                      >  SRR4302533.2845664/1‑94 (MQ=60)

                                                                        AGTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGC                     >  SRR4302533.5461102/1‑94 (MQ=60)

                                                                         GTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGTGCCAGTACGACGCGGACCATTGCCTGTGCGCG                    >  SRR4302533.2986238/1‑94 (MQ=60)

                                                                         GTTTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCG                    >  SRR4302533.2900348/1‑94 (MQ=60)

                                                                           TTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGG                  <  SRR4302533.136815/94‑1 (MQ=60)

                                                                           TTGAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGG                  >  SRR4302533.4170313/1‑94 (MQ=60)

                                                                             GAATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGCG                >  SRR4302533.4492991/1‑94 (MQ=60)

                                                                              AATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGCGC               >  SRR4302533.5356225/1‑94 (MQ=60)

                                                                               ATGATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGCGCG              <  SRR4302533.159009/94‑1 (MQ=60)

                                                                                 GATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGCGCGTG            <  SRR4302533.968808/94‑1 (MQ=60)

                                                                                 GATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGCGCGTG            <  SRR4302533.5728716/94‑1 (MQ=60)

                                                                                  ATTTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGCGCGTGA           >  SRR4302533.2670847/1‑94 (MQ=60)

                                                                                    TTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGCGCGTGAGG         >  SRR4302533.5248007/1‑94 (MQ=60)

                                                                                    TTTGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGCGCGTGAGG         <  SRR4302533.4043323/94‑1 (MQ=60)

                                                                                      TGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGCGCGTGAGGCG       <  SRR4302533.4248287/94‑1 (MQ=60)

                                                                                      TGAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGCGCGTGAGGCG       <  SRR4302533.1001496/94‑1 (MQ=60)

                                                                                       GAGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGCGCGTGAGGCGC      >  SRR4302533.2324131/1‑94 (MQ=60)

                                                                                        AGTGTGACATTTTTTATTTATCCTCAACGACGACGATTACGCGGAGCGCCAGTACGCCGCGGACCATTGCCTGTGCGCGGGCGCGTGAGGCGCA     <  SRR4302533.18895/94‑1 (MQ=60)

                                                                                        AGTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGCGCGTGAGGCGCA     >  SRR4302533.2664668/1‑94 (MQ=60)

                                                                                         GTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGCGCGTGAGGCGCAG    <  SRR4302533.1807765/94‑1 (MQ=60)

                                                                                         GTGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGCGCGTGAGGCGCAG    <  SRR4302533.4538691/94‑1 (MQ=60)

                                                                                          TGTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGCGCGTGAGGCGCAGC   <  SRR4302533.4721738/94‑1 (MQ=60)

                                                                                           GTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGCGCGTGAGGGGCAGCG  >  SRR4302533.3181568/1‑94 (MQ=60)

                                                                                           GTGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGCGCGTGAGGCGCAGCG  <  SRR4302533.2465128/94‑1 (MQ=60)

GGCTGCATTCTTTCACCTGAATCACTTACTACAGTAAGCTCATCGGGATTCATTCTCTTGCCATCTTGATACAGTTTGAATGATTTTGAGTATGACATTTTTTATTTAACCTGAACGACGACGATTACGCGGAGCGCCAGTACGACGCGGACCATTGCCTGTGCGCGGGCGCGTGAGGCGCAGCG  >  NC_000913/3961875‑3962059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`