Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,962,662 A→G M195T (ATG→ACG)  rhlB ← putative ATP‑dependent RNA helicase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,962,6620AG99.8% 1416.7 / ‑5.9 441M195T (ATG→ACG) rhlBputative ATP‑dependent RNA helicase
Reads supporting (aligned to +/- strand):  ref base A (0/1);  new base G (149/291);  total (149/292)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01

Only 100 of 465 total aligned reads displayed.

TGTTCCGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCATGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATGCGATCGGCTTCG  >  NC_000913/3962572‑3962751
                                                                                          |                                                                                         
tGTTCCGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTg                                                                                         <  1:8797602/93‑1 (MQ=255)
tGTTCCGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTg                                                                                         >  1:1516941/1‑93 (MQ=255)
   tCCGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTg                                                                                      >  2:3776387/1‑93 (MQ=255)
   tCCGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTg                                                                                      >  2:78440/1‑93 (MQ=255)
   tCCGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTg                                                                                      <  1:9059985/93‑1 (MQ=255)
    ccGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGa                                                                                     <  2:5141974/93‑1 (MQ=255)
    ccGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGa                                                                                     >  2:713339/1‑93 (MQ=255)
     cGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAg                                                                                    <  2:9312542/93‑1 (MQ=255)
      ggTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAgg                                                                                   >  1:4620017/1‑93 (MQ=255)
      ggTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAgg                                                                                   <  1:8445091/93‑1 (MQ=255)
      ggTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAgg                                                                                   <  1:3657583/93‑1 (MQ=255)
       gTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGgc                                                                                  <  2:4524492/93‑1 (MQ=255)
        ttCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGGGTTGAGgcg                                                                                 >  1:3336694/1‑93 (MQ=255)
         tCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGgcgc                                                                                <  1:2013475/93‑1 (MQ=255)
          ccACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCt                                                                               >  2:6812258/1‑93 (MQ=255)
            aCTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTgg                                                                             >  2:5031311/1‑93 (MQ=255)
            aCTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTgg                                                                             >  2:2307340/1‑93 (MQ=255)
             cTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGt                                                                            >  1:1762220/1‑93 (MQ=255)
               tCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGttt                                                                          <  2:4676319/93‑1 (MQ=255)
               tCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGttt                                                                          <  2:1125336/93‑1 (MQ=255)
                cAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTg                                                                         >  1:2738431/1‑93 (MQ=255)
                  atatatTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCa                                                                       <  2:6868599/93‑1 (MQ=255)
                  atatatTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCa                                                                       <  1:7991891/93‑1 (MQ=255)
                  atatatTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCa                                                                       <  1:9899324/93‑1 (MQ=255)
                  atatatTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCa                                                                       >  2:7515135/1‑93 (MQ=255)
                  atatatTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCa                                                                       <  2:8941760/93‑1 (MQ=255)
                   tatatTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGGACAGCGTGTTGAGGCGCTGGTTTGCAg                                                                      >  1:5454376/1‑93 (MQ=255)
                    atatTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAgg                                                                     <  2:3474605/93‑1 (MQ=255)
                    atatTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAgg                                                                     <  2:4152456/93‑1 (MQ=255)
                      atTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAggcg                                                                   >  1:1006659/1‑93 (MQ=255)
                      atTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAggcg                                                                   <  2:3262279/93‑1 (MQ=255)
                      atTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAggcg                                                                   >  1:6505649/1‑93 (MQ=255)
                       ttCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAggcgg                                                                  >  1:739281/1‑93 (MQ=255)
                       ttCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAggcgg                                                                  <  1:8533354/93‑1 (MQ=255)
                         cGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCa                                                                >  1:5176654/1‑93 (MQ=255)
                          gggaTTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTTAGGCGCTGGTTTGCAGGCGGCAt                                                               <  1:301493/90‑1 (MQ=255)
                          ggCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCAt                                                               <  1:1000280/93‑1 (MQ=255)
                          ggCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCAt                                                               <  2:1936132/93‑1 (MQ=255)
                           gCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATa                                                              <  1:6117846/93‑1 (MQ=255)
                           gCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATa                                                              >  2:4655263/1‑93 (MQ=255)
                           gCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATa                                                              <  1:2190731/93‑1 (MQ=255)
                           gCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATa                                                              >  2:9399529/1‑93 (MQ=255)
                              ttGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATAcgg                                                           >  1:1144386/1‑93 (MQ=255)
                                gTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATAcggcg                                                         >  1:656578/1‑93 (MQ=255)
                                gTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATAcggcg                                                         >  1:4109780/1‑93 (MQ=255)
                                 ttCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATAcggcgg                                                        >  1:5916400/1‑93 (MQ=255)
                                 ttCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATAcggcgg                                                        >  1:3211584/1‑93 (MQ=255)
                                 ttCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATAcggcgg                                                        >  2:5822777/1‑93 (MQ=255)
                                   cATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGaa                                                      <  1:183495/93‑1 (MQ=255)
                                    aTCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAAc                                                     <  1:7431828/93‑1 (MQ=255)
                                     tCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAAca                                                    >  2:102156/1‑93 (MQ=255)
                                     tCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAAca                                                    >  1:2385976/1‑93 (MQ=255)
                                     tCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGAGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGAATACGGCGGAAca                                                    >  1:757881/1‑93 (MQ=255)
                                      cTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAAcag                                                   >  1:1325322/1‑93 (MQ=255)
                                         cTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAAcagcca                                                <  2:864798/93‑1 (MQ=255)
                                         cTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAAcagcca                                                <  1:9203353/93‑1 (MQ=255)
                                          tCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAAcagccag                                               <  2:265375/93‑1 (MQ=255)
                                           cGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAAcagccagc                                              <  1:9541099/93‑1 (MQ=255)
                                            gAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCg                                             >  1:7809077/1‑93 (MQ=255)
                                            gAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCg                                             <  1:4667950/93‑1 (MQ=255)
                                            gAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCg                                             >  1:7070911/1‑93 (MQ=255)
                                                  cAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGatatt                                       >  1:248294/1‑92 (MQ=255)
                                                  cAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCCGATATc                                       >  2:4060763/1‑93 (MQ=255)
                                                   aGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCt                                      <  2:9495251/93‑1 (MQ=255)
                                                    gTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCtt                                     <  1:3500275/93‑1 (MQ=255)
                                                    gTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCtt                                     <  2:6389605/93‑1 (MQ=255)
                                                     ttCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCttt                                    >  2:8841922/1‑93 (MQ=255)
                                                     ttCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCttt                                    <  2:9717721/93‑1 (MQ=255)
                                                      tCACGTGCCCGGTACGAAAGCGTGGCTGATAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTta                                   <  1:4915940/93‑1 (MQ=255)
                                                      tCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTta                                   <  2:2972118/93‑1 (MQ=255)
                                                          gTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTtaataa                               >  1:683148/1‑93 (MQ=255)
                                                          gTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTtaataa                               <  1:4310182/93‑1 (MQ=255)
                                                          gTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTtaataa                               <  2:628244/93‑1 (MQ=255)
                                                           tACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATaaa                              >  2:8560112/1‑93 (MQ=255)
                                                             cccGGTACGAAAGCGTGTCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGc                            <  1:1657287/93‑1 (MQ=255)
                                                             cccGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGc                            <  1:4796276/93‑1 (MQ=255)
                                                              ccGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGcc                           <  2:4403110/93‑1 (MQ=255)
                                                              ccGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGcc                           <  2:2744265/93‑1 (MQ=255)
                                                              ccGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGcc                           <  2:6563771/93‑1 (MQ=255)
                                                                ggTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCa                         >  2:1588669/1‑93 (MQ=255)
                                                                  tACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGa                       <  2:134800/93‑1 (MQ=255)
                                                                  gaCGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGa                       <  2:7387972/92‑1 (MQ=255)
                                                                   aCGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGAt                      <  1:9355505/93‑1 (MQ=255)
                                                                   aCGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGAt                      <  2:3080499/93‑1 (MQ=255)
                                                                    cGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATc                     <  2:8203492/93‑1 (MQ=255)
                                                                     gAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCg                    >  2:3170913/1‑93 (MQ=255)
                                                                       aaGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTa                  <  1:6385222/93‑1 (MQ=255)
                                                                         gCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACa                <  2:8431379/93‑1 (MQ=255)
                                                                         gCGGGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACa                <  2:2414736/93‑1 (MQ=255)
                                                                          cGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACAt               <  1:9652333/93‑1 (MQ=255)
                                                                          cGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACAt               <  2:5341160/93‑1 (MQ=255)
                                                                            tGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATGc             >  2:6068117/1‑93 (MQ=255)
                                                                            tGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATGc             <  2:9431315/93‑1 (MQ=255)
                                                                              gCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATGCGa           <  1:7166990/93‑1 (MQ=255)
                                                                               cGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATGCGAt          <  1:5707991/93‑1 (MQ=255)
                                                                                    aaCAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATGCGATCGGCt     >  1:5579629/1‑93 (MQ=255)
                                                                                     aCAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATGCGATCGGCtt    >  1:8304648/1‑93 (MQ=255)
                                                                                       aGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATGCGATCGGCTTCg  <  2:8019285/93‑1 (MQ=255)
                                                                                       aGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATGCGATCGGCTTCg  <  1:382228/93‑1 (MQ=255)
                                                                                       aGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATGCGATCGGCTTCg  >  2:3650048/1‑93 (MQ=255)
                                                                                          |                                                                                         
TGTTCCGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCATGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATGCGATCGGCTTCG  >  NC_000913/3962572‑3962751

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 249 total aligned reads displayed.
CTGTTCCGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCATGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATGCGATCGGCTTCGTCCA  >  NC_000913/3962571‑3962755
                                                                                           |                                                                                             
CTGTTCCGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTG                                                                                             <  SRR4302540.6134456/94‑1 (MQ=60)
CTGTTCCGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTG                                                                                             <  SRR4302540.6974446/94‑1 (MQ=60)
CTGTTCCGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTG                                                                                             >  SRR4302540.1533718/1‑94 (MQ=60)
 TGTTCCGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGT                                                                                            <  SRR4302540.8899327/94‑1 (MQ=60)
 TGTTCCGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGT                                                                                            <  SRR4302540.162188/94‑1 (MQ=60)
 TGTTCCGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAAAAGCGTGT                                                                                            >  SRR4302540.2501680/1‑94 (MQ=60)
  TTTCCGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTT                                                                                           <  SRR4302540.1707477/94‑1 (MQ=60)
  GTTCCGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTT                                                                                           <  SRR4302540.1099053/94‑1 (MQ=60)
    TCCGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGA                                                                                         <  SRR4302540.6503742/94‑1 (MQ=60)
    TCCGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGA                                                                                         <  SRR4302540.9168760/94‑1 (MQ=60)
     CCGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAG                                                                                        <  SRR4302540.9884008/94‑1 (MQ=60)
     CCGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAG                                                                                        <  SRR4302540.3124397/94‑1 (MQ=60)
     CCGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAG                                                                                        <  SRR4302540.3227154/94‑1 (MQ=60)
     CCGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAG                                                                                        <  SRR4302540.2265410/94‑1 (MQ=60)
     CCGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAG                                                                                        <  SRR4302540.5628761/94‑1 (MQ=60)
     CCGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAG                                                                                        <  SRR4302540.7354346/94‑1 (MQ=60)
     CCGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACCCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAG                                                                                        <  SRR4302540.8072105/94‑1 (MQ=60)
     CCGGGTCCATCTCAATATATTCGGCATTGTGCATCTGCTCGAACTCCAGTTCACGTACCCGGGACGAAAGCGGGGCGGAGAACAGCGTGTTGAG                                                                                        <  SRR4302540.7642608/94‑1 (MQ=60)
      CGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGG                                                                                       <  SRR4302540.738378/94‑1 (MQ=60)
      CGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGG                                                                                       >  SRR4302540.4669546/1‑94 (MQ=60)
       GGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGC                                                                                      <  SRR4302540.3697633/94‑1 (MQ=60)
       GGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGC                                                                                      >  SRR4302540.7598249/1‑94 (MQ=60)
       GGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGC                                                                                      <  SRR4302540.8543126/94‑1 (MQ=60)
       GGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGC                                                                                      <  SRR4302540.8543127/94‑1 (MQ=60)
        GTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCG                                                                                     >  SRR4302540.4953785/1‑94 (MQ=60)
        GTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCG                                                                                     <  SRR4302540.668174/94‑1 (MQ=60)
        GTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGGGTTGAGGCG                                                                                     >  SRR4302540.3373334/1‑94 (MQ=60)
          TCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCT                                                                                   <  SRR4302540.4329639/94‑1 (MQ=60)
          TCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCT                                                                                   <  SRR4302540.2035240/94‑1 (MQ=60)
          TCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCT                                                                                   >  SRR4302540.4673874/1‑94 (MQ=60)
           CCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTG                                                                                  <  SRR4302540.10144849/94‑1 (MQ=60)
           CCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTG                                                                                  >  SRR4302540.2172109/1‑94 (MQ=60)
            CACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGG                                                                                 <  SRR4302540.9525249/94‑1 (MQ=60)
             ACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGT                                                                                >  SRR4302540.1781336/1‑94 (MQ=60)
             ACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGT                                                                                >  SRR4302540.2332579/1‑94 (MQ=60)
               TTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGGTT                                                                              >  SRR4302540.4835352/1‑94 (MQ=60)
               CTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTT                                                                              <  SRR4302540.2732018/94‑1 (MQ=60)
                TCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTG                                                                             >  SRR4302540.7320279/1‑94 (MQ=60)
                 CAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGC                                                                            >  SRR4302540.9801062/1‑94 (MQ=60)
                  AATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCA                                                                           <  SRR4302540.970105/94‑1 (MQ=60)
                   ATATTTTCGGCATTGTTCATCTGCTCGAGCGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAAAACAGCGTGTTGAGGCGCTGGTTTGCAG                                                                          <  SRR4302540.5675196/94‑1 (MQ=60)
                   ATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAG                                                                          <  SRR4302540.4872631/94‑1 (MQ=60)
                   ATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAG                                                                          >  SRR4302540.7156380/1‑94 (MQ=60)
                   ATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAG                                                                          <  SRR4302540.8084930/94‑1 (MQ=60)
                   ATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAG                                                                          <  SRR4302540.9704732/94‑1 (MQ=60)
                   ATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAG                                                                          <  SRR4302540.10014964/94‑1 (MQ=60)
                   ATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAG                                                                          <  SRR4302540.9521078/94‑1 (MQ=60)
                   ATATATGCGGCATTGTGCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAG                                                                          <  SRR4302540.1417384/94‑1 (MQ=60)
                    TATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGG                                                                         <  SRR4302540.748135/94‑1 (MQ=60)
                     ATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGC                                                                        <  SRR4302540.2836143/94‑1 (MQ=60)
                     ATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGC                                                                        >  SRR4302540.7487680/1‑94 (MQ=60)
                      TATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCG                                                                       >  SRR4302540.1016867/1‑94 (MQ=60)
                      TATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCG                                                                       >  SRR4302540.6960587/1‑94 (MQ=60)
                      TATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCG                                                                       <  SRR4302540.2778660/94‑1 (MQ=60)
                       ATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGG                                                                      >  SRR4302540.747173/1‑94 (MQ=60)
                        TTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGC                                                                     <  SRR4302540.8632499/94‑1 (MQ=60)
                        TTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGC                                                                     <  SRR4302540.1822453/94‑1 (MQ=60)
                         TCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCA                                                                    <  SRR4302540.4826347/94‑1 (MQ=60)
                         TCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCA                                                                    >  SRR4302540.5232995/1‑94 (MQ=60)
                         TCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGAACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCA                                                                    <  SRR4302540.6409722/94‑1 (MQ=60)
                          tgtcagtgtctctccgctcgcaacgcagtgctggtgCCCGGTACGAAATCGTGGCGGAGAACAGCGTGTGGAGGCGCTGGTTTGCAGGCGGCAT                                                                   <  SRR4302540.9277172/58‑1 (MQ=60)
                          CGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCAT                                                                   >  SRR4302540.5491881/1‑94 (MQ=60)
                           GGGATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTTAGGCGCTGGTTTGCAGGCGGCATA                                                                  <  SRR4302540.304480/94‑1 (MQ=60)
                           GGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGTAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATA                                                                  <  SRR4302540.1805654/94‑1 (MQ=60)
                           GGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATA                                                                  <  SRR4302540.1010439/94‑1 (MQ=60)
                           GGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATA                                                                  <  SRR4302540.9455062/94‑1 (MQ=60)
                           GGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATA                                                                  <  SRR4302540.3620524/94‑1 (MQ=60)
                            GCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATAC                                                                 <  SRR4302540.6619313/94‑1 (MQ=60)
                             CATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACG                                                                >  SRR4302540.392658/1‑94 (MQ=60)
                              ATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGGTGGTTTGCAGGCGGCATACGG                                                               >  SRR4302540.3401945/1‑94 (MQ=60)
                              ATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGG                                                               <  SRR4302540.7153960/94‑1 (MQ=60)
                              ATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGG                                                               <  SRR4302540.8981727/94‑1 (MQ=60)
                              ATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGG                                                               <  SRR4302540.869596/94‑1 (MQ=60)
                              ATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGG                                                               >  SRR4302540.1156339/1‑94 (MQ=60)
                              ATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGG                                                               >  SRR4302540.5566258/1‑94 (MQ=60)
                               TTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGGACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCTCTGGTTTGCAGGAGGCTTACGGC                                                              >  SRR4302540.5508990/1‑94 (MQ=60)
                               TTGTACATATGCTCGAACGCCAGTTCACGTGCCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGC                                                              <  SRR4302540.2705732/94‑1 (MQ=60)
                                TGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCG                                                             >  SRR4302540.663581/1‑94 (MQ=60)
                                TGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCG                                                             >  SRR4302540.4154143/1‑94 (MQ=60)
                                TGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCG                                                             <  SRR4302540.4858825/94‑1 (MQ=60)
                                TGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCG                                                             >  SRR4302540.982545/1‑94 (MQ=60)
                                 GTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGG                                                            >  SRR4302540.6145927/1‑94 (MQ=60)
                                 GTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGG                                                            >  SRR4302540.3246448/1‑94 (MQ=60)
                                 GTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGG                                                            <  SRR4302540.2294243/94‑1 (MQ=60)
                                 GTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGG                                                            >  SRR4302540.5981756/1‑94 (MQ=60)
                                  TTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGA                                                           >  SRR4302540.5032338/1‑94 (MQ=60)
                                    CATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAAC                                                         <  SRR4302540.185319/94‑1 (MQ=60)
                                    CATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAAC                                                         >  SRR4302540.230320/1‑94 (MQ=60)
                                    CATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAAC                                                         <  SRR4302540.1000820/94‑1 (MQ=60)
                                    CATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAAA                                                         >  SRR4302540.3167144/1‑94 (MQ=60)
                                     CTCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACA                                                        <  SRR4302540.8123858/94‑1 (MQ=60)
                                     ATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACA                                                        >  SRR4302540.1377981/1‑94 (MQ=60)
                                     ATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACA                                                        <  SRR4302540.7514617/94‑1 (MQ=60)
                                     ATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGAGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGAATACGGCGGAACA                                                        >  SRR4302540.765949/1‑94 (MQ=60)
                                     AGCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACA                                                        <  SRR4302540.1678904/94‑1 (MQ=60)
                                      TCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAG                                                       >  SRR4302540.1339145/1‑94 (MQ=60)
                                      TCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAG                                                       >  SRR4302540.124035/1‑94 (MQ=60)
                                        TGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCC                                                     >  SRR4302540.1207841/1‑94 (MQ=60)
                                        TGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCC                                                     <  SRR4302540.1870629/94‑1 (MQ=60)
                                        TGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCACACGGCGGAACAGCC                                                     <  SRR4302540.2891701/94‑1 (MQ=60)
                                        TGCCCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCC                                                     <  SRR4302540.3501715/94‑1 (MQ=60)
                                          CTCGAACGCCAGTTCACGTGCCCGGTACGAAAGCGGGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAG                                                   <  SRR4302540.9313780/94‑1 (MQ=60)
                                          CTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAG                                                   <  SRR4302540.9313781/94‑1 (MQ=60)
                                          CTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAG                                                   <  SRR4302540.10094698/94‑1 (MQ=60)
                                          CTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAG                                                   <  SRR4302540.9244586/94‑1 (MQ=60)
                                          CTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAG                                                   <  SRR4302540.6783183/94‑1 (MQ=60)
                                          CTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAG                                                   >  SRR4302540.7799132/1‑94 (MQ=60)
                                          CTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAG                                                   <  SRR4302540.262709/94‑1 (MQ=60)
                                          CTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAG                                                   >  SRR4302540.3471678/1‑94 (MQ=60)
                                          CTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAG                                                   >  SRR4302540.5170059/1‑94 (MQ=60)
                                           TCGAACGCCAGTTCACGTACCCGGGACGAAAGCGGGGCGGAGAACAGCGGGTTGAGGCGCTGGTTTGAAGGCGGCATACGGCGGAACAGCCAcg                                                  >  SRR4302540.1578078/1‑92 (MQ=60)
                                            CGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCG                                                 >  SRR4302540.6557280/1‑94 (MQ=60)
                                            CGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCG                                                 >  SRR4302540.7149569/1‑94 (MQ=60)
                                            CGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCG                                                 <  SRR4302540.1871870/94‑1 (MQ=60)
                                            CGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCG                                                 <  SRR4302540.1871867/94‑1 (MQ=60)
                                            CGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCG                                                 >  SRR4302540.7900330/1‑94 (MQ=60)
                                            CGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCG                                                 <  SRR4302540.9654003/94‑1 (MQ=60)
                                            CGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCG                                                 <  SRR4302540.871256/94‑1 (MQ=60)
                                            CGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCG                                                 <  SRR4302540.8597276/94‑1 (MQ=60)
                                            CGAACGCCAGTGCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCG                                                 <  SRR4302540.10159494/94‑1 (MQ=60)
                                             GAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGG                                                >  SRR4302540.7062715/1‑94 (MQ=60)
                                             GAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGG                                                <  SRR4302540.4717912/94‑1 (MQ=60)
                                               ACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGAT                                              <  SRR4302540.5679437/94‑1 (MQ=60)
                                               ACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGAT                                              <  SRR4302540.6603938/94‑1 (MQ=60)
                                               ACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGAT                                              >  SRR4302540.326800/1‑94 (MQ=60)
                                                 GCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATAT                                            <  SRR4302540.578170/94‑1 (MQ=60)
                                                 GCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATAT                                            >  SRR4302540.5883029/1‑94 (MQ=60)
                                                 GCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATAT                                            <  SRR4302540.3595673/94‑1 (MQ=60)
                                                  CCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATT                                           >  SRR4302540.8450956/1‑94 (MQ=60)
                                                  CCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATT                                           >  SRR4302540.5917547/1‑94 (MQ=60)
                                                  CCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATC                                           >  SRR4302540.4548522/1‑94 (MQ=60)
                                                   CAGTTCACGTACCCGGTACGAAAGCGTGGTGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCT                                          >  SRR4302540.8626099/1‑94 (MQ=60)
                                                   CAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCT                                          >  SRR4302540.1034622/1‑94 (MQ=60)
                                                    AGTTCACGTACCCGGTACGAAAGCGTGGCGGAGGACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGACAGCGGATATCTT                                         >  SRR4302540.7851879/1‑94 (MQ=60)
                                                    AGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTT                                         >  SRR4302540.4275164/1‑94 (MQ=60)
                                                     GTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTT                                        >  SRR4302540.3585353/1‑94 (MQ=60)
                                                     GTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTT                                        <  SRR4302540.3538399/94‑1 (MQ=60)
                                                     GTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTT                                        <  SRR4302540.2492291/94‑1 (MQ=60)
                                                     GTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTT                                        >  SRR4302540.8181408/1‑94 (MQ=60)
                                                       TCACGTGCCCGGTACGAAAGCGTGGCTGATAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAA                                      <  SRR4302540.4968878/94‑1 (MQ=60)
                                                       TCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAA                                      <  SRR4302540.4968879/94‑1 (MQ=60)
                                                       TCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAA                                      <  SRR4302540.6611597/94‑1 (MQ=60)
                                                       TCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAA                                      <  SRR4302540.1807100/94‑1 (MQ=60)
                                                        CACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGGAGAGCCAGCGGATATCTTTAAT                                     >  SRR4302540.3846754/1‑94 (MQ=60)
                                                         ACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATA                                    >  SRR4302540.160808/1‑94 (MQ=60)
                                                         ACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATA                                    <  SRR4302540.3842777/94‑1 (MQ=60)
                                                          CGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACCGCCAGCGGATATCTTTAATAA                                   >  SRR4302540.5649370/1‑94 (MQ=60)
                                                          CGTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAA                                   >  SRR4302540.690478/1‑94 (MQ=60)
                                                           GTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAA                                  <  SRR4302540.2530843/94‑1 (MQ=60)
                                                           GTACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAA                                  <  SRR4302540.4357101/94‑1 (MQ=60)
                                                            TACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAG                                 <  SRR4302540.145953/94‑1 (MQ=60)
                                                            TACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAG                                 >  SRR4302540.465001/1‑94 (MQ=60)
                                                            TACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAG                                 <  SRR4302540.4333555/94‑1 (MQ=60)
                                                            TACCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAG                                 <  SRR4302540.7960739/94‑1 (MQ=60)
                                                              CCCGGTACGAAAGCGTGTCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCC                               <  SRR4302540.1675346/94‑1 (MQ=60)
                                                              CCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCC                               >  SRR4302540.551899/1‑94 (MQ=60)
                                                              CCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCC                               <  SRR4302540.4847601/94‑1 (MQ=60)
                                                              CCCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCC                               <  SRR4302540.3871006/94‑1 (MQ=60)
                                                               CCGGTACGAAAGCGTGGCGGAGATCAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGCACAGCCAGCGGATATCTTTAATAAAGCCC                              >  SRR4302540.8913607/1‑94 (MQ=60)
                                                               CCGGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCC                              >  SRR4302540.3359298/1‑94 (MQ=60)
                                                                 GGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAG                            >  SRR4302540.8117743/1‑94 (MQ=60)
                                                                 GGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAG                            <  SRR4302540.684075/94‑1 (MQ=60)
                                                                 GGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAG                            <  SRR4302540.9170294/94‑1 (MQ=60)
                                                                 CGTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAG                            <  SRR4302540.2423194/94‑1 (MQ=60)
                                                                  GTACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGA                           >  SRR4302540.5702482/1‑94 (MQ=60)
                                                                   TACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGAT                          <  SRR4302540.1023469/94‑1 (MQ=60)
                                                                   TACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGAT                          >  SRR4302540.7183913/1‑94 (MQ=60)
                                                                    ACGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATC                         <  SRR4302540.9466931/94‑1 (MQ=60)
                                                                     CGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCG                        <  SRR4302540.6493717/94‑1 (MQ=60)
                                                                     CGAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCG                        <  SRR4302540.6173557/94‑1 (MQ=60)
                                                                      GAAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGT                       >  SRR4302540.9431395/1‑94 (MQ=60)
                                                                      GAAAGCGTGGCGGAGAACAGCATGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGT                       <  SRR4302540.5600438/94‑1 (MQ=60)
                                                                       AAAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTA                      >  SRR4302540.4064720/1‑94 (MQ=60)
                                                                        AAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTAC                     >  SRR4302540.3042406/1‑94 (MQ=60)
                                                                        AAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTAC                     <  SRR4302540.6456303/94‑1 (MQ=60)
                                                                        AAGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTAC                     <  SRR4302540.76529/94‑1 (MQ=60)
                                                                         AGCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACA                    <  SRR4302540.2092553/94‑1 (MQ=60)
                                                                          GCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACAT                   <  SRR4302540.8846829/94‑1 (MQ=60)
                                                                          GCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACAT                   <  SRR4302540.7892610/94‑1 (MQ=60)
                                                                          GCGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTGTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACAT                   <  SRR4302540.1654993/94‑1 (MQ=60)
                                                                           CGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATG                  <  SRR4302540.6405467/94‑1 (MQ=60)
                                                                           CGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATG                  >  SRR4302540.2118930/1‑94 (MQ=60)
                                                                           CGTGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATG                  <  SRR4302540.9765983/94‑1 (MQ=60)
                                                                             TGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGCTATCTTTAATAAAGCCCAGATCGTACATGCG                >  SRR4302540.9443935/1‑94 (MQ=60)
                                                                             TGGCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATGCG                <  SRR4302540.9697536/94‑1 (MQ=60)
                                                                               GCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATTCGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATGCGAT              <  SRR4302540.8562877/94‑1 (MQ=60)
                                                                               GCGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATGCGAT              <  SRR4302540.7246895/94‑1 (MQ=60)
                                                                                CGGAGAAGAGCGTGTTGAGGCGCTGGTTTGCAGGCGCCATGCGGCGGAACAGCCAGCTGATATCTTGAATAAAGCCCAGATCGTACATGCGATC             <  SRR4302540.6336507/94‑1 (MQ=60)
                                                                                CGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATGCGATC             <  SRR4302540.747681/94‑1 (MQ=60)
                                                                                CGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATGCGATC             <  SRR4302540.4672689/94‑1 (MQ=60)
                                                                                CGGAGAACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATGCGATC             <  SRR4302540.6182219/94‑1 (MQ=60)
                                                                                     AACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATGCGATCGGCTT        >  SRR4302540.5490187/1‑94 (MQ=60)
                                                                                     AACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATGCGATCGGCTT        >  SRR4302540.8401081/1‑94 (MQ=60)
                                                                                      ACAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATCCGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATGCGATCGGCTTC       <  SRR4302540.2492578/94‑1 (MQ=60)
                                                                                       CAGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATGCGATCGGCTTCG      >  SRR4302540.4695609/1‑94 (MQ=60)
                                                                                       CAGCGTATTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATGCGATCGGCTTCG      >  SRR4302540.4725695/1‑94 (MQ=60)
                                                                                        AGCGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATGCGATCGGCTTCGT     <  SRR4302540.386181/94‑1 (MQ=60)
                                                                                          CGTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATGCGATCGGCTTCGTCC   >  SRR4302540.6214589/1‑94 (MQ=60)
                                                                                           GTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCTTACATGCGATCGGCTTCGTCCC  >  SRR4302540.3487705/1‑94 (MQ=60)
                                                                                           GTGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATGCGATCGGCTTCGTCCA  <  SRR4302540.6611180/94‑1 (MQ=60)
                                                                                           |                                                                                             
CTGTTCCGGTTCCACTTCAATATATTCGGCATTGTTCATCTGCTCGAACGCCAGTTCACGTACCCGGTACGAAAGCGTGGCGGAGAACAGCATGTTGAGGCGCTGGTTTGCAGGCGGCATACGGCGGAACAGCCAGCGGATATCTTTAATAAAGCCCAGATCGTACATGCGATCGGCTTCGTCCA  >  NC_000913/3962571‑3962755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑