Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,978,702 C→T S68F (TCC→TTC)  yifK → putative amino acid/amine transport protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,978,7020CT99.6% 963.8 / NA 259S68F (TCC→TTC) yifKputative amino acid/amine transport protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base T (138/120);  minor base G (0/1);  total (138/121)
Fisher's exact test for biased strand distribution p-value = 4.67e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 279 total aligned reads displayed.

TGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTCCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCTGGTCTTACTGGT  >  NC_000913/3978612‑3978791
                                                                                          |                                                                                         
tGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTtcc                                                                                         <  2:568748/93‑1 (MQ=255)
tGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTtcc                                                                                         <  2:3135262/93‑1 (MQ=255)
tGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTtcc                                                                                         <  1:770449/93‑1 (MQ=255)
tGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTtcc                                                                                         <  1:6108955/93‑1 (MQ=255)
tGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTtcc                                                                                         <  1:5278689/93‑1 (MQ=255)
 gAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCt                                                                                        <  1:4797928/93‑1 (MQ=255)
  aaaTGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTc                                                                                       >  2:5894662/1‑93 (MQ=255)
  aaaTGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTc                                                                                       <  2:39784/93‑1 (MQ=255)
  aaaTGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTc                                                                                       >  2:181921/1‑93 (MQ=255)
  aaaTGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTc                                                                                       <  1:481940/93‑1 (MQ=255)
     tGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGaa                                                                                    <  1:4732018/93‑1 (MQ=255)
      gggccgggccATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAac                                                                                   >  1:2076567/1‑93 (MQ=255)
      gggccgggccATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAac                                                                                   <  2:1936894/93‑1 (MQ=255)
        gcggggccATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAaccg                                                                                 <  1:4302740/90‑1 (MQ=255)
           gggccATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAaccggtt                                                                              >  1:5562076/1‑93 (MQ=255)
           gggccATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAaccggtt                                                                              >  1:4371176/1‑93 (MQ=255)
            ggccATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAaccggtta                                                                             <  1:2221928/93‑1 (MQ=255)
              ccATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAaccggttacc                                                                           >  2:2507002/1‑93 (MQ=255)
               cATCCGTATTGTTGGTCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAaccggttaccg                                                                          >  2:800725/1‑93 (MQ=255)
               cATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAaccggttaccg                                                                          <  2:2404874/93‑1 (MQ=255)
               cATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAaccggttaccg                                                                          >  2:639736/1‑93 (MQ=255)
                aTCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAaccggttaccgg                                                                         >  2:6234700/1‑93 (MQ=255)
                 tCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAACTGTTGTTCCTCGAaccggttagcggt                                                                        >  1:5352499/1‑93 (MQ=255)
                 tCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAaccggttaccggt                                                                        >  1:1020724/1‑93 (MQ=255)
                 tCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAaccggttaccggt                                                                        >  1:1788010/1‑93 (MQ=255)
                 tCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAaccggttaccggt                                                                        >  1:3167576/1‑93 (MQ=255)
                 tCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAaccggttaccggt                                                                        >  1:4065037/1‑93 (MQ=255)
                 tCCGCATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATTGGCGAAATGTTGTTCCTCGAacccgttaccggt                                                                        >  2:2729602/1‑93 (MQ=255)
                  ccGTATTGTTGGCCTATATCATCGCCTGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAaccggttaccggtt                                                                       <  1:5683856/93‑1 (MQ=255)
                     tATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGgttcgt                                                                    <  2:4457268/93‑1 (MQ=255)
                     tATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGgttcgt                                                                    <  1:5310548/93‑1 (MQ=255)
                      aTTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGgttcgtt                                                                   <  1:5990354/93‑1 (MQ=255)
                      aTTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGgttcgtt                                                                   >  2:4024703/1‑93 (MQ=255)
                       ttgttgGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGgttcgttc                                                                  <  1:626423/93‑1 (MQ=255)
                       ttgttgGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGgttcgttc                                                                  <  1:162077/93‑1 (MQ=255)
                           tgGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCg                                                              <  1:652045/93‑1 (MQ=255)
                             gCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGtt                                                            >  2:3002244/1‑93 (MQ=255)
                               cTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCTTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTa                                                          <  2:1276854/93‑1 (MQ=255)
                                tataTCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTAt                                                         <  2:2116933/93‑1 (MQ=255)
                                tataTCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTAt                                                         >  1:2154069/1‑93 (MQ=255)
                                 atatCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATg                                                        >  1:1438275/1‑93 (MQ=255)
                                  tatCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATgc                                                       <  2:1015950/93‑1 (MQ=255)
                                  tatCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGGCACCGGTTAGTTTGCCGTTTTTgc                                                       >  2:3350328/1‑93 (MQ=255)
                                    tcatcGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATgcgc                                                     <  1:2687617/93‑1 (MQ=255)
                                    tcatcGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATgcgc                                                     >  1:3756142/1‑93 (MQ=255)
                                       tcGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATc                                                  >  2:5926009/1‑93 (MQ=255)
                                        cGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCg                                                 <  1:6053691/93‑1 (MQ=255)
                                          ccGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGtt                                               >  1:1558507/1‑93 (MQ=255)
                                          ccGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGtt                                               >  2:470410/1‑93 (MQ=255)
                                           cGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTta                                              <  1:1194605/93‑1 (MQ=255)
                                            gggCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGGTTATGCGCATCGTtat                                             >  2:1110718/1‑93 (MQ=255)
                                             ggCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTtata                                            <  2:1723187/93‑1 (MQ=255)
                                             ggCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTtata                                            >  1:2749263/1‑93 (MQ=255)
                                              gCTGTTCGTCTTTTTCATCATGCGTTCCATGAGCGAAATGTTGTACCTCGATCCGGTTACCGGGTCGTTCCACGTACATGCGCGTCGTTatat                                           >  2:4634603/1‑93 (MQ=255)
                                              gCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTatat                                           <  2:1331641/93‑1 (MQ=255)
                                               cTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATg                                          <  2:2666374/93‑1 (MQ=255)
                                                 gTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAg                                        >  2:4350941/1‑93 (MQ=255)
                                                 gTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAg                                        <  1:3934761/93‑1 (MQ=255)
                                                  ttCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGc                                       >  1:1141285/1‑93 (MQ=255)
                                                  ttCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGc                                       >  2:4501984/1‑93 (MQ=255)
                                                  ttCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGc                                       >  1:5223493/1‑93 (MQ=255)
                                                  ttCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGc                                       <  1:4191959/93‑1 (MQ=255)
                                                   tCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGcc                                      >  1:4110397/1‑93 (MQ=255)
                                                   tCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGCTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGcc                                      >  1:2609727/1‑93 (MQ=255)
                                                      tCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGt                                   >  2:1375797/1‑93 (MQ=255)
                                                      tCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGt                                   >  2:1511290/1‑93 (MQ=255)
                                                      tCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGt                                   >  1:3416269/1‑93 (MQ=255)
                                                       cTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGtt                                  <  2:412363/93‑1 (MQ=255)
                                                        tttttCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTc                                 >  2:4254042/1‑93 (MQ=255)
                                                        tttttCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTc                                 <  2:3493204/93‑1 (MQ=255)
                                                         ttttCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCt                                >  1:4655850/1‑93 (MQ=255)
                                                         ttttCATCATGCGTTCAATGGGCGAAATGTTGTGCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCt                                <  1:3931098/93‑1 (MQ=255)
                                                           ttCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCttt                              <  1:3588155/93‑1 (MQ=255)
                                                             catcatGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTgg                            >  2:5252241/1‑93 (MQ=255)
                                                             catcatGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTgg                            <  2:3828142/93‑1 (MQ=255)
                                                             catcatGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTgg                            >  2:2222612/1‑93 (MQ=255)
                                                             catcatGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGACCGTTCTTTgg                            >  1:4857862/1‑93 (MQ=255)
                                                              atcatGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGc                           <  1:4522342/93‑1 (MQ=255)
                                                                catGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTa                         <  2:281976/93‑1 (MQ=255)
                                                                catGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTa                         <  2:5099232/93‑1 (MQ=255)
                                                                catGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTa                         <  2:6105695/93‑1 (MQ=255)
                                                                 atGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGGTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTAt                        >  1:926846/1‑93 (MQ=255)
                                                                  tGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTAtc                       <  1:2473985/93‑1 (MQ=255)
                                                                  tGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTAtc                       >  2:2577895/1‑93 (MQ=255)
                                                                  tGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTAtc                       >  1:5469379/1‑93 (MQ=255)
                                                                     gTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCa                    <  1:342428/93‑1 (MQ=255)
                                                                     gTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGGTCGTTCGCCGTTTATGCGCATCGTTATCTGCGCCCGTTCTTTGGCTAtctcc                    >  1:2371310/1‑92 (MQ=255)
                                                                         aaTGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGc                <  2:3436624/93‑1 (MQ=255)
                                                                          aTGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGcc               <  1:5131708/93‑1 (MQ=255)
                                                                          aTGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGcc               <  2:5560886/93‑1 (MQ=255)
                                                                          aTGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGcc               >  2:1023525/1‑93 (MQ=255)
                                                                          aTGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCCATCTCACCGcc               <  2:3238915/93‑1 (MQ=255)
                                                                           tGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCt              >  1:6217781/1‑93 (MQ=255)
                                                                           tGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCt              <  1:1985019/93‑1 (MQ=255)
                                                                            gggCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCTg             <  2:2887823/93‑1 (MQ=255)
                                                                            gggCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCTg             <  2:5015418/93‑1 (MQ=255)
                                                                                gAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCTGGTCt         >  2:2653019/1‑93 (MQ=255)
                                                                                     gttgttCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCCGGTCTTACTg    >  1:2281350/1‑93 (MQ=255)
                                                                                       tgtTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCTGGTCTTACTGGt  >  2:2011111/1‑93 (MQ=255)
                                                                                       tgtTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCTGGTCTTACTGGt  >  1:1719014/1‑93 (MQ=255)
                                                                                          |                                                                                         
TGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTCCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCTGGTCTTACTGGT  >  NC_000913/3978612‑3978791

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTCCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCTGGTCTTACTGGTTTA  >  NC_000913/3978609‑3978794
                                                                                             |                                                                                            
CCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGTTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTT                                                                                              <  SRR4302533.4468488/94‑1 (MQ=60)
CCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTT                                                                                              <  SRR4302533.3459252/94‑1 (MQ=60)
CCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTT                                                                                              <  SRR4302533.3649461/94‑1 (MQ=60)
CCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTT                                                                                              >  SRR4302533.88722/1‑94 (MQ=60)
CCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTT                                                                                              <  SRR4302533.3925975/94‑1 (MQ=60)
CCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTT                                                                                              <  SRR4302533.2381134/94‑1 (MQ=60)
  CTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCC                                                                                            <  SRR4302533.915918/94‑1 (MQ=60)
  CTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCC                                                                                            <  SRR4302533.4942000/94‑1 (MQ=60)
  CTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCC                                                                                            <  SRR4302533.5734188/94‑1 (MQ=60)
   TGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCT                                                                                           <  SRR4302533.867230/94‑1 (MQ=60)
   TGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCT                                                                                           <  SRR4302533.774985/94‑1 (MQ=60)
   TGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCT                                                                                           <  SRR4302533.6145834/94‑1 (MQ=60)
   TGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCT                                                                                           <  SRR4302533.5310330/94‑1 (MQ=60)
    GAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTC                                                                                          <  SRR4302533.4826991/94‑1 (MQ=60)
    GAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTC                                                                                          >  SRR4302533.5526014/1‑94 (MQ=60)
     AAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCG                                                                                         <  SRR4302533.2746138/94‑1 (MQ=60)
     AAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCG                                                                                         >  SRR4302533.1215897/1‑94 (MQ=60)
     AAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCG                                                                                         <  SRR4302533.484820/94‑1 (MQ=60)
      AATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGA                                                                                        <  SRR4302533.4999515/94‑1 (MQ=60)
        TGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAAC                                                                                      >  SRR4302533.2089348/1‑94 (MQ=60)
        TGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAAC                                                                                      <  SRR4302533.4760706/94‑1 (MQ=60)
         GGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACC                                                                                     >  SRR4302533.3744367/1‑94 (MQ=60)
         GGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACC                                                                                     <  SRR4302533.4585804/94‑1 (MQ=60)
           GCGGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGG                                                                                   <  SRR4302533.4328626/94‑1 (MQ=60)
             CGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTT                                                                                 >  SRR4302533.5595690/1‑94 (MQ=60)
             CGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTT                                                                                 <  SRR4302533.3898658/94‑1 (MQ=60)
             CGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTT                                                                                 >  SRR4302533.4397563/1‑94 (MQ=60)
             CGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTT                                                                                 <  SRR4302533.2221628/94‑1 (MQ=60)
               GGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTAC                                                                               <  SRR4302533.4232252/94‑1 (MQ=60)
               GGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTAC                                                                               <  SRR4302533.2235652/94‑1 (MQ=60)
               GGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGGTAC                                                                               >  SRR4302533.1105072/1‑94 (MQ=60)
                 CCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCG                                                                             >  SRR4302533.4424988/1‑94 (MQ=60)
                 CCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCG                                                                             <  SRR4302533.3687932/94‑1 (MQ=60)
                   ATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAACTGTTGTTCCTCGAACCGGTTAGCGGT                                                                           >  SRR4302533.5384620/1‑94 (MQ=60)
                   ATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGT                                                                           >  SRR4302533.3608666/1‑94 (MQ=60)
                   ATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGT                                                                           >  SRR4302533.3187070/1‑94 (MQ=60)
                   ATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGT                                                                           >  SRR4302533.1026720/1‑94 (MQ=60)
                   ATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGT                                                                           >  SRR4302533.1798879/1‑94 (MQ=60)
                   ATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGT                                                                           >  SRR4302533.395735/1‑94 (MQ=60)
                   ATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGT                                                                           >  SRR4302533.4089781/1‑94 (MQ=60)
                     CCGTATTGTTGGCCTATATCATCGCCTGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTC                                                                         <  SRR4302533.5718191/94‑1 (MQ=60)
                      CGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCG                                                                        <  SRR4302533.4120009/94‑1 (MQ=60)
                      CGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCG                                                                        <  SRR4302533.2947678/94‑1 (MQ=60)
                       GTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGT                                                                       <  SRR4302533.4715389/94‑1 (MQ=60)
                        TATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTT                                                                      >  SRR4302533.5350071/1‑94 (MQ=60)
                        TATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTT                                                                      <  SRR4302533.5342374/94‑1 (MQ=60)
                         ATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTC                                                                     <  SRR4302533.3850692/94‑1 (MQ=60)
                         ATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTC                                                                     >  SRR4302533.1595203/1‑94 (MQ=60)
                         ATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTC                                                                     <  SRR4302533.6026640/94‑1 (MQ=60)
                          TTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCG                                                                    <  SRR4302533.163111/94‑1 (MQ=60)
                          TTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCG                                                                    <  SRR4302533.630103/94‑1 (MQ=60)
                              TGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGT                                                                >  SRR4302533.4107256/1‑94 (MQ=60)
                              TGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGT                                                                <  SRR4302533.655895/94‑1 (MQ=60)
                                GCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTT                                                              <  SRR4302533.961503/94‑1 (MQ=60)
                                  CTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTAT                                                            >  SRR4302533.22726/1‑94 (MQ=60)
                                  CTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTAT                                                            <  SRR4302533.3351669/94‑1 (MQ=60)
                                  CTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTAT                                                            >  SRR4302533.2267589/1‑94 (MQ=60)
                                  CTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTAT                                                            <  SRR4302533.4997859/94‑1 (MQ=60)
                                  CTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTAT                                                            >  SRR4302533.2167335/1‑94 (MQ=60)
                                   TATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATG                                                           >  SRR4302533.1446956/1‑94 (MQ=60)
                                   TATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATG                                                           >  SRR4302533.1977960/1‑94 (MQ=60)
                                    ATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGC                                                          >  SRR4302533.2533991/1‑94 (MQ=60)
                                    ATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGC                                                          >  SRR4302533.2661641/1‑94 (MQ=60)
                                     TATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCG                                                         <  SRR4302533.4378319/94‑1 (MQ=60)
                                     TATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCG                                                         <  SRR4302533.4831760/94‑1 (MQ=60)
                                      ATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGC                                                        >  SRR4302533.3779166/1‑94 (MQ=60)
                                      ATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGC                                                        >  SRR4302533.4655583/1‑94 (MQ=60)
                                       TCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCA                                                       <  SRR4302533.2704096/94‑1 (MQ=60)
                                         ATCGCCGGGCTGTTCGTCTTGTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATC                                                     <  SRR4302533.5306061/94‑1 (MQ=60)
                                           CGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGT                                                   <  SRR4302533.6090353/94‑1 (MQ=60)
                                           CGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGT                                                   >  SRR4302533.5394777/1‑94 (MQ=60)
                                            GCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTT                                                  >  SRR4302533.1567892/1‑94 (MQ=60)
                                            GCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTT                                                  <  SRR4302533.2445677/94‑1 (MQ=60)
                                             CCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTA                                                 >  SRR4302533.6133806/1‑94 (MQ=60)
                                              CGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTAT                                                <  SRR4302533.1754805/94‑1 (MQ=60)
                                              CGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTAT                                                <  SRR4302533.1201784/94‑1 (MQ=60)
                                              CGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGCTACCGGTTCGGTCGCCGTTTATGCGCATCGTTAT                                                >  SRR4302533.5524247/1‑94 (MQ=60)
                                               GGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATA                                               <  SRR4302533.5228035/94‑1 (MQ=60)
                                               GGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATA                                               >  SRR4302533.1682240/1‑94 (MQ=60)
                                               GGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATA                                               >  SRR4302533.2766118/1‑94 (MQ=60)
                                                 GCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATG                                             <  SRR4302533.2361090/94‑1 (MQ=60)
                                                  CTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGA                                            <  SRR4302533.4169605/94‑1 (MQ=60)
                                                  CTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGA                                            >  SRR4302533.2044835/1‑94 (MQ=60)
                                                   TGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTTGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAG                                           <  SRR4302533.2753130/94‑1 (MQ=60)
                                                   TGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAG                                           >  SRR4302533.2355799/1‑94 (MQ=60)
                                                   TGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAG                                           >  SRR4302533.63870/1‑94 (MQ=60)
                                                   TGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAG                                           >  SRR4302533.3556701/1‑94 (MQ=60)
                                                   TGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGCTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAG                                           >  SRR4302533.4796324/1‑94 (MQ=60)
                                                   CGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAG                                           <  SRR4302533.6061461/94‑1 (MQ=60)
                                                    GTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGC                                          >  SRR4302533.1148084/1‑94 (MQ=60)
                                                    GTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGC                                          >  SRR4302533.5254919/1‑94 (MQ=60)
                                                    GTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGC                                          <  SRR4302533.3958779/94‑1 (MQ=60)
                                                     TTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCC                                         >  SRR4302533.4135381/1‑94 (MQ=60)
                                                     TTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCC                                         >  SRR4302533.2003430/1‑94 (MQ=60)
                                                     TTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCC                                         <  SRR4302533.4217330/94‑1 (MQ=60)
                                                     TTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGCTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCC                                         >  SRR4302533.2625748/1‑94 (MQ=60)
                                                      TCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCC                                        >  SRR4302533.5375853/1‑94 (MQ=60)
                                                       CGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCG                                       <  SRR4302533.2186181/94‑1 (MQ=60)
                                                        GTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGT                                      >  SRR4302533.1744184/1‑94 (MQ=60)
                                                        GTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGT                                      >  SRR4302533.3437375/1‑94 (MQ=60)
                                                        GTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGT                                      >  SRR4302533.5990262/1‑94 (MQ=60)
                                                        GTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGT                                      <  SRR4302533.4739710/94‑1 (MQ=60)
                                                         TCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTT                                     <  SRR4302533.1529667/94‑1 (MQ=60)
                                                         TCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTT                                     >  SRR4302533.5445295/1‑94 (MQ=60)
                                                         TCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTT                                     <  SRR4302533.4444701/94‑1 (MQ=60)
                                                          CTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTC                                    <  SRR4302533.4234951/94‑1 (MQ=60)
                                                          CTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTC                                    >  SRR4302533.5305277/1‑94 (MQ=60)
                                                           TTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCT                                   >  SRR4302533.1656981/1‑94 (MQ=60)
                                                           TTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCT                                   >  SRR4302533.4684062/1‑94 (MQ=60)
                                                            TTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTGCCGGTTAGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTT                                  <  SRR4302533.1549551/94‑1 (MQ=60)
                                                            TTTTCATCATGCGTTCAATGGGCGAAATGTTGTGCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTT                                  <  SRR4302533.3955097/94‑1 (MQ=60)
                                                             TTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTT                                 >  SRR4302533.4785654/1‑94 (MQ=60)
                                                             TTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTT                                 >  SRR4302533.1440605/1‑94 (MQ=60)
                                                              TTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGGCCGTTCTTTG                                >  SRR4302533.1899649/1‑94 (MQ=60)
                                                              TTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTG                                >  SRR4302533.2135108/1‑94 (MQ=60)
                                                              TTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTG                                <  SRR4302533.3610251/94‑1 (MQ=60)
                                                              TTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTG                                <  SRR4302533.4215189/94‑1 (MQ=60)
                                                              TTCATCATGCGTTCAATGGGCGAAATGTTGTCCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTG                                <  SRR4302533.1159788/94‑1 (MQ=60)
                                                              TGCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTG                                <  SRR4302533.6304290/94‑1 (MQ=60)
                                                               TCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGACCGTTCTTTGG                               >  SRR4302533.4887302/1‑94 (MQ=60)
                                                                CATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGC                              >  SRR4302533.685855/1‑94 (MQ=60)
                                                                CATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGC                              >  SRR4302533.3250508/1‑94 (MQ=60)
                                                                 ATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCT                             <  SRR4302533.4549720/94‑1 (MQ=60)
                                                                 ATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCT                             <  SRR4302533.6113933/94‑1 (MQ=60)
                                                                   CATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTAT                           <  SRR4302533.5641998/94‑1 (MQ=60)
                                                                   CATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGGTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTAT                           >  SRR4302533.932285/1‑94 (MQ=60)
                                                                    ATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATC                          <  SRR4302533.5315887/94‑1 (MQ=60)
                                                                    ATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATC                          >  SRR4302533.5502342/1‑94 (MQ=60)
                                                                     TGCGTTCAATGTGCGAAATGTTGTTCCTCGAGCCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCT                         <  SRR4302533.6262871/94‑1 (MQ=60)
                                                                     TGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCT                         <  SRR4302533.2489241/94‑1 (MQ=60)
                                                                       CGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCA                       >  SRR4302533.2891541/1‑94 (MQ=60)
                                                                       CGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGGTCGTTCGCCGTTTATGCGCATCGTTATCTGCGCCCGTTCTTTGGCTATCTCC                       >  SRR4302533.2385980/1‑94 (MQ=60)
                                                                        GTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCAC                      <  SRR4302533.344518/94‑1 (MQ=60)
                                                                        GTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCAC                      <  SRR4302533.4870953/94‑1 (MQ=60)
                                                                        GTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCAC                      >  SRR4302533.2410210/1‑94 (MQ=60)
                                                                         TTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACC                     <  SRR4302533.4860061/94‑1 (MQ=60)
                                                                          TCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCG                    >  SRR4302533.5995640/1‑94 (MQ=60)
                                                                           CAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGC                   >  SRR4302533.4039835/1‑94 (MQ=60)
                                                                             ATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCT                 >  SRR4302533.6255064/1‑94 (MQ=60)
                                                                             ATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCT                 <  SRR4302533.5162707/94‑1 (MQ=60)
                                                                              TGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCTG                <  SRR4302533.1997162/94‑1 (MQ=60)
                                                                               GGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCTGG               <  SRR4302533.3437783/94‑1 (MQ=60)
                                                                                GGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCTGGT              <  SRR4302533.5216364/94‑1 (MQ=60)
                                                                                GGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCTGGT              <  SRR4302533.6070415/94‑1 (MQ=60)
                                                                                  CGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCTGGTCT            <  SRR4302533.666120/94‑1 (MQ=60)
                                                                                  CGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGGTCTTTGGCTATCTCACCGCCTGGTCT            >  SRR4302533.6185408/1‑94 (MQ=60)
                                                                                  CGAAATGTTGTTCCTCGAACCGGTTACCGGGTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGATCTTTGGCTATCTCACCGCCTGGTCT            >  SRR4302533.820268/1‑94 (MQ=60)
                                                                                     AATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCTGGTCTTAC         >  SRR4302533.4005109/1‑94 (MQ=60)
                                                                                     AATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCTGGTCTTAC         >  SRR4302533.1199035/1‑94 (MQ=60)
                                                                                      ATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCTGGTCTTACT        >  SRR4302533.6175776/1‑94 (MQ=60)
                                                                                      ATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCTGGTCTTACT        >  SRR4302533.946317/1‑94 (MQ=60)
                                                                                       TGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCCGGTCTTACTG       >  SRR4302533.2295474/1‑94 (MQ=60)
                                                                                         TTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCTGGTCTTACTGGT     >  SRR4302533.1729438/1‑94 (MQ=60)
                                                                                          TGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCTGGTCTTACTGGTT    >  SRR4302533.3928234/1‑94 (MQ=60)
                                                                                          TGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCTGGTCTTACTGGTT    <  SRR4302533.2701013/94‑1 (MQ=60)
                                                                                            TTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCTGGTCTTACTGGTTTA  <  SRR4302533.5602702/94‑1 (MQ=60)
                                                                                             |                                                                                            
CCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTCCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCACCGCCTGGTCTTACTGGTTTA  >  NC_000913/3978609‑3978794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑