Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,980,297 |
(C)8→9 |
noncoding (79/87 nt) |
leuT → |
tRNA‑Leu |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,980,289 | 1 | . | C | 92.6%
| 424.8
/ 27.0
| 150 | noncoding (71/87 nt) | leuT | tRNA‑Leu |
| Reads supporting (aligned to +/- strand): ref base . (2/9); new base C (39/99); total (42/108) |
| Fisher's exact test for biased strand distribution p-value = 7.28e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 |
Only 100 of 189 total aligned reads displayed.
CATTATTAGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑T‑CCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAAC > NC_000913/3980197‑3980376
|
cATTATTAGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑t < 2:4012867/93‑1 (MQ=255)
ttattaGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑T‑cc > 2:592701/1‑93 (MQ=255)
tattaGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑T‑ccc > 2:764832/1‑93 (MQ=255)
tattaGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGATTCAA‑G‑T‑ccc > 1:4192244/1‑93 (MQ=255)
attaGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑T‑ccc‑c > 2:3855494/1‑93 (MQ=255)
attaGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAA‑G‑T‑ccc‑c > 1:2276502/1‑93 (MQ=255)
taGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑T‑ccc‑ccc < 1:2623366/93‑1 (MQ=255)
aGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑T‑ccc‑cccc > 1:1687572/1‑93 (MQ=255)
gAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑T‑ccc‑ccccc > 1:2480416/1‑93 (MQ=255)
aaGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑T‑ccc‑cccccc < 1:4545163/93‑2 (MQ=255)
aaGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑T‑ccc‑cccccc > 1:2950558/1‑92 (MQ=255)
aGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑T‑ccc‑cccccct < 1:1222921/93‑3 (MQ=255)
aGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAA‑G‑T‑ccc‑cccccct > 2:362508/1‑91 (MQ=255)
gTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑T‑ccc‑cccccctc > 1:2380633/1‑90 (MQ=255)
cAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGcaccac < 2:4350056/93‑1 (MQ=16)
aaTGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACg < 1:6049559/93‑1 (MQ=16)
aaTGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACg < 2:6136281/93‑1 (MQ=16)
aTGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGa > 2:1851403/1‑93 (MQ=16)
aTGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑T‑CCC‑CCCCCTCGCACCACGAc < 2:1289233/93‑1 (MQ=34)
tGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGAc < 1:3443209/93‑1 (MQ=255)
tGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGAc < 2:1956893/93‑1 (MQ=255)
aaGGTGCCGGAATTGGTAGACGTTCTAGCTTCAGGTGTTAGTGTCTTTACGGACGTGCGGATTCAA‑GAC‑CCC‑CCCCCTCGCACCACGACTTTa < 2:3130106/93‑1 (MQ=14)
aGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTaa < 2:5351298/93‑1 (MQ=255)
aGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTaa < 1:1640115/93‑1 (MQ=255)
aGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAA‑G‑TCCCC‑CCCCCTCGCCCCACGACtttta > 2:3503613/1‑91 (MQ=14)
ggcggCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTaaa > 1:2167298/4‑93 (MQ=255)
ggTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTaaa < 1:2713549/93‑1 (MQ=255)
gTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAg < 2:2728476/93‑1 (MQ=255)
ggCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGaa < 1:5947777/93‑1 (MQ=255)
ggCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGaa < 2:4492429/93‑1 (MQ=255)
ggCCGAATTGGTAGGCGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGaa < 2:1506000/93‑1 (MQ=14)
gCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAAt < 1:6291319/93‑1 (MQ=255)
cGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAAtt > 1:4800424/1‑93 (MQ=255)
gAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGTGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGa < 2:4112847/93‑1 (MQ=255)
gAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGa < 1:763991/93‑1 (MQ=255)
gAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGa < 1:4895025/93‑1 (MQ=255)
aTTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAAc < 2:1068291/93‑1 (MQ=255)
tGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTa < 1:1106716/93‑1 (MQ=255)
ggTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTaa < 2:5825736/93‑1 (MQ=255)
gTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTaaa < 2:5205331/93‑1 (MQ=255)
gTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTaaa > 1:5072607/1‑93 (MQ=255)
gTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAA‑G‑TCCCC‑CCCCCTCGCACCACCACTTTAAAAAATTTAACTaaa > 1:4917353/1‑93 (MQ=17)
tAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑GCC‑CCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTaaaa < 2:5956303/93‑1 (MQ=255)
tAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTaaaa < 2:3229269/93‑1 (MQ=255)
tAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTaaaa < 2:4932198/93‑1 (MQ=255)
aGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCGA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTaaaaa < 1:390561/93‑1 (MQ=255)
aGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTaaaaa < 1:651769/93‑1 (MQ=255)
aGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTaaaaa < 1:1471731/93‑1 (MQ=255)
gACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAAt > 1:4851818/1‑93 (MQ=255)
gACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAAt < 1:616767/93‑1 (MQ=255)
gcgcTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑T‑CCCTCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCa < 1:4429262/93‑1 (MQ=255)
cgcTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCaa < 1:533951/93‑1 (MQ=255)
cgcTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCaa < 1:4341205/93‑1 (MQ=255)
cgcTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCaa < 1:790285/93‑1 (MQ=255)
gcTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCaaa > 1:5935943/1‑93 (MQ=255)
cTAGCTTCAGGTGTTAGTGTCCTTCCGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCaaaa < 1:1256077/93‑1 (MQ=255)
cTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCaaaa < 1:1526348/93‑1 (MQ=255)
cTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCaaaa > 1:1819976/1‑93 (MQ=255)
cTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑T‑CCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCaaaaa < 2:1967809/93‑1 (MQ=255)
tAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCaaaaa < 2:2602720/93‑1 (MQ=255)
gcatCAGGTTTTAGTGTCCTTACGTACGTGGGGTTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGc < 2:6233320/90‑1 (MQ=25)
gCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGc < 2:1651764/93‑1 (MQ=255)
gCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGc > 1:5954861/1‑93 (MQ=255)
cTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCa < 2:1340022/93‑1 (MQ=255)
cTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCa < 2:2768927/93‑1 (MQ=255)
tCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTTAAGAATTGAACTAAAAATTCAAAAAGCAGt > 2:2422518/1‑93 (MQ=25)
aGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTAt > 2:4168629/1‑93 (MQ=255)
ggTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTAtt < 2:1426974/93‑1 (MQ=255)
ggTGTTAGTGTCCTTACGGACGTGGGGGGTCAA‑G‑TCCCC‑CCCCCTCGCCCCACGACTTTTAAGAATTGAACTAAAAAATTAAAAAGCAGTAtt > 1:3556705/1‑93 (MQ=21)
gtgtTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTAttt < 1:3216528/93‑1 (MQ=255)
gtTAGTGTCCTTACGGACGTGGGGGTTCAA‑GCC‑CCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCg < 2:4709147/93‑1 (MQ=255)
gtTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCg > 2:6092432/1‑93 (MQ=255)
gtTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCg < 1:3947065/93‑1 (MQ=255)
gtTAGTGTCCTTACGGACGTGGGGGGTCAA‑G‑TCCCC‑CCCCCCCCCCCCCCGCCTTTAAAAAATTAAACTAAAAAATCAAAAAAAAGAAtttgg > 2:4570010/1‑91 (MQ=9)
ttAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCgg < 1:912614/93‑1 (MQ=255)
ttAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCgg < 1:2775744/93‑1 (MQ=255)
ttAGTGGCCTTACGGACGTGGGGTTGCAA‑T‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCgg < 1:2680511/93‑1 (MQ=37)
tAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGc < 2:738375/93‑1 (MQ=255)
aGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCg > 1:2084542/1‑93 (MQ=255)
gtgtCCTTACGGACGTGGGGCTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGa < 2:2837597/93‑1 (MQ=255)
tgtCCTTACGGACGTGGGGGTTCAA‑GCC‑CCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAg < 1:1439195/93‑1 (MQ=255)
ccTTACGGACGTGGGGGTTCAAGG‑C‑CCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAg < 2:846400/93‑1 (MQ=255)
ccTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAg > 1:4046791/1‑93 (MQ=255)
cTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAgc < 2:3133473/93‑1 (MQ=255)
cTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAgc > 1:884855/1‑93 (MQ=255)
cTTACGGACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAgc < 1:5471203/93‑1 (MQ=255)
ttACGGACGTGGGGGGTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCCGCGAGTAgcg > 2:3742174/1‑93 (MQ=38)
aCGGACGTGTGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCa < 2:6197667/93‑1 (MQ=255)
ggACGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGc < 1:3467012/93‑1 (MQ=255)
aCGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCtt < 2:5507563/93‑1 (MQ=255)
aCGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCtt < 1:524954/93‑1 (MQ=255)
cGTGGGGGTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTg < 2:2380633/93‑1 (MQ=255)
gggggTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTa < 1:1762971/93‑1 (MQ=255)
gggggTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTa < 1:3093702/93‑1 (MQ=255)
gggggTTCAA‑G‑T‑CCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAg > 1:1077670/1‑93 (MQ=255)
ggggTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAg > 1:4215889/1‑93 (MQ=255)
gggTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAgc < 1:2613833/93‑1 (MQ=255)
gTTCAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAgcgc > 1:5869982/1‑93 (MQ=255)
gTTCAA‑G‑TACCC‑CCCCCTCGCACCACGACTTTTAAGAATTTAACTAAAAAATCAAAAAACAGTATTTCCGCGAGGAGCGCAGCATGGGAgcgc > 2:2201633/1‑93 (MQ=255)
cAA‑G‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAAc < 1:3845063/93‑1 (MQ=255)
|
CATTATTAGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑T‑CCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAAC > NC_000913/3980197‑3980376
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑T‑CCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAG > NC_000913/3980204‑3980390
|
AGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑T‑CCC‑CCCCC > SRR4302533.2495712/1‑94 (MQ=34)
AGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑T‑CCA‑CCCCC > SRR4302533.2566840/1‑94 (MQ=33)
GAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑T‑CCC‑CCCCCC > SRR4302533.2968599/1‑94 (MQ=31)
AAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑T‑CCC‑CCCCCct < SRR4302533.4572689/94‑3 (MQ=29)
AGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑T‑CCC‑CCCCCctc < SRR4302533.1230255/94‑4 (MQ=27)
AGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑T‑CCC‑CCCCCctc > SRR4302533.2395358/1‑91 (MQ=27)
TTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGCGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGC > SRR4302533.2163935/1‑94 (MQ=19)
TGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAAG‑T‑CCC‑CCCCCctcccacc > SRR4302533.2215753/1‑86 (MQ=8)
ACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCAC < SRR4302533.2287565/94‑1 (MQ=5)
CAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACG < SRR4302533.3536550/94‑1 (MQ=5)
AATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGA < SRR4302533.6086209/94‑1 (MQ=5)
ATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑T‑CCC‑CCCCCTCGCACCACGACT < SRR4302533.4392667/94‑1 (MQ=8)
TGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACT < SRR4302533.3958823/94‑1 (MQ=7)
TGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACT < SRR4302533.3464477/94‑1 (MQ=7)
GAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTA > SRR4302533.4922889/1‑94 (MQ=20)
ACGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAA < SRR4302533.3104569/94‑1 (MQ=22)
AGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAA < SRR4302533.1650050/94‑1 (MQ=25)
AGGCGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAA > SRR4302533.2180627/1‑94 (MQ=24)
GGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAG < SRR4302533.2730212/94‑1 (MQ=27)
GGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAAT < SRR4302533.5983752/94‑1 (MQ=34)
GCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATT > SRR4302533.4829501/1‑94 (MQ=37)
GCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATT < SRR4302533.6328834/94‑1 (MQ=37)
GGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGA > SRR4302533.2672758/1‑94 (MQ=42)
GGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGA < SRR4302533.6056097/94‑1 (MQ=42)
GAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAA < SRR4302533.768492/94‑1 (MQ=44)
GAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAA < SRR4302533.4924691/94‑1 (MQ=44)
GAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTTAAGAATTTAA > SRR4302533.2383404/1‑94 (MQ=22)
GAATTGGTAGACGCGCTACCTTCGGGTGTTAGTGTCCTTACGGCCGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAA < SRR4302533.6222288/94‑1 (MQ=39)
AATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAAC > SRR4302533.1388897/1‑94 (MQ=47)
AATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAAC < SRR4302533.5329402/94‑1 (MQ=47)
ATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACT > SRR4302533.830760/1‑94 (MQ=49)
ATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACT < SRR4302533.263128/94‑1 (MQ=49)
TTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTA > SRR4302533.2817838/1‑94 (MQ=51)
TGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAA < SRR4302533.1113279/94‑1 (MQ=54)
GGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAA < SRR4302533.4328171/94‑1 (MQ=56)
GGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAA > SRR4302533.5103267/1‑94 (MQ=56)
GGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAAG‑TCCCC‑CCCCCTCGCACCACCACTTTAAAAAATTTAACTAAA > SRR4302533.4947135/1‑94 (MQ=16)
AGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCGAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAAT < SRR4302533.392922/94‑1 (MQ=60)
AGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAAT < SRR4302533.5412551/94‑1 (MQ=60)
AGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAAT > SRR4302533.4881220/1‑94 (MQ=60)
AGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAAT < SRR4302533.1480627/94‑1 (MQ=60)
AGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAAT < SRR4302533.655619/94‑1 (MQ=60)
GACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATT < SRR4302533.620386/94‑1 (MQ=60)
ACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAAG‑T‑CCC‑CCCCCcccccccccccaccttttaaaaattaaataaaaaaat > SRR4302533.3305164/1‑57 (MQ=0)
GCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑T‑CCCTCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAA < SRR4302533.4456037/94‑1 (MQ=60)
CGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAA > SRR4302533.6202478/1‑94 (MQ=60)
CGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAA < SRR4302533.4367369/94‑1 (MQ=60)
CGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAA < SRR4302533.537129/94‑1 (MQ=60)
CGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAA < SRR4302533.794938/94‑1 (MQ=60)
CGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAA > SRR4302533.5971830/1‑94 (MQ=60)
CGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAA > SRR4302533.4241209/1‑94 (MQ=60)
GCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAA > SRR4302533.1831092/1‑94 (MQ=60)
CTAGCTTCAGGTGTTAGTGTCCTTCCGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAA < SRR4302533.1263586/94‑1 (MQ=60)
CTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAA < SRR4302533.1535538/94‑1 (MQ=60)
AGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGC > SRR4302533.5990882/1‑94 (MQ=60)
GCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCA < SRR4302533.3156067/94‑1 (MQ=60)
CTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCCCGACTTTAAAAAATTGAACTAAAAATTCAAAAAGAAG > SRR4302533.1458129/1‑94 (MQ=55)
TTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGT < SRR4302533.780542/94‑1 (MQ=60)
AGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATT < SRR4302533.2400125/94‑1 (MQ=60)
AGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAAG‑TCCCC‑CCCCCTCGCCCCACGACTTTTAAGAATTGAACTAAAAAATTAAAAAGCAGTATT > SRR4302533.3578625/1‑94 (MQ=43)
GGTGTTAGTGTCCTTACGGACGTGGGGGGTCTAG‑T‑CCC‑CCCCCTCccgccaatttttttttcctccttttttttttttttctttattttttttc > SRR4302533.5547535/1‑45 (MQ=0)
GTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTC < SRR4302533.3236360/94‑1 (MQ=60)
TGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCG < SRR4302533.1236807/94‑1 (MQ=60)
GTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGG < SRR4302533.3971136/94‑1 (MQ=60)
TTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGC < SRR4302533.917967/94‑1 (MQ=60)
TTAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGC < SRR4302533.2792791/94‑1 (MQ=60)
TTAGTGGCCTTACGGACGTGGGGTTGCAAT‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGC < SRR4302533.2696936/94‑1 (MQ=60)
TAGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCG > SRR4302533.2097377/1‑94 (MQ=60)
AGTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGA > SRR4302533.3700338/1‑94 (MQ=60)
GTGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAAATAAAAATTCAAAAAACAGTATTTCGGCGAG > SRR4302533.4574417/1‑94 (MQ=60)
TGTCCTTACGGACGTGGGGGTTCAAGCC‑CCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGT < SRR4302533.1447881/94‑1 (MQ=60)
TGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGT < SRR4302533.1519157/94‑1 (MQ=60)
TGTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGT < SRR4302533.2767419/94‑1 (MQ=60)
GTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTA > SRR4302533.412365/1‑94 (MQ=60)
GTCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTA < SRR4302533.1205775/94‑1 (MQ=60)
TCCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAG > SRR4302533.4071425/1‑94 (MQ=60)
CCTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGC > SRR4302533.890054/1‑94 (MQ=60)
CTTACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCG < SRR4302533.5504174/94‑1 (MQ=60)
CTTACGGACGTGGGGGTTCAAG‑TACCC‑CCCCCTCGCACCACGACCTTAAAGAATTGAACTAAAAATTCAAAAAGGAGAATTTCGGCGAGTAGAG > SRR4302533.1460574/1‑94 (MQ=60)
ACGGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAG < SRR4302533.348783/94‑1 (MQ=60)
GGACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCT < SRR4302533.3488410/94‑1 (MQ=60)
gccgtggggtttcaggccCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTT < SRR4302533.4540066/76‑1 (MQ=60)
ACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTG < SRR4302533.715545/94‑1 (MQ=60)
ACGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTG < SRR4302533.528064/94‑1 (MQ=60)
CGTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGG < SRR4302533.4069458/94‑1 (MQ=60)
GTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGT < SRR4302533.5936544/94‑1 (MQ=60)
GTGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGT < SRR4302533.648003/94‑1 (MQ=60)
TGGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTA > SRR4302533.1580802/1‑94 (MQ=60)
TGGGGGTTCAAG‑T‑CCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAG > SRR4302533.1084023/1‑94 (MQ=60)
GGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAG < SRR4302533.3112723/94‑1 (MQ=60)
GGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAG > SRR4302533.4241392/1‑94 (MQ=60)
GGGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAG < SRR4302533.1773709/94‑1 (MQ=60)
GGGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGC < SRR4302533.3419457/94‑1 (MQ=60)
GGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCG < SRR4302533.2629877/94‑1 (MQ=60)
GGGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGAG < SRR4302533.5038046/94‑1 (MQ=60)
GGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGC < SRR4302533.2128272/94‑1 (MQ=60)
GGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGC > SRR4302533.4926172/1‑94 (MQ=60)
GGTTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGC > SRR4302533.5905462/1‑94 (MQ=60)
TTCAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAA < SRR4302533.1680831/94‑1 (MQ=60)
CAAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACT < SRR4302533.3868547/94‑1 (MQ=60)
AAG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTG < SRR4302533.3240772/94‑1 (MQ=60)
AG‑TCCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGG < SRR4302533.3525211/94‑1 (MQ=60)
tcCCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTT < SRR4302533.613232/92‑1 (MQ=60)
C‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGG < SRR4302533.1125180/94‑1 (MQ=60)
C‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGG > SRR4302533.4211559/1‑94 (MQ=60)
CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGC > SRR4302533.4811961/1‑94 (MQ=60)
CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGAC < SRR4302533.4486772/94‑1 (MQ=60)
CTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAG > SRR4302533.1289324/1‑94 (MQ=60)
|
AGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑T‑CCC‑CCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAG > NC_000913/3980204‑3980390
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
