Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,074,827	A→G	Q78R (CAG→CGG)	yihZ →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,074,827	0	A	G	100.0%	721.7 / NA	226	Q78R (CAG→CGG)	yihZ	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (100/126); total (100/126)

Only 100 of 240 total aligned reads displayed.

GTGTGCTCGGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCAGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATATGACT  >  NC_000913/4074737‑4074916

 tgtgCTCGGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGtt                                                                                        <  2:4641464/93‑1 (MQ=255)

  gtgCTCGGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGttt                                                                                       <  1:4138943/93‑1 (MQ=255)

   tgCTCGGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTa                                                                                      >  1:5388394/1‑93 (MQ=255)

     cTCGGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTAcc                                                                                    <  2:494736/93‑1 (MQ=255)

     cTCGGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTAcc                                                                                    >  2:3104592/1‑93 (MQ=255)

      tCGGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTAccc                                                                                   <  2:1677824/93‑1 (MQ=255)

      gcGGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTAccc                                                                                   <  2:3255924/92‑1 (MQ=255)

       cgtcTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTTGTGGTTTCCCGGTTTACCCt                                                                                  <  2:1840937/90‑1 (MQ=255)

       cGGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCt                                                                                  <  2:3704297/93‑1 (MQ=255)

       cGGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCt                                                                                  <  2:3288119/93‑1 (MQ=255)

       cGGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCt                                                                                  <  2:1094312/93‑1 (MQ=255)

        ggCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTc                                                                                 >  2:665344/1‑93 (MQ=255)

          cTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTcgc                                                                               <  2:5458133/93‑1 (MQ=255)

          cTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTcgc                                                                               <  1:2787363/93‑1 (MQ=255)

            aCCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGCGTGCTGGTGGTTTCCCGGTTTACCCTcgccc                                                                             >  1:5754221/1‑92 (MQ=255)

             ccGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTcgccgc                                                                            >  2:148185/1‑93 (MQ=255)

             ccGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTcgccgc                                                                            <  1:4407968/93‑1 (MQ=255)

             ccGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTcgccgc                                                                            >  1:931535/1‑93 (MQ=255)

              cGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCa                                                                           >  1:2535187/1‑93 (MQ=255)

                cATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGa                                                                         >  2:2206570/1‑93 (MQ=255)

                  tCTTTAGCGTTGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATa                                                                       >  2:1281675/1‑93 (MQ=255)

                  tCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATa                                                                       >  2:4484392/1‑93 (MQ=255)

                   cTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATAc                                                                      <  2:4659745/93‑1 (MQ=255)

                    tttAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATAcc                                                                     <  1:82186/93‑1 (MQ=255)

                     ttAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCg                                                                    >  1:4762038/1‑93 (MQ=255)

                       aGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGaa                                                                  <  1:2154197/93‑1 (MQ=255)

                          gATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACgg                                                               <  1:643989/93‑1 (MQ=255)

                           aTGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACggg                                                              <  1:2677834/93‑1 (MQ=255)

                           aTGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACggg                                                              >  2:5970302/1‑93 (MQ=255)

                            tGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACgggg                                                             <  1:950625/93‑1 (MQ=255)

                            tGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACgggg                                                             >  2:2110293/1‑93 (MQ=255)

                            tGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACgggg                                                             >  1:2484936/1‑93 (MQ=255)

                            tGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACgggg                                                             <  1:1881826/93‑1 (MQ=255)

                            tGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACgggg                                                             >  2:3970769/1‑93 (MQ=255)

                             gCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACggggg                                                            <  1:5825090/93‑1 (MQ=255)

                              ccGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGa                                                           <  1:2322032/93‑1 (MQ=255)

                              ccGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGa                                                           <  2:1884824/93‑1 (MQ=255)

                               cGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTATCCTCGCCGCAGATACCGAACGGGGGAt                                                          >  2:2672229/1‑93 (MQ=255)

                                gAAGGCAAGATGAATCTCACCGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATg                                                         >  2:6080359/1‑93 (MQ=255)

                                gAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATg                                                         <  1:3851095/93‑1 (MQ=255)

                                 aaGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATgc                                                        <  1:1807596/93‑1 (MQ=255)

                                 aaGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATgc                                                        <  2:4808458/93‑1 (MQ=255)

                                  aGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGAGgcg                                                       >  1:2880233/1‑93 (MQ=255)

                                   ggCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATgcgc                                                      <  2:2026770/93‑1 (MQ=255)

                                      aaGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCa                                                   >  2:3405197/1‑93 (MQ=255)

                                       aGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCaa                                                  <  2:5255539/93‑1 (MQ=255)

                                        gATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAg                                                 >  1:4262086/1‑93 (MQ=255)

                                          tGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGtt                                               >  1:2264026/1‑93 (MQ=255)

                                          tGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGGGGTTTCCCGGGTTACACTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGtt                                               >  2:2245389/1‑93 (MQ=255)

                                            aaTCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTtc                                             <  1:1192018/93‑1 (MQ=255)

                                            aaTCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTtc                                             >  2:3499970/1‑93 (MQ=255)

                                               ctcAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTcc                                          <  1:2062607/93‑1 (MQ=255)

                                               ctcAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTcc                                          >  2:2932297/1‑93 (MQ=255)

                                                tcAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGCTGCGCCCCAGTTTCTCCa                                         >  2:297336/1‑93 (MQ=255)

                                                tcAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCa                                         <  1:4274975/93‑1 (MQ=255)

                                                   aCGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAg                                      >  1:2432735/1‑93 (MQ=255)

                                                    cGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAgg                                     <  1:4702052/93‑1 (MQ=255)

                                                     gTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGt                                    <  1:1334249/93‑1 (MQ=255)

                                                     gTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGt                                    <  2:3568200/93‑1 (MQ=255)

                                                       gCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGc                                  >  2:5781896/1‑93 (MQ=255)

                                                       gCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGc                                  <  1:4186361/93‑1 (MQ=255)

                                                         aaCAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCAt                                <  2:3674003/93‑1 (MQ=255)

                                                          aCAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATc                               <  1:6195655/93‑1 (MQ=255)

                                                           cAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCa                              >  1:3557503/1‑93 (MQ=255)

                                                            aGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCAc                             <  1:3001789/93‑1 (MQ=255)

                                                            aGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCAc                             >  2:1021399/1‑93 (MQ=255)

                                                             ggcgggcgGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCAcc                            <  2:235382/93‑1 (MQ=255)

                                                             ggcgggcgGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCAcc                            <  1:3247783/93‑1 (MQ=255)

                                                             ggcgggcgGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCAcc                            <  2:4015683/93‑1 (MQ=255)

                                                              gcgggcggCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGCAGCGCCCAAGTTTCTCCAAAGGTGCCTTACCg                           >  1:685206/1‑93 (MQ=255)

                                                              gcgggcggCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCg                           <  2:2415357/93‑1 (MQ=255)

                                                              gcgggcggCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCg                           <  2:6040911/93‑1 (MQ=255)

                                                              gcgggcggCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCg                           >  1:1593844/1‑93 (MQ=255)

                                                                gggcggCAGGGTGCTGGTGGTTTCCCGGTGTACCCTCGCCGCAGATACCGAAGGGGGGATGCGACCAAGTTTCTCCAAAGGTGCATCACCGGa                         <  2:1847580/93‑1 (MQ=255)

                                                                 ggcggcAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGAt                        >  2:4268796/1‑93 (MQ=255)

                                                                 gacagcAGTGTGCTGATGGTTTCCCGGTTTGCCCTCGCCGCAGATACCGAACGGGGGATGCTCCCAAGTTTCTCCAGAGGTGCATCACCGGAt                        <  2:2809391/89‑1 (MQ=255)

                                                                  gcggcAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATc                       <  2:3857044/93‑1 (MQ=255)

                                                                   cggcAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATcg                      <  1:1223565/93‑1 (MQ=255)

                                                                    ggcAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATcgc                     >  1:1550471/1‑93 (MQ=255)

                                                                     gcAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATcgcg                    >  1:1725457/1‑93 (MQ=255)

                                                                       aGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCa                  <  2:5758822/93‑1 (MQ=255)

                                                                       aGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCa                  <  1:3960111/93‑1 (MQ=255)

                                                                         tgtgCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCaga                <  2:6279804/93‑1 (MQ=255)

                                                                         tgtgCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCaga                <  1:5261185/93‑1 (MQ=255)

                                                                          gtgCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCagag               >  1:4968096/1‑93 (MQ=255)

                                                                          gtgCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCagag               <  1:1021756/93‑1 (MQ=255)

                                                                           tgCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAgg              >  2:5336036/1‑93 (MQ=255)

                                                                             cTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCg            <  2:2462398/93‑1 (MQ=255)

                                                                              tggtggTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGt           <  1:3779736/93‑1 (MQ=255)

                                                                              tggtggTTCCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGt           <  2:1354887/93‑1 (MQ=255)

                                                                               ggtggtTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGtt          >  1:4663444/1‑93 (MQ=255)

                                                                                gtggtTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTta         >  2:508545/1‑93 (MQ=255)

                                                                                 tggtTTCCCGGTTTACCCTCGCCGCAGATGCCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTtat        <  1:3460761/93‑1 (MQ=255)

                                                                                 tggtTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTtat        >  1:887356/1‑93 (MQ=255)

                                                                                  ggtTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTtata       <  1:5498441/93‑1 (MQ=255)

                                                                                   gtTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTatat      <  1:1446548/93‑1 (MQ=255)

                                                                                   gtTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTatat      <  1:3104080/93‑1 (MQ=255)

                                                                                   gtTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTatat      <  1:3049097/93‑1 (MQ=255)

                                                                                   gtTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTatat      <  1:4509802/93‑1 (MQ=255)

                                                                                      tCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATATGAc   >  1:5951603/1‑93 (MQ=255)

GTGTGCTCGGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCAGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATATGACT  >  NC_000913/4074737‑4074916

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGCGTGTGCTCGGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCAGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATATGACTATTT  >  NC_000913/4074734‑4074920

AGCGTGTGCTCGGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCG                                                                                               <  SRR4302533.3388453/94‑1 (MQ=60)

 GCGTGTGCTCGGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGG                                                                                              >  SRR4302533.2901836/1‑94 (MQ=60)

   GTGTGCTCGGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTT                                                                                            >  SRR4302533.3723576/1‑94 (MQ=60)

    TGTGCTCGGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTT                                                                                           >  SRR4302533.170417/1‑94 (MQ=60)

     GTGCTCGGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTA                                                                                          >  SRR4302533.5420773/1‑94 (MQ=60)

     GTGCTCGGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTA                                                                                          <  SRR4302533.4164049/94‑1 (MQ=60)

     GTGCTCGGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTA                                                                                          <  SRR4302533.4432747/94‑1 (MQ=60)

      TGCTCGGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTAC                                                                                         <  SRR4302533.1875404/94‑1 (MQ=60)

         TCGGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCT                                                                                      >  SRR4302533.2742470/1‑94 (MQ=60)

         TCGGCTACAGCATCTTTAGCGATGCAGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCT                                                                                      <  SRR4302533.1290659/94‑1 (MQ=60)

          CGGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTC                                                                                     <  SRR4302533.4369567/94‑1 (MQ=60)

          CGGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTC                                                                                     <  SRR4302533.4706583/94‑1 (MQ=60)

          CGGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTC                                                                                     <  SRR4302533.2234160/94‑1 (MQ=60)

           GGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCG                                                                                    <  SRR4302533.4542907/94‑1 (MQ=60)

           GGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCG                                                                                    >  SRR4302533.5257350/1‑94 (MQ=60)

           GGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCG                                                                                    <  SRR4302533.1746204/94‑1 (MQ=60)

            GCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGC                                                                                   >  SRR4302533.1156216/1‑94 (MQ=60)

             CTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCC                                                                                  <  SRR4302533.2804490/94‑1 (MQ=60)

             CTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGCTTCCCGGCTTACCCTCGCC                                                                                  >  SRR4302533.2980771/1‑94 (MQ=60)

              TACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCG                                                                                 >  SRR4302533.5857313/1‑94 (MQ=60)

              TACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCG                                                                                 >  SRR4302533.5578584/1‑94 (MQ=60)

              TACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGCGTGCTGGTGGTTTCCCGGTTTACCCTCGCCC                                                                                 >  SRR4302533.5788940/1‑94 (MQ=60)

               ACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGC                                                                                >  SRR4302533.937003/1‑94 (MQ=60)

                CCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCA                                                                               >  SRR4302533.2550792/1‑94 (MQ=60)

                CCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCA                                                                               <  SRR4302533.4434587/94‑1 (MQ=60)

                 CGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAG                                                                              >  SRR4302533.3191234/1‑94 (MQ=60)

                  GCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGA                                                                             <  SRR4302533.349388/94‑1 (MQ=60)

                   CATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGAT                                                                            <  SRR4302533.898517/94‑1 (MQ=60)

                   CATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGAT                                                                            >  SRR4302533.2808481/1‑94 (MQ=60)

                   CATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGCGCTGGTGGCTTCCCGGTTTACCCTCGCCGCAGAT                                                                            >  SRR4302533.2367515/1‑94 (MQ=60)

                    ATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATA                                                                           <  SRR4302533.630010/94‑1 (MQ=60)

                      CTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACC                                                                         >  SRR4302533.3043975/1‑94 (MQ=60)

                       TTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCG                                                                        <  SRR4302533.82706/94‑1 (MQ=60)

                       TTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCG                                                                        >  SRR4302533.4790923/1‑94 (MQ=60)

                        TTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGA                                                                       <  SRR4302533.308330/94‑1 (MQ=60)

                         TAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAA                                                                      <  SRR4302533.1505962/94‑1 (MQ=60)

                          AGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAAC                                                                     <  SRR4302533.2167463/94‑1 (MQ=60)

                          AGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAAC                                                                     >  SRR4302533.2540448/1‑94 (MQ=60)

                            CGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGG                                                                   <  SRR4302533.821825/94‑1 (MQ=60)

                             GATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGG                                                                  >  SRR4302533.1215742/1‑94 (MQ=60)

                             GATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGG                                                                  <  SRR4302533.647780/94‑1 (MQ=60)

                              ATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGG                                                                 >  SRR4302533.2500248/1‑94 (MQ=60)

                              ATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGG                                                                 <  SRR4302533.2694250/94‑1 (MQ=60)

                               TGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGG                                                                <  SRR4302533.416858/94‑1 (MQ=60)

                               TGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGG                                                                <  SRR4302533.956207/94‑1 (MQ=60)

                               TGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGG                                                                <  SRR4302533.1893283/94‑1 (MQ=60)

                                GCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGA                                                               <  SRR4302533.5860282/94‑1 (MQ=60)

                                 CCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGAT                                                              >  SRR4302533.4182120/1‑94 (MQ=60)

                                 CCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGAT                                                              <  SRR4302533.2336404/94‑1 (MQ=60)

                                  CGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATG                                                             <  SRR4302533.4833036/94‑1 (MQ=60)

                                  CGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATG                                                             <  SRR4302533.3170079/94‑1 (MQ=60)

                                   GAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGC                                                            <  SRR4302533.2771259/94‑1 (MQ=60)

                                   GAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGC                                                            <  SRR4302533.3874610/94‑1 (MQ=60)

                                    AAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCG                                                           <  SRR4302533.1818595/94‑1 (MQ=60)

                                    AAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCG                                                           <  SRR4302533.1478933/94‑1 (MQ=60)

                                    AAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCG                                                           <  SRR4302533.2486948/94‑1 (MQ=60)

                                    AAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGAGGCG                                                           >  SRR4302533.2897953/1‑94 (MQ=60)

                                       GCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCC                                                        <  SRR4302533.2952180/94‑1 (MQ=60)

                                        CAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCA                                                       >  SRR4302533.1994420/1‑94 (MQ=60)

                                         AAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAA                                                      <  SRR4302533.776519/94‑1 (MQ=60)

                                          AGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAG                                                     >  SRR4302533.4287765/1‑94 (MQ=60)

                                            ATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTT                                                   >  SRR4302533.2278036/1‑94 (MQ=60)

                                            ATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTT                                                   >  SRR4302533.1386813/1‑94 (MQ=60)

                                             TGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTT                                                  <  SRR4302533.1572121/94‑1 (MQ=60)

                                              caaccgCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTC                                                 <  SRR4302533.1792017/88‑1 (MQ=60)

                                              GAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTC                                                 <  SRR4302533.2321092/94‑1 (MQ=60)

                                               AATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCT                                                <  SRR4302533.3852450/94‑1 (MQ=60)

                                               AATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCT                                                <  SRR4302533.1199181/94‑1 (MQ=60)

                                                ATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTC                                               >  SRR4302533.4496079/1‑94 (MQ=60)

                                                  CTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCA                                             <  SRR4302533.2075325/94‑1 (MQ=60)

                                                   TCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAA                                            <  SRR4302533.4300692/94‑1 (MQ=60)

                                                   TCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAA                                            >  SRR4302533.5947445/1‑94 (MQ=60)

                                                     AACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAG                                          >  SRR4302533.2447766/1‑94 (MQ=60)

                                                     AACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAG                                          <  SRR4302533.65081/94‑1 (MQ=60)

                                                       CGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGT                                        <  SRR4302533.4730560/94‑1 (MQ=60)

                                                        GTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTG                                       <  SRR4302533.6157744/94‑1 (MQ=60)

                                                        GTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTG                                       <  SRR4302533.1342255/94‑1 (MQ=60)

                                                        GTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGGG                                       >  SRR4302533.3460565/1‑94 (MQ=60)

                                                         TGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGC                                      >  SRR4302533.943634/1‑94 (MQ=60)

                                                          GCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCA                                     <  SRR4302533.1814905/94‑1 (MQ=60)

                                                          GCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCA                                     <  SRR4302533.4211712/94‑1 (MQ=60)

                                                            AACAGGCGGGCGGCAGTGTGCTGGTGGGTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATC                                   >  SRR4302533.6043059/1‑94 (MQ=60)

                                                             ACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCA                                  >  SRR4302533.3579424/1‑94 (MQ=60)

                                                             ACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCA                                  <  SRR4302533.4299523/94‑1 (MQ=60)

                                                             ACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCA                                  <  SRR4302533.6232827/94‑1 (MQ=60)

                                                               AGGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACC                                <  SRR4302533.3020144/94‑1 (MQ=60)

                                                               AGGCGGGCGGCAGTGTGCTGGTGGGTTCCCGGGTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACC                                >  SRR4302533.4946231/1‑94 (MQ=60)

                                                                GGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGCAGCGCCCAAGTTTCTCCAAAGGTGCCTTACCG                               >  SRR4302533.689260/1‑94 (MQ=60)

                                                                GGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCG                               >  SRR4302533.1603488/1‑94 (MQ=60)

                                                                GGCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCG                               <  SRR4302533.3267812/94‑1 (MQ=60)

                                                                 GCGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGG                              <  SRR4302533.3571218/94‑1 (MQ=60)

                                                                  CGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGA                             >  SRR4302533.836337/1‑94 (MQ=60)

                                                                  CGGGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGA                             >  SRR4302533.4780810/1‑94 (MQ=60)

                                                                    GGCGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATC                           <  SRR4302533.5363444/94‑1 (MQ=60)

                                                                      CGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCGAAGGTGCATCACCGGATCGC                         >  SRR4302533.3902373/1‑94 (MQ=60)

                                                                      CGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGC                         >  SRR4302533.1559813/1‑94 (MQ=60)

                                                                      CGGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGC                         <  SRR4302533.1230904/94‑1 (MQ=60)

                                                                       GGCAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCG                        >  SRR4302533.1735927/1‑94 (MQ=60)

                                                                         CAGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCA                      >  SRR4302533.454296/1‑94 (MQ=60)

                                                                          AGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCGAAAGGTGTATCACCGGATCGCGCAG                     <  SRR4302533.2638573/94‑1 (MQ=60)

                                                                          AGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAG                     <  SRR4302533.4274082/94‑1 (MQ=60)

                                                                          AGTGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAG                     <  SRR4302533.3984241/94‑1 (MQ=60)

                                                                            TGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTGCAAAGGTGCATCACCGGATCGCGCAGAG                   >  SRR4302533.5383989/1‑94 (MQ=60)

                                                                            TGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAG                   >  SRR4302533.4998218/1‑94 (MQ=60)

                                                                            TGTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAG                   <  SRR4302533.5292771/94‑1 (MQ=60)

                                                                             GTGCTGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGG                  <  SRR4302533.1027758/94‑1 (MQ=60)

                                                                                 TGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTT              <  SRR4302533.3802890/94‑1 (MQ=60)

                                                                                 TGGTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTT              >  SRR4302533.4691701/1‑94 (MQ=60)

                                                                                   GTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTAT            >  SRR4302533.892565/1‑94 (MQ=60)

                                                                                   GTGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTAT            <  SRR4302533.4143053/94‑1 (MQ=60)

                                                                                    TGGTTTCCCGGTTTACCCTCGCCGCAGATGCCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATA           <  SRR4302533.3482123/94‑1 (MQ=60)

                                                                                    TGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATA           <  SRR4302533.5512276/94‑1 (MQ=60)

                                                                                    TGGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATA           >  SRR4302533.2492659/1‑94 (MQ=60)

                                                                                    TGG‑TTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATAT          <  SRR4302533.2014344/94‑1 (MQ=60)

                                                                                     GGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATAT          <  SRR4302533.5789727/94‑1 (MQ=60)

                                                                                     GGTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATAT          <  SRR4302533.5531606/94‑1 (MQ=60)

                                                                                      GTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATATG         <  SRR4302533.4537114/94‑1 (MQ=60)

                                                                                      GTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATATG         <  SRR4302533.1455275/94‑1 (MQ=60)

                                                                                      GTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATATG         <  SRR4302533.927762/94‑1 (MQ=60)

                                                                                      GTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATATG         <  SRR4302533.3123163/94‑1 (MQ=60)

                                                                                      GTTTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATATG         <  SRR4302533.3067761/94‑1 (MQ=60)

                                                                                        TTCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATATGAC       >  SRR4302533.5987602/1‑94 (MQ=60)

                                                                                         TCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATATGACT      <  SRR4302533.1239046/94‑1 (MQ=60)

                                                                                         TCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATATGACT      >  SRR4302533.2297530/1‑94 (MQ=60)

                                                                                         TCCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATATGACT      >  SRR4302533.2164176/1‑94 (MQ=60)

                                                                                          CCCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATATGACTA     <  SRR4302533.3922794/94‑1 (MQ=60)

                                                                                           CCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATATGACTAT    <  SRR4302533.497308/94‑1 (MQ=60)

                                                                                           CCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATATGACTAT    <  SRR4302533.1090946/94‑1 (MQ=60)

                                                                                           CCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATATGACTAT    >  SRR4302533.2236666/1‑94 (MQ=60)

                                                                                           CCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATATGACTAT    <  SRR4302533.4495219/94‑1 (MQ=60)

                                                                                           CCGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATATGACTAT    <  SRR4302533.4597531/94‑1 (MQ=60)

                                                                                            CGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATATGACTATT   >  SRR4302533.3921825/1‑94 (MQ=60)

                                                                                            CGGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATATGACTATT   >  SRR4302533.6079360/1‑94 (MQ=60)

                                                                                             GGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATATGACTATTT  >  SRR4302533.391103/1‑94 (MQ=60)

                                                                                             GGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATATGACTATTT  >  SRR4302533.4220578/1‑94 (MQ=60)

AGCGTGTGCTCGGCTACCGCATCTTTAGCGATGCCGAAGGCAAGATGAATCTCAACGTGCAACAGGCGGGCGGCAGTGTGCTGGTGGTTTCCCAGTTTACCCTCGCCGCAGATACCGAACGGGGGATGCGCCCAAGTTTCTCCAAAGGTGCATCACCGGATCGCGCAGAGGCGTTATATGACTATTT  >  NC_000913/4074734‑4074920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`