Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,076,069 T→C intergenic (+51/‑775) yiiD → / → yiiE putative acetyltransferase/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,076,0690TC100.0% 475.6 / NA 146intergenic (+51/‑775)yiiD/yiiEputative acetyltransferase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (46/100);  total (46/100)

Only 100 of 151 total aligned reads displayed.

ATTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGTCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTCAG  >  NC_000913/4075979‑4076158
                                                                                          |                                                                                         
aTTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGccc                                                                                         >  1:3373811/1‑93 (MQ=255)
aTTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGccc                                                                                         <  1:3822756/93‑1 (MQ=255)
aTTTGACCTGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGccc                                                                                         <  2:5991831/93‑1 (MQ=255)
 tttGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCt                                                                                        <  1:4622658/93‑1 (MQ=255)
 tttGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCt                                                                                        >  1:4265136/1‑93 (MQ=255)
 tttGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCt                                                                                        >  2:6168187/1‑93 (MQ=255)
 tttGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCt                                                                                        >  1:3947202/1‑93 (MQ=255)
  ttGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCtt                                                                                       <  2:2308122/93‑1 (MQ=255)
  ttGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCtt                                                                                       <  2:2730354/93‑1 (MQ=255)
  ttGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCtt                                                                                       <  1:1530137/93‑1 (MQ=255)
  ttGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCtt                                                                                       <  1:3126395/93‑1 (MQ=255)
  ttGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCtt                                                                                       <  1:2095029/93‑1 (MQ=255)
   tGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTg                                                                                      <  2:1376186/93‑1 (MQ=255)
   tGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTg                                                                                      <  2:3604504/93‑1 (MQ=255)
   tGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTg                                                                                      <  1:5627218/93‑1 (MQ=255)
    ggCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTgg                                                                                     <  2:5896408/93‑1 (MQ=255)
    ggCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTgg                                                                                     <  1:2580361/93‑1 (MQ=255)
     gCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGc                                                                                    <  2:5449938/93‑1 (MQ=255)
     gCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGc                                                                                    <  1:1245043/93‑1 (MQ=255)
      cccGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCt                                                                                   <  1:2065351/93‑1 (MQ=255)
       ccGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTa                                                                                  <  1:2237448/93‑1 (MQ=255)
       ccGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTa                                                                                  <  2:5228186/93‑1 (MQ=255)
        cGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTAt                                                                                 <  1:6309744/93‑1 (MQ=255)
         gTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTAtt                                                                                <  1:1683412/93‑1 (MQ=255)
         gTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTAtt                                                                                <  1:3136878/93‑1 (MQ=255)
         gTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTAtt                                                                                <  2:7939/93‑1 (MQ=255)
         gTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTAtt                                                                                <  1:5400007/93‑1 (MQ=255)
          tATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTAttt                                                                               >  1:1122690/1‑93 (MQ=255)
            tGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCg                                                                             <  1:1202999/93‑1 (MQ=255)
              aaGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGt                                                                           <  1:1250596/93‑1 (MQ=255)
               agagGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGtt                                                                          <  1:2634113/93‑1 (MQ=255)
                gagGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTta                                                                         <  1:3355124/93‑1 (MQ=255)
                gagGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTta                                                                         <  2:4265751/93‑1 (MQ=255)
                gagGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTta                                                                         <  1:4066599/93‑1 (MQ=255)
                  gggCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTtata                                                                       <  2:5938263/93‑1 (MQ=255)
                  gggCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTtata                                                                       <  2:7668/93‑1 (MQ=255)
                  gggCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTtata                                                                       <  2:859697/93‑1 (MQ=255)
                   ggCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTatat                                                                      <  2:1296177/93‑1 (MQ=255)
                    gCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATAtt                                                                     <  2:2019460/93‑1 (MQ=255)
                    gCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATAtt                                                                     >  2:33532/1‑93 (MQ=255)
                    gCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATAtt                                                                     <  2:4824843/93‑1 (MQ=255)
                    gCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATAtt                                                                     <  1:4131555/93‑1 (MQ=255)
                     gtggAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTa                                                                    <  1:1389757/91‑1 (MQ=255)
                     cGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTa                                                                    <  2:2651428/93‑1 (MQ=255)
                     cGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTa                                                                    <  1:3529256/93‑1 (MQ=255)
                     cGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTa                                                                    <  2:5572444/93‑1 (MQ=255)
                      gggAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTaa                                                                   <  2:2689359/93‑1 (MQ=255)
                      gggAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTaa                                                                   <  2:3325153/93‑1 (MQ=255)
                       ggAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTaaa                                                                  <  1:5298322/93‑1 (MQ=255)
                        gAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAAt                                                                 <  2:4694745/93‑1 (MQ=255)
                         aaCGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATa                                                                <  1:5562947/93‑1 (MQ=255)
                         aaCGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATa                                                                >  1:4585941/1‑93 (MQ=255)
                           cGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAg                                                              <  1:2781493/93‑1 (MQ=255)
                            gaagaaGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGa                                                             <  1:5691483/93‑1 (MQ=255)
                            gaagaaGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGa                                                             <  1:1909873/93‑1 (MQ=255)
                             aagaagAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGaa                                                            >  1:2579161/1‑93 (MQ=255)
                             aagaagAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGaa                                                            <  2:163440/93‑1 (MQ=255)
                             aagaagAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGaa                                                            <  1:755329/93‑1 (MQ=255)
                              agaagaGTAGCTGATGGAGAGGGGCGGTGGTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAAc                                                           >  2:5499678/1‑93 (MQ=255)
                                aagaGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAActc                                                         <  1:2943125/93‑1 (MQ=255)
                                  gagTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCta                                                       >  1:3581876/1‑93 (MQ=255)
                                   agTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCtat                                                      <  1:1341607/93‑1 (MQ=255)
                                    gTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCtata                                                     <  2:4670724/93‑1 (MQ=255)
                                     tAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATaa                                                    <  1:5071738/93‑1 (MQ=255)
                                      aGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATaaa                                                   <  2:391606/93‑1 (MQ=255)
                                       gCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAAt                                                  <  2:4481335/93‑1 (MQ=255)
                                        cTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAAtt                                                 <  1:4273657/93‑1 (MQ=255)
                                           aTGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAAATCTATAAAttttt                                              <  2:5879045/93‑1 (MQ=255)
                                            tGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTa                                             <  1:1843303/93‑1 (MQ=255)
                                              gagaGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTAtt                                           <  2:2509529/93‑1 (MQ=255)
                                              gagaGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTAtt                                           <  2:3461894/93‑1 (MQ=255)
                                                 agGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTAttctt                                        <  2:4220812/93‑1 (MQ=255)
                                                 agGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTAttctt                                        >  1:2496783/1‑93 (MQ=255)
                                                   gggCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCg                                      <  2:1902939/93‑1 (MQ=255)
                                                    ggCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGt                                     <  1:3458336/93‑1 (MQ=255)
                                                    ggCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGt                                     <  2:5046233/93‑1 (MQ=255)
                                                     gCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGtt                                    >  1:6045129/1‑93 (MQ=255)
                                                       ggTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTgg                                  <  1:961720/93‑1 (MQ=255)
                                                        gTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGc                                 <  1:196843/93‑1 (MQ=255)
                                                          gctgcCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTc                               <  1:3932690/93‑1 (MQ=255)
                                                           ctgcCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTcc                              >  1:5295374/1‑93 (MQ=255)
                                                            tgcCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCa                             >  2:3458713/1‑93 (MQ=255)
                                                            tgcCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCa                             <  1:551631/93‑1 (MQ=255)
                                                            tgcCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCa                             >  2:5697729/1‑93 (MQ=255)
                                                              ccTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATa                           <  2:635098/93‑1 (MQ=255)
                                                              ccTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATa                           <  2:5058245/93‑1 (MQ=255)
                                                                     cATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCt                    <  1:5046414/93‑1 (MQ=255)
                                                                       ttCAGGTCCTTTATATTAGCCCTTGGCTAATTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTg                  >  2:2878748/1‑93 (MQ=255)
                                                                       ttCAGGTCATTTATATTAGCCCTTGGCTAATTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTg                  >  2:2878747/1‑93 (MQ=255)
                                                                         cAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCt                >  2:4127701/1‑93 (MQ=255)
                                                                          aGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTa               >  1:3063467/1‑93 (MQ=255)
                                                                               aTTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCa          >  2:4158777/1‑93 (MQ=255)
                                                                               aTTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCa          >  2:2115269/1‑93 (MQ=255)
                                                                                tttATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCAc         >  1:5398545/1‑93 (MQ=255)
                                                                                tttATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCAc         <  1:2413262/93‑1 (MQ=255)
                                                                                     atTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTc    <  2:548348/93‑1 (MQ=255)
                                                                                      ttAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTCa   <  2:5501268/93‑1 (MQ=255)
                                                                                      ttAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTCa   >  1:798751/1‑93 (MQ=255)
                                                                                       tAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTCAg  <  2:519321/93‑1 (MQ=255)
                                                                                       tAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTCAg  <  1:880504/93‑1 (MQ=255)
                                                                                          |                                                                                         
ATTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGTCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTCAG  >  NC_000913/4075979‑4076158

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCATTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGTCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTCAGG  >  NC_000913/4075977‑4076159
                                                                                            |                                                                                          
CCATTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCC                                                                                           >  SRR4302533.4742349/1‑94 (MQ=60)
CCATTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCC                                                                                           <  SRR4302533.2982014/94‑1 (MQ=60)
 CATTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCC                                                                                          >  SRR4302533.3394647/1‑94 (MQ=60)
 CATTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCC                                                                                          <  SRR4302533.526521/94‑1 (MQ=60)
  ATTTGTCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCT                                                                                         <  SRR4302533.3215332/94‑1 (MQ=60)
  ATTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCT                                                                                         <  SRR4302533.3846127/94‑1 (MQ=60)
  ATTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCT                                                                                         >  SRR4302533.3971273/1‑94 (MQ=60)
  ATTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCT                                                                                         >  SRR4302533.4290821/1‑94 (MQ=60)
  ATTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCT                                                                                         >  SRR4302533.3442961/1‑94 (MQ=60)
  ATTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCT                                                                                         <  SRR4302533.1941171/94‑1 (MQ=60)
   TTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTT                                                                                        <  SRR4302533.4650677/94‑1 (MQ=60)
    TTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTG                                                                                       <  SRR4302533.1539337/94‑1 (MQ=60)
    TTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTG                                                                                       <  SRR4302533.2107929/94‑1 (MQ=60)
    TTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTG                                                                                       <  SRR4302533.3145614/94‑1 (MQ=60)
     TGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGG                                                                                      <  SRR4302533.5661241/94‑1 (MQ=60)
      GGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGC                                                                                     <  SRR4302533.2596238/94‑1 (MQ=60)
       GCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCT                                                                                    <  SRR4302533.1252477/94‑1 (MQ=60)
        CCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTA                                                                                   <  SRR4302533.5655408/94‑1 (MQ=60)
        CCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTA                                                                                   <  SRR4302533.2078080/94‑1 (MQ=60)
         CCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTAT                                                                                  <  SRR4302533.2251277/94‑1 (MQ=60)
          CGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATT                                                                                 <  SRR4302533.6347696/94‑1 (MQ=60)
           GTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTT                                                                                <  SRR4302533.1693611/94‑1 (MQ=60)
           GTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTT                                                                                <  SRR4302533.5432455/94‑1 (MQ=60)
           GTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTT                                                                                <  SRR4302533.3156165/94‑1 (MQ=60)
           GTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTT                                                                                >  SRR4302533.1129355/1‑94 (MQ=60)
              TGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGG                                                                             <  SRR4302533.1210230/94‑1 (MQ=60)
                AAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTT                                                                           <  SRR4302533.1258069/94‑1 (MQ=60)
                 AGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTA                                                                          <  SRR4302533.2650302/94‑1 (MQ=60)
                  GAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTAT                                                                         <  SRR4302533.4091354/94‑1 (MQ=60)
                  GAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTAT                                                                         <  SRR4302533.4390647/94‑1 (MQ=60)
                  GAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTAT                                                                         <  SRR4302533.3375856/94‑1 (MQ=60)
                    GGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATAT                                                                       <  SRR4302533.525988/94‑1 (MQ=60)
                    GGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATAT                                                                       <  SRR4302533.5337920/94‑1 (MQ=60)
                      GCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTA                                                                     <  SRR4302533.4156632/94‑1 (MQ=60)
                       gtGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAA                                                                    <  SRR4302533.1398128/92‑1 (MQ=60)
                       CGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAA                                                                    <  SRR4302533.3551005/94‑1 (MQ=60)
                       CGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAA                                                                    >  SRR4302533.1278861/1‑94 (MQ=60)
                        GGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAA                                                                   <  SRR4302533.2399031/94‑1 (MQ=60)
                         GGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAAT                                                                  <  SRR4302533.5330062/94‑1 (MQ=60)
                         GGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAAT                                                                  <  SRR4302533.5478662/94‑1 (MQ=60)
                          GAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATA                                                                 >  SRR4302533.4613722/1‑94 (MQ=60)
                           AACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAA                                                                <  SRR4302533.5596571/94‑1 (MQ=60)
                             CGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGA                                                              <  SRR4302533.2798580/94‑1 (MQ=60)
                             CGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGA                                                              >  SRR4302533.1824910/1‑94 (MQ=60)
                              GAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAA                                                             <  SRR4302533.1921525/94‑1 (MQ=60)
                              GAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAA                                                             <  SRR4302533.5725855/94‑1 (MQ=60)
                              GAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAA                                                             >  SRR4302533.421204/1‑94 (MQ=60)
                              GAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAA                                                             >  SRR4302533.2595033/1‑94 (MQ=60)
                              GAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAA                                                             >  SRR4302533.359618/1‑94 (MQ=60)
                               AAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAAC                                                            <  SRR4302533.759774/94‑1 (MQ=60)
                                  AAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCT                                                         <  SRR4302533.2961091/94‑1 (MQ=60)
                                   AGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTA                                                        >  SRR4302533.3603940/1‑94 (MQ=60)
                                     AGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATA                                                      <  SRR4302533.1349686/94‑1 (MQ=60)
                                     AGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATA                                                      <  SRR4302533.1224102/94‑1 (MQ=60)
                                       TAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAA                                                    <  SRR4302533.5102393/94‑1 (MQ=60)
                                          CTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTT                                                 <  SRR4302533.4299372/94‑1 (MQ=60)
                                              TGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTAT                                             <  SRR4302533.1854545/94‑1 (MQ=60)
                                                  GAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTT                                         >  SRR4302533.2512184/1‑94 (MQ=60)
                                                   AGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTC                                        <  SRR4302533.4035142/94‑1 (MQ=60)
                                                      GGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTT                                     <  SRR4302533.3479686/94‑1 (MQ=60)
                                                      GGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTT                                     >  SRR4302533.6081751/1‑94 (MQ=60)
                                                      GGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTT                                     <  SRR4302533.763203/94‑1 (MQ=60)
                                                        CGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGG                                   >  SRR4302533.1430922/1‑94 (MQ=60)
                                                         GGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTTTATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGC                                  >  SRR4302533.3102667/1‑94 (MQ=60)
                                                         GGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGC                                  <  SRR4302533.967369/94‑1 (MQ=60)
                                                          GTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCT                                 <  SRR4302533.198084/94‑1 (MQ=60)
                                                           TGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTC                                >  SRR4302533.640162/1‑94 (MQ=60)
                                                            GCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCC                               >  SRR4302533.5327089/1‑94 (MQ=60)
                                                            GCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCC                               <  SRR4302533.3956697/94‑1 (MQ=60)
                                                             CTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCA                              >  SRR4302533.2626619/1‑94 (MQ=60)
                                                              TGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCAT                             <  SRR4302533.554901/94‑1 (MQ=60)
                                                                CCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATAC                           <  SRR4302533.3888227/94‑1 (MQ=60)
                                                                   CTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTG                        >  SRR4302533.2936636/1‑94 (MQ=60)
                                                                       CATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTT                    <  SRR4302533.5076941/94‑1 (MQ=60)
                                                                        ATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTG                   <  SRR4302533.6069818/94‑1 (MQ=60)
                                                                           CAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTA                >  SRR4302533.3082276/1‑94 (MQ=60)
                                                                             GGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACA              >  SRR4302533.953081/1‑94 (MQ=60)
                                                                                 ATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCAC          >  SRR4302533.5430985/1‑94 (MQ=60)
                                                                                 ATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCAC          >  SRR4302533.2091291/1‑94 (MQ=60)
                                                                                  TTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACT         <  SRR4302533.2428171/94‑1 (MQ=60)
                                                                                       ATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTCA    >  SRR4302533.803451/1‑94 (MQ=60)
                                                                                        TTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTCAG   <  SRR4302533.2534191/94‑1 (MQ=60)
                                                                                         TAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTCAGG  >  SRR4302533.1536971/1‑94 (MQ=60)
                                                                                         TAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTCAGG  <  SRR4302533.4685725/94‑1 (MQ=60)
                                                                                         TAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTCAGG  <  SRR4302533.885674/94‑1 (MQ=60)
                                                                                            |                                                                                          
CCATTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGTCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTCAGG  >  NC_000913/4075977‑4076159

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑