Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,081,716	A→G	F563L (TTC→CTC)	fdoG ←	formate dehydrogenase‑O, major subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,081,716	0	A	G	100.0%	861.1 / NA	264	F563L (TTC→CTC)	fdoG	formate dehydrogenase‑O, major subunit
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (116/148); total (116/148)

Only 100 of 265 total aligned reads displayed.

AGAAGTTAGAGGTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAATGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGGACGTCGTAGCCTT  >  NC_000913/4081626‑4081805

aGAAGTTAGAGGTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTg                                                                                         >  2:323883/1‑93 (MQ=255)

 gAAGTTAGAGGTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGa                                                                                        >  2:1055379/1‑93 (MQ=255)

  aaGTTAGAGTTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAg                                                                                       <  1:2949340/93‑1 (MQ=255)

   aGTTAGAGATTTCAGTGTTCAGTGGCTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAgg                                                                                      <  2:3959195/93‑1 (MQ=255)

    gTTAGAGGTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGc                                                                                     <  1:4064017/93‑1 (MQ=255)

        gagGTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACa                                                                                 <  2:1581276/93‑1 (MQ=255)

        gagGTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACa                                                                                 <  2:2129642/93‑1 (MQ=255)

        gagGTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTCCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACa                                                                                 <  1:3335451/93‑1 (MQ=255)

         agGTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAg                                                                                <  2:4151606/93‑1 (MQ=255)

           gTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAggg                                                                              <  2:2431209/93‑1 (MQ=255)

            tttCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGt                                                                             <  1:6303432/93‑1 (MQ=255)

            tttCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGt                                                                             <  1:3520558/93‑1 (MQ=255)

            tttCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGt                                                                             >  2:431315/1‑93 (MQ=255)

              tcagtgttcagtgGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTa                                                                           >  2:205149/1‑93 (MQ=255)

              tcagtgttcagtgGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTa                                                                           <  1:1450330/93‑1 (MQ=255)

                agtgttcagtgGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTaaa                                                                         >  2:5475238/1‑93 (MQ=255)

                 gtgttcagtgGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAg                                                                        >  2:4685222/1‑93 (MQ=255)

                  tgtgcagtgGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGc                                                                       <  2:2192892/93‑1 (MQ=255)

                   gttcagtgGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGcc                                                                      >  1:5567032/1‑93 (MQ=255)

                    ttcagtgGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGccc                                                                     >  1:4359631/1‑93 (MQ=255)

                    ttcagtgGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGccc                                                                     >  1:5990002/1‑93 (MQ=255)

                    ttcagtgGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGccc                                                                     <  1:131827/93‑1 (MQ=255)

                     tcagtgTGTCGATGTTGGCGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGcctt                                                                    <  2:6211806/93‑3 (MQ=38)

                     tcagtgGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCt                                                                    <  2:4182830/93‑1 (MQ=255)

                     tcagtgGGGCGATGGAGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCt                                                                    >  2:3790163/1‑93 (MQ=255)

                        gtgGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGc                                                                 >  1:3481001/1‑93 (MQ=255)

                        gtgGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGc                                                                 >  2:5951864/1‑93 (MQ=255)

                        gtgGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGc                                                                 >  2:3131738/1‑93 (MQ=255)

                         tgGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTggaa                                                                <  2:5008765/93‑3 (MQ=255)

                         tgGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCa                                                                <  1:4808608/93‑1 (MQ=255)

                          gggTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAg                                                               >  1:1860643/1‑93 (MQ=255)

                           ggTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGa                                                              <  2:4033802/93‑1 (MQ=255)

                           ggTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGa                                                              >  1:3782181/1‑93 (MQ=255)

                           ggTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGa                                                              <  1:3132365/93‑1 (MQ=255)

                           ggTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGa                                                              <  2:1140634/93‑1 (MQ=255)

                             tCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGata                                                            <  1:2635715/93‑1 (MQ=255)

                             gcGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGata                                                            <  1:4004168/92‑1 (MQ=255)

                               gATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGAtata                                                          >  2:1621164/1‑93 (MQ=255)

                               gATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGAtata                                                          <  1:749961/93‑1 (MQ=255)

                               gATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGAtata                                                          <  2:1166466/93‑1 (MQ=255)

                               gATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGAtata                                                          <  1:2875879/93‑1 (MQ=255)

                                 tGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGc                                                        >  1:1058968/1‑93 (MQ=255)

                                   gTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCa                                                      <  2:1384769/93‑1 (MQ=255)

                                     gACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCAtt                                                    <  1:2797219/93‑1 (MQ=255)

                                     gACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGGTAAAGCCCTGGCAGATATAGCCAtt                                                    >  2:920861/1‑93 (MQ=255)

                                      aCGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTg                                                   <  1:4292139/93‑1 (MQ=255)

                                       cGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGa                                                  >  1:6024834/1‑93 (MQ=255)

                                        gAGGAACTTCAGTTTCGACAGACAAACGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGAc                                                 >  1:4552074/1‑93 (MQ=255)

                                           gAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCtt                                              <  1:5867065/93‑1 (MQ=255)

                                           gAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCtt                                              >  2:2550339/1‑93 (MQ=255)

                                           gAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCtt                                              <  1:3722542/93‑1 (MQ=255)

                                            aaCTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTg                                             >  1:1956439/1‑93 (MQ=255)

                                              cTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGcc                                           <  1:3021152/93‑1 (MQ=255)

                                              cTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGcc                                           >  1:2450555/1‑93 (MQ=255)

                                               ttCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGccc                                          >  2:1660971/1‑93 (MQ=255)

                                               ttCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGccc                                          <  2:2717119/93‑1 (MQ=255)

                                                tCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCct                                         <  2:3535000/93‑1 (MQ=255)

                                                 cAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCctc                                        <  2:2297483/93‑1 (MQ=255)

                                                  aGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGGTAAAGCCCTTGCAGATATAGCCATTGACCTTGCCctct                                       >  2:5588935/1‑93 (MQ=255)

                                                   gTTTCGACCGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCtt                                      >  2:521898/1‑93 (MQ=255)

                                                    tttCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCttt                                     <  2:5689334/93‑1 (MQ=255)

                                                        gacagacaACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTtcatc                                 >  1:13053/1‑93 (MQ=255)

                                                        gacagacaACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTtcatc                                 <  1:2311581/93‑1 (MQ=255)

                                                        gacagacaACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTtcatc                                 >  2:4562969/1‑93 (MQ=255)

                                                         acagacaACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTtcatca                                <  1:1040231/93‑1 (MQ=255)

                                                         acagacaACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTtcatca                                >  1:1806398/1‑93 (MQ=255)

                                                         acagacaACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTtcatca                                <  1:840271/93‑1 (MQ=255)

                                                         acagacaACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTtcatca                                <  1:6264729/93‑1 (MQ=255)

                                                           agacaACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCatcatc                              >  1:5674209/1‑93 (MQ=255)

                                                           agacaACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCatcatc                              <  1:3559099/93‑1 (MQ=255)

                                                            gacaACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCAtct                             <  2:1902410/93‑1 (MQ=255)

                                                              caACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCg                           >  2:6060582/1‑93 (MQ=255)

                                                               aaCCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGa                          <  1:2961838/93‑1 (MQ=255)

                                                                aCCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGaa                         >  2:2984266/1‑93 (MQ=255)

                                                                 ccGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAg                        >  2:829560/1‑93 (MQ=255)

                                                                  cGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGt                       >  2:69142/1‑93 (MQ=255)

                                                                   gATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTa                      >  1:763518/1‑93 (MQ=255)

                                                                   gATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTa                      <  1:4989496/93‑1 (MQ=255)

                                                                    aTCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTAt                     <  1:2144223/93‑1 (MQ=255)

                                                                    aTCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTAt                     >  2:4219549/1‑93 (MQ=255)

                                                                     tCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCTATTGACCTTGCCCTCTTTCATCATCTCGAAGTAtt                    <  2:1396670/93‑1 (MQ=255)

                                                                     tCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTAtt                    <  2:2953303/93‑1 (MQ=255)

                                                                       aCTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGc                  >  2:2599434/1‑93 (MQ=255)

                                                                       aCTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGc                  <  1:4722803/93‑1 (MQ=255)

                                                                       aCTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGc                  >  2:1750052/1‑93 (MQ=255)

                                                                        cTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCa                 >  2:4870383/1‑93 (MQ=255)

                                                                        cTTTGTTTTTGTGCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCa                 <  1:1638319/93‑1 (MQ=255)

                                                                         tttgtttttgttCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAg                <  1:1603211/93‑1 (MQ=255)

                                                                          ttgtttttgttCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAgg               >  2:4630256/1‑93 (MQ=255)

                                                                          ttgtttttgttCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAgg               <  2:1213081/93‑1 (MQ=255)

                                                                          ttgtttttgttCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAgg               >  2:3056862/1‑93 (MQ=255)

                                                                          ttgtttttgttCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAgg               >  2:3362186/1‑93 (MQ=255)

                                                                           tgtttttgttCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGGa              <  2:5433053/93‑1 (MQ=255)

                                                                           tgtttttgttCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGGa              <  1:4051374/93‑1 (MQ=255)

                                                                                 tgttCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGGAcgtcgt        >  1:4202361/1‑93 (MQ=255)

                                                                                  gttCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGGACGTCGTa       <  1:2366161/93‑1 (MQ=255)

                                                                                    tCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGGACGTCGTAGc     <  1:5174446/93‑1 (MQ=255)

                                                                                      gggAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGGACGTCGTAGCCt   >  1:5242249/1‑93 (MQ=255)

                                                                                      gggAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGGACGTCGTAGCCt   >  1:6152063/1‑93 (MQ=255)

                                                                                       ggAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGGACGTCGTAGCCtt  >  2:57977/1‑93 (MQ=255)

AGAAGTTAGAGGTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAATGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGGACGTCGTAGCCTT  >  NC_000913/4081626‑4081805

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCCAGAAGTTAGAGGTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAATGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGGACGTCGTAGCCTTTATC  >  NC_000913/4081623‑4081809

GCCAGAAGTTAGAGGTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAG                                                                                               <  SRR4302533.935744/94‑1 (MQ=60)

GCCAGAAGTTAGAGGTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAG                                                                                               <  SRR4302533.4614175/94‑1 (MQ=60)

 CCAGAAGTTAGAGGTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGT                                                                                              <  SRR4302533.804247/94‑1 (MQ=60)

 CCAGAAGTTAGAGGTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGT                                                                                              <  SRR4302533.3864234/94‑1 (MQ=60)

  CAGAAGTTAGAGGTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTG                                                                                             >  SRR4302533.1896118/1‑94 (MQ=60)

   AGAAGTTAGAGGTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGA                                                                                            <  SRR4302533.4543159/94‑1 (MQ=60)

    GAAGTTAGAGGTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAG                                                                                           <  SRR4302533.690074/94‑1 (MQ=60)

    GAAGTTAGAGGTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAG                                                                                           >  SRR4302533.5244942/1‑94 (MQ=60)

     AAGTTAGAGTTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGG                                                                                          <  SRR4302533.2967378/94‑1 (MQ=60)

     AAGTTAGAGGTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGG                                                                                          >  SRR4302533.5514324/1‑94 (MQ=60)

      AGTTAGAGGTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGC                                                                                         <  SRR4302533.2324275/94‑1 (MQ=60)

       GTTAGAGGTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCA                                                                                        <  SRR4302533.4088753/94‑1 (MQ=60)

          AGAGGTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACA                                                                                     >  SRR4302533.2535339/1‑94 (MQ=60)

           GAGGTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTCCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAG                                                                                    <  SRR4302533.3356059/94‑1 (MQ=60)

            AGGTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGG                                                                                   >  SRR4302533.2969575/1‑94 (MQ=60)

            AGGTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGG                                                                                   <  SRR4302533.3572165/94‑1 (MQ=60)

              GTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGT                                                                                 >  SRR4302533.2683698/1‑94 (MQ=60)

               TTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTT                                                                                <  SRR4302533.3542260/94‑1 (MQ=60)

               TTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTT                                                                                <  SRR4302533.6341109/94‑1 (MQ=60)

                TTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTA                                                                               >  SRR4302533.759198/1‑94 (MQ=60)

                 TCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAA                                                                              <  SRR4302533.1459081/94‑1 (MQ=60)

                   AGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAG                                                                            <  SRR4302533.624237/94‑1 (MQ=60)

                    GTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGC                                                                           >  SRR4302533.1845148/1‑94 (MQ=60)

                    GTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGC                                                                           >  SRR4302533.4085235/1‑94 (MQ=60)

                     TGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCC                                                                          >  SRR4302533.5600681/1‑94 (MQ=60)

                     TGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCC                                                                          <  SRR4302533.5918660/94‑1 (MQ=60)

                      tgTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCC                                                                         <  SRR4302533.1240624/92‑1 (MQ=60)

                      GTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCC                                                                         >  SRR4302533.6029586/1‑94 (MQ=60)

                      GTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCC                                                                         >  SRR4302533.4385945/1‑94 (MQ=60)

                      GTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCC                                                                         >  SRR4302533.6026285/1‑94 (MQ=60)

                       TTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCT                                                                        <  SRR4302533.463247/94‑1 (MQ=60)

                       TTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCT                                                                        <  SRR4302533.132655/94‑1 (MQ=60)

                       TTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCT                                                                        <  SRR4302533.5918380/94‑1 (MQ=60)

                        TCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTG                                                                       <  SRR4302533.1838895/94‑1 (MQ=60)

                          AGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGC                                                                     >  SRR4302533.3502474/1‑94 (MQ=60)

                           GTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCA                                                                    >  SRR4302533.3412554/1‑94 (MQ=60)

                            TGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAG                                                                   >  SRR4302533.1871990/1‑94 (MQ=60)

                            TGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAG                                                                   <  SRR4302533.3982162/94‑1 (MQ=60)

                            TGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAG                                                                   <  SRR4302533.4837721/94‑1 (MQ=60)

                            TGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAG                                                                   <  SRR4302533.494223/94‑1 (MQ=60)

                            TGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAG                                                                   <  SRR4302533.3107897/94‑1 (MQ=60)

                            TGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAG                                                                   <  SRR4302533.6073552/94‑1 (MQ=60)

                             GGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGA                                                                  >  SRR4302533.3805346/1‑94 (MQ=60)

                              GGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGAT                                                                 <  SRR4302533.3151624/94‑1 (MQ=60)

                               GTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATA                                                                >  SRR4302533.6125078/1‑94 (MQ=60)

                                TCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATAT                                                               <  SRR4302533.2651913/94‑1 (MQ=60)

                                GCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATAT                                                               <  SRR4302533.4028546/94‑1 (MQ=60)

                                 CGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATA                                                              >  SRR4302533.883442/1‑94 (MQ=60)

                                 CGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATA                                                              <  SRR4302533.3610063/94‑1 (MQ=60)

                                 CGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATA                                                              <  SRR4302533.2402867/94‑1 (MQ=60)

                                  GATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAG                                                             <  SRR4302533.2919874/94‑1 (MQ=60)

                                  GATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAG                                                             <  SRR4302533.754377/94‑1 (MQ=60)

                                  GATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAG                                                             <  SRR4302533.2893574/94‑1 (MQ=60)

                                   ATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGC                                                            >  SRR4302533.1065194/1‑94 (MQ=60)

                                       TGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCGCTGGCAGATATAGCCATT                                                        >  SRR4302533.1698860/1‑94 (MQ=60)

                                       TGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATT                                                        <  SRR4302533.1999424/94‑1 (MQ=60)

                                       TGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATT                                                        <  SRR4302533.5635689/94‑1 (MQ=60)

                                        GACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTG                                                       <  SRR4302533.2814423/94‑1 (MQ=60)

                                         ACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGA                                                      >  SRR4302533.6061343/1‑94 (MQ=60)

                                         ACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGA                                                      <  SRR4302533.4317951/94‑1 (MQ=60)

                                          CGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGAC                                                     >  SRR4302533.4058933/1‑94 (MQ=60)

                                          CGAGGAACTTCAGTTTCGACAGACAAACGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGAC                                                     >  SRR4302533.4579681/1‑94 (MQ=60)

                                           GAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACC                                                    >  SRR4302533.3100660/1‑94 (MQ=60)

                                            AGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCT                                                   >  SRR4302533.400707/1‑94 (MQ=60)

                                             GGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTT                                                  <  SRR4302533.4051140/94‑1 (MQ=60)

                                             GGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTT                                                  <  SRR4302533.3212084/94‑1 (MQ=60)

                                              GAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTG                                                 <  SRR4302533.5902529/94‑1 (MQ=60)

                                              GAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTG                                                 <  SRR4302533.3745384/94‑1 (MQ=60)

                                              GAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTG                                                 >  SRR4302533.1968374/1‑94 (MQ=60)

                                                ACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCC                                               >  SRR4302533.2823653/1‑94 (MQ=60)

                                                ACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCC                                               >  SRR4302533.4286721/1‑94 (MQ=60)

                                                ACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCC                                               >  SRR4302533.2465681/1‑94 (MQ=60)

                                                 CTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCC                                              <  SRR4302533.3039640/94‑1 (MQ=60)

                                                 CTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCC                                              >  SRR4302533.835153/1‑94 (MQ=60)

                                                 CTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCC                                              >  SRR4302533.5177461/1‑94 (MQ=60)

                                                  TTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCT                                             >  SRR4302533.2564574/1‑94 (MQ=60)

                                                   TCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTC                                            <  SRR4302533.1411872/94‑1 (MQ=60)

                                                   TCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTC                                            <  SRR4302533.1052968/94‑1 (MQ=60)

                                                     AGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTT                                          <  SRR4302533.6303515/94‑1 (MQ=60)

                                                      GTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTT                                         <  SRR4302533.5611909/94‑1 (MQ=60)

                                                      GTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTT                                         <  SRR4302533.758539/94‑1 (MQ=60)

                                                          CGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATC                                     >  SRR4302533.5348362/1‑94 (MQ=60)

                                                          CGACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATC                                     >  SRR4302533.13153/1‑94 (MQ=60)

                                                           GACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCA                                    <  SRR4302533.2325901/94‑1 (MQ=60)

                                                           GACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCA                                    >  SRR4302533.1817392/1‑94 (MQ=60)

                                                           GACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCA                                    <  SRR4302533.1203144/94‑1 (MQ=60)

                                                           GACAGACAACCGATCACTTTGTTTTTGTACGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGCCCTTGCCCTCTTTCATCA                                    <  SRR4302533.3768173/94‑1 (MQ=60)

                                                            ACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCAT                                   <  SRR4302533.4134835/94‑1 (MQ=60)

                                                            ACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCAT                                   <  SRR4302533.1046347/94‑1 (MQ=60)

                                                            ACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCAT                                   <  SRR4302533.6302170/94‑1 (MQ=60)

                                                            ACAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCAT                                   <  SRR4302533.845185/94‑1 (MQ=60)

                                                             CAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATC                                  >  SRR4302533.5708475/1‑94 (MQ=60)

                                                             CAGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGACCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATC                                  >  SRR4302533.2862068/1‑94 (MQ=60)

                                                              AGACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCT                                 <  SRR4302533.3581030/94‑1 (MQ=60)

                                                               GACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTC                                <  SRR4302533.2223280/94‑1 (MQ=60)

                                                               GACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTC                                <  SRR4302533.299991/94‑1 (MQ=60)

                                                                ACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCG                               <  SRR4302533.714877/94‑1 (MQ=60)

                                                                ACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCG                               <  SRR4302533.2124052/94‑1 (MQ=60)

                                                                ACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCG                               <  SRR4302533.3576157/94‑1 (MQ=60)

                                                                ACAACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCG                               <  SRR4302533.4223470/94‑1 (MQ=60)

                                                                  AACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAA                             <  SRR4302533.1344674/94‑1 (MQ=60)

                                                                  AACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAA                             <  SRR4302533.2979943/94‑1 (MQ=60)

                                                                   ACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAG                            <  SRR4302533.3514847/94‑1 (MQ=60)

                                                                   ACCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAG                            >  SRR4302533.4562862/1‑94 (MQ=60)

                                                                    CCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGT                           >  SRR4302533.497782/1‑94 (MQ=60)

                                                                    CCGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGT                           <  SRR4302533.4377067/94‑1 (MQ=60)

                                                                    CCGATCACTTTGTTTTTGTTCGGGAGCGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGT                           >  SRR4302533.2328849/1‑94 (MQ=60)

                                                                     CGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTA                          >  SRR4302533.1628568/1‑94 (MQ=60)

                                                                     CGATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTA                          >  SRR4302533.768013/1‑94 (MQ=60)

                                                                      GATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTAT                         <  SRR4302533.4305695/94‑1 (MQ=60)

                                                                      GATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTAT                         <  SRR4302533.5019746/94‑1 (MQ=60)

                                                                       ATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATT                        <  SRR4302533.2157432/94‑1 (MQ=60)

                                                                       ATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATT                        <  SRR4302533.2929857/94‑1 (MQ=60)

                                                                       ATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATT                        >  SRR4302533.4757227/1‑94 (MQ=60)

                                                                       ATCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATT                        <  SRR4302533.160247/94‑1 (MQ=60)

                                                                        TCACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTG                       <  SRR4302533.1559697/94‑1 (MQ=60)

                                                                         CACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGC                      >  SRR4302533.5034258/1‑94 (MQ=60)

                                                                         CACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGC                      >  SRR4302533.2418632/1‑94 (MQ=60)

                                                                          ACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCA                     <  SRR4302533.4751436/94‑1 (MQ=60)

                                                                          ACTTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCA                     <  SRR4302533.4675823/94‑1 (MQ=60)

                                                                           CTTTGTTTTTGTGCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAG                    <  SRR4302533.1648238/94‑1 (MQ=60)

                                                                            TTTGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGG                   <  SRR4302533.1612917/94‑1 (MQ=60)

                                                                              TGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGGAC                 <  SRR4302533.4076051/94‑1 (MQ=60)

                                                                              TGTTTTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGGAC                 <  SRR4302533.912730/94‑1 (MQ=60)

                                                                                  TTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGGACGTCG             <  SRR4302533.3469913/94‑1 (MQ=60)

                                                                                  TTTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGGACGTCG             <  SRR4302533.6221070/94‑1 (MQ=60)

                                                                                   TTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATTTCGAAGTATTGCAGGACGTCGT            <  SRR4302533.2994482/94‑1 (MQ=60)

                                                                                   TTGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGGACGTCGT            >  SRR4302533.4227785/1‑94 (MQ=60)

                                                                                    TGTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGGACGTCGTA           >  SRR4302533.3720426/1‑94 (MQ=60)

                                                                                     GTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGGACGTCGTAG          >  SRR4302533.1326138/1‑94 (MQ=60)

                                                                                     GTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGGACGTCGTAG          <  SRR4302533.5854461/94‑1 (MQ=60)

                                                                                     GTTCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGGACGTCGTAG          <  SRR4302533.2380796/94‑1 (MQ=60)

                                                                                       TCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGGACGTCGTAGCC        <  SRR4302533.1778571/94‑1 (MQ=60)

                                                                                       TCGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGGACGTCGTAGCC        <  SRR4302533.5205702/94‑1 (MQ=60)

                                                                                        CGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGGACGTCGTAGCCT       >  SRR4302533.6189085/1‑94 (MQ=60)

                                                                                        CGGGAGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGGACGTCGTAGCCT       >  SRR4302533.5273758/1‑94 (MQ=60)

                                                                                            AGTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGGACGTCGTAGCCTTTAT   <  SRR4302533.5069208/94‑1 (MQ=60)

                                                                                             GTGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGGACGTCGTAGCCTTTATC  <  SRR4302533.131806/94‑1 (MQ=60)

GCCAGAAGTTAGAGGTTTCAGTGTTCAGTGGGTCGATGGTGACGAGGAACTTCAGTTTCGACAGACAACCGATCACTTTGTTTTTGTTCGGGAATGAGGCAACAGGGTTAAAGCCCTGGCAGATATAGCCATTGACCTTGCCCTCTTTCATCATCTCGAAGTATTGCAGGACGTCGTAGCCTTTATC  >  NC_000913/4081623‑4081809

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`