Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,103,967 |
(T)8→7 |
intergenic (‑716/‑82) |
cpxR ← / → yiiP |
transcriptional regulator in 2‑component system/putative transport system permease protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,103,960 | 0 | T | . | 95.7%
| 859.1
/ 23.2
| 207 | intergenic (‑709/‑89) | cpxR/yiiP | transcriptional regulator in 2‑component system/putative transport system permease protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base . (81/117); minor base G (5/4); total (86/121) |
| Fisher's exact test for biased strand distribution p-value = 4.94e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.79e-01 |
Only 100 of 233 total aligned reads displayed.
CTATTGAGTAGTAGCAACTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTATTTA > NC_000913/4103868‑4104049
|
cTATTGAGTAGTAGCAACTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGGt > 1:3607886/1‑93 (MQ=255)
cTATTGAGTAGTAGCAACTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGGt < 2:4614212/93‑1 (MQ=255)
cTATTGAGTAGTAGCAACTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGGt < 1:5278166/93‑1 (MQ=255)
tATTGAGTAGTAGCAACTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGGtt > 1:2520240/1‑93 (MQ=255)
aTTGAGTAGTAGCAACTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGGttt > 1:3685427/1‑93 (MQ=255)
ttGAGTAGTAGCAACTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGGtttt < 2:162320/93‑1 (MQ=255)
ttGAGTAGTAGCAACTCACGTTCCCAGTAGTAAACCCTGTGTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGCGGGGGtgtt > 1:229216/1‑93 (MQ=255)
gtagtaGCAACTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGGttttttta < 1:5590971/93‑2 (MQ=255)
tagtagCAACTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGGtttttttat < 1:5663775/93‑3 (MQ=255)
cAACTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCaa > 1:1752258/1‑93 (MQ=255)
aCTCACGTTCCCAGTAGTAATCCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAAtt < 2:4909998/93‑1 (MQ=255)
aCTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAAtt > 2:2933404/1‑93 (MQ=255)
aCTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAAtt < 1:4329479/93‑1 (MQ=255)
cTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAAttt > 2:5826136/1‑93 (MQ=255)
cTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAAttt < 2:857093/93‑1 (MQ=255)
cTCACGTTCACAGTAGTAAACCCTGTTTTCGTTGCCATAGACACCATCCCTGTCTTCCCCCGCATGATGTGGGGG‑TTTTTTTATCCTCAAttt < 2:2360427/93‑1 (MQ=255)
tCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTg < 2:6122402/93‑1 (MQ=255)
tCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTg > 1:2850302/1‑93 (MQ=255)
cACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAAttttc > 2:4816625/1‑91 (MQ=255)
aCGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGGGTTTTTTT‑TTCTCAATTTGcc > 2:68313/1‑93 (MQ=255)
aCGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGcc > 2:934509/1‑93 (MQ=255)
cGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCct < 1:5043456/93‑1 (MQ=255)
gTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCctg > 2:4193774/1‑93 (MQ=255)
tCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCctgct < 2:3407638/93‑1 (MQ=255)
ccAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCtgctgc < 2:17623/93‑1 (MQ=255)
ccAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCtgctgc < 2:1024281/93‑1 (MQ=255)
ccAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCtgctgc < 2:5851665/93‑1 (MQ=255)
cAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTgctgct < 1:3238188/93‑1 (MQ=255)
cAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTgctgct > 2:1323570/1‑93 (MQ=255)
gtagtaAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTa < 1:1838289/93‑1 (MQ=255)
tagtaAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTaa < 2:3854545/93‑1 (MQ=255)
agtaAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAAt < 1:3286277/93‑1 (MQ=255)
agtaAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAAt > 1:3717372/1‑93 (MQ=255)
gtaAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATg < 1:4388865/93‑1 (MQ=255)
gtaAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATg > 2:4098592/1‑93 (MQ=255)
gtaAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATg > 2:5192547/1‑93 (MQ=255)
gtaAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATg > 2:2008046/1‑93 (MQ=255)
aaCCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCAt < 2:5358056/93‑1 (MQ=255)
aCCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCAtt < 2:4429621/93‑1 (MQ=255)
aCCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCAtt < 2:1841637/93‑1 (MQ=255)
aCCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCAtt < 2:1183668/93‑1 (MQ=255)
cTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCa < 1:5496736/93‑1 (MQ=255)
cTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCa > 1:3933595/1‑93 (MQ=255)
tGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGAGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAg > 1:4362150/1‑93 (MQ=255)
gTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAga < 1:3358088/93‑1 (MQ=255)
tttCCTTGCGATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAgatg < 2:6075258/93‑1 (MQ=255)
tCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAgatgat < 1:1223332/93‑1 (MQ=255)
tCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGATGCTTAATGCATTGCAgatgat > 2:4126895/1‑93 (MQ=255)
ccTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGAtt < 1:6066291/93‑1 (MQ=255)
ccTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGAtt > 2:580280/1‑93 (MQ=255)
cTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGAttt < 1:5745166/93‑1 (MQ=255)
cTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑GTTTTTTATCCTCAATTTGCCTGCTGCTTCATGCCTTGCAGATGAttt > 2:2969318/1‑93 (MQ=255)
gCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCt > 1:268721/1‑93 (MQ=255)
cATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTc < 2:5088415/93‑1 (MQ=255)
cATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTc < 2:5474837/93‑1 (MQ=255)
tAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCg < 1:2084583/93‑1 (MQ=255)
aGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGt < 1:1099894/93‑1 (MQ=255)
aGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGt < 1:4261308/93‑1 (MQ=255)
gACACCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGtt < 2:3217715/93‑1 (MQ=255)
acacCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTta < 2:2021593/93‑1 (MQ=255)
acacCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTta < 1:2466059/93‑1 (MQ=255)
acacCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTta < 2:5409196/93‑1 (MQ=255)
cacCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTtat < 2:2872785/93‑1 (MQ=255)
cacCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTtat < 2:3946017/93‑1 (MQ=255)
acCATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTtata < 1:4415242/93‑1 (MQ=255)
ccATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTTCAGATGATTTGCTTGCGTTATAc > 2:5935255/1‑93 (MQ=255)
ccATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATAc > 2:4780231/1‑93 (MQ=255)
ccATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATAc < 2:5591156/93‑1 (MQ=255)
cATCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACt < 2:4555532/93‑1 (MQ=255)
tCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAg < 1:2600300/93‑1 (MQ=255)
tCCCTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAg > 1:3997204/1‑93 (MQ=255)
cTGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGt < 1:4221941/93‑1 (MQ=255)
tGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTc < 2:4981417/93‑1 (MQ=255)
tGTCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTc < 1:3016960/93‑1 (MQ=255)
tGTCTTCCCCCACATGCTGTGGGGG‑GTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTc > 1:4692359/1‑93 (MQ=255)
tCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAg > 1:5825767/1‑93 (MQ=255)
tCTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAg > 2:5647542/1‑93 (MQ=255)
cTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGt < 1:5324976/93‑1 (MQ=255)
cTTCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGt < 1:93430/93‑1 (MQ=255)
ttCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGtt < 1:6189672/93‑1 (MQ=255)
ttCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGtt < 1:1487652/93‑1 (MQ=255)
tCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTg > 2:1953910/1‑93 (MQ=255)
tCCCCCACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCACATGATTTGCTTCCGTTATACTAGCGTCAGTTg > 1:67861/1‑93 (MQ=255)
cccccACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGa < 2:2776727/93‑1 (MQ=255)
cccccACATGCTGTGGGGG‑GTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGa > 2:5416751/1‑93 (MQ=255)
cccACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATa < 1:3042366/93‑1 (MQ=255)
ccACATGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAg < 2:3596330/93‑1 (MQ=255)
cacaTGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGc < 1:2030596/93‑1 (MQ=255)
cacaTGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGc > 1:6000687/1‑93 (MQ=255)
acaTGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCg > 2:1394608/1‑93 (MQ=255)
caTGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCgg < 2:3457028/93‑1 (MQ=255)
tGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGa > 1:1066180/1‑93 (MQ=255)
tGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGa < 1:1553024/93‑1 (MQ=255)
tGCTGTGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGa < 1:5922315/93‑1 (MQ=255)
tGCTGTGGGGG‑CTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGa < 1:246952/93‑1 (MQ=255)
tgtgGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTa > 2:2519611/1‑93 (MQ=255)
gtgGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTAt > 1:4894960/1‑93 (MQ=255)
gtggggGTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTAt < 1:3789734/91‑1 (MQ=255)
ggggGTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTAttt > 1:306706/1‑93 (MQ=255)
ggggGTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTAttt > 1:5364876/1‑93 (MQ=255)
|
CTATTGAGTAGTAGCAACTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTATTTA > NC_000913/4103868‑4104049
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TAGTAGCAACTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTATTTATGAATCAATC > NC_000913/4103876‑4104059
|
TAGTAGCAACTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATC < SRR4302533.5697994/94‑1 (MQ=60)
TAGCAACTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTC > SRR4302533.3850102/1‑94 (MQ=60)
GCAACTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAA > SRR4302533.1762931/1‑94 (MQ=60)
GCAACTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAA < SRR4302533.5663561/94‑1 (MQ=60)
CAACTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAAT < SRR4302533.4032370/94‑1 (MQ=60)
AACTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCTATT > SRR4302533.4508411/1‑94 (MQ=60)
AACTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATT < SRR4302533.5756908/94‑1 (MQ=60)
ACTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTT < SRR4302533.248324/94‑1 (MQ=60)
ACTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTT < SRR4302533.4355563/94‑1 (MQ=60)
ACTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTT > SRR4302533.2973034/1‑94 (MQ=60)
CTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTG > SRR4302533.2867838/1‑94 (MQ=60)
ACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCT > SRR4302533.3727971/1‑94 (MQ=60)
CGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACCTGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTG > SRR4302533.1542370/1‑94 (MQ=60)
CGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTG > SRR4302533.5040973/1‑94 (MQ=60)
CGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTG < SRR4302533.5073979/94‑1 (MQ=60)
CGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTG < SRR4302533.2613195/94‑1 (MQ=60)
GTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGC < SRR4302533.5510378/94‑1 (MQ=60)
TTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCT < SRR4302533.6177177/94‑1 (MQ=60)
TCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCCCATGCTGTTGGGGGTTTTTTTTtctccatttttctgctg > SRR4302533.5348576/1‑77 (MQ=60)
TCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTG < SRR4302533.5893923/94‑1 (MQ=60)
CCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGC < SRR4302533.1811438/94‑1 (MQ=60)
CCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGC > SRR4302533.6265531/1‑94 (MQ=60)
CAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTT < SRR4302533.3258141/94‑1 (MQ=60)
AGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCTCACCTGCTG‑TGGGGGGTTTTTTT‑TCCTCGATTTGGCTGCTGCTTA > SRR4302533.1173985/1‑94 (MQ=60)
GTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAA < SRR4302533.1849500/94‑1 (MQ=60)
TAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAAT > SRR4302533.3740190/1‑94 (MQ=60)
AGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATG < SRR4302533.3306565/94‑1 (MQ=60)
GTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGC < SRR4302533.3297348/94‑1 (MQ=60)
GTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGC < SRR4302533.4415363/94‑1 (MQ=60)
AACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATT < SRR4302533.3377384/94‑1 (MQ=60)
ACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTG < SRR4302533.1939574/94‑1 (MQ=60)
CCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCA > SRR4302533.3957606/1‑94 (MQ=60)
CCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑GTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCA > SRR4302533.3555560/1‑94 (MQ=60)
CTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAG < SRR4302533.6010626/94‑1 (MQ=60)
CTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAG > SRR4302533.4050915/1‑94 (MQ=60)
CTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAG < SRR4302533.5529890/94‑1 (MQ=60)
CTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑AGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAG > SRR4302533.4388481/1‑94 (MQ=60)
GTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGAT < SRR4302533.4369580/94‑1 (MQ=60)
GTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGAT < SRR4302533.3378839/94‑1 (MQ=60)
GTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGAT < SRR4302533.1872790/94‑1 (MQ=60)
GTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGAT < SRR4302533.5424963/94‑1 (MQ=60)
GTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGAT < SRR4302533.4813089/94‑1 (MQ=60)
GTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGAT < SRR4302533.4279604/94‑1 (MQ=60)
GTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGAT < SRR4302533.4666647/94‑1 (MQ=60)
TCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATT < SRR4302533.1230669/94‑1 (MQ=60)
CCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCCATTTGCCTGCTGCTTAATGCATTGCAGATGATTT > SRR4302533.2044598/1‑94 (MQ=60)
CCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTT < SRR4302533.3978111/94‑1 (MQ=60)
CCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTT < SRR4302533.6103005/94‑1 (MQ=60)
CCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTT < SRR4302533.1092020/94‑1 (MQ=60)
CTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTG < SRR4302533.5741991/94‑1 (MQ=60)
CTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTG < SRR4302533.5779834/94‑1 (MQ=60)
TTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGC > SRR4302533.6058532/1‑94 (MQ=60)
TGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCT > SRR4302533.270351/1‑94 (MQ=60)
GCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTT > SRR4302533.2561057/1‑94 (MQ=60)
CCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTC < SRR4302533.44330/94‑1 (MQ=60)
CCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑GTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTC > SRR4302533.26378/1‑94 (MQ=60)
CATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCC > SRR4302533.5260498/1‑94 (MQ=60)
ATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑GTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCG > SRR4302533.4321082/1‑94 (MQ=60)
TAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGT < SRR4302533.2097419/94‑1 (MQ=60)
AGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTT < SRR4302533.1554773/94‑1 (MQ=60)
AGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTT < SRR4302533.1106413/94‑1 (MQ=60)
AGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTT < SRR4302533.4286985/94‑1 (MQ=60)
GACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTA > SRR4302533.1327049/1‑94 (MQ=60)
ACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTAT < SRR4302533.2481271/94‑1 (MQ=60)
CCCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATAC < SRR4302533.314252/94‑1 (MQ=60)
ACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATAC < SRR4302533.4441904/94‑1 (MQ=60)
ATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAG > SRR4302533.4021544/1‑94 (MQ=60)
ATCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAG < SRR4302533.3042639/94‑1 (MQ=60)
TCCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGC < SRR4302533.2616278/94‑1 (MQ=60)
CCCTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCG < SRR4302533.6238719/94‑1 (MQ=60)
CTGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTC < SRR4302533.4247470/94‑1 (MQ=60)
CTGTCTTCCCCCACATGCTG‑TGGGGG‑GTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTC > SRR4302533.4720798/1‑94 (MQ=60)
TGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCA < SRR4302533.3035414/94‑1 (MQ=60)
TGTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCA < SRR4302533.5844240/94‑1 (MQ=60)
GTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAG < SRR4302533.2738852/94‑1 (MQ=60)
GTCTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAG > SRR4302533.5860968/1‑94 (MQ=60)
CTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTT > SRR4302533.3775361/1‑94 (MQ=60)
CTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTT < SRR4302533.94019/94‑1 (MQ=60)
CTTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTT < SRR4302533.5356889/94‑1 (MQ=60)
TTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTG < SRR4302533.1496625/94‑1 (MQ=60)
TTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTG < SRR4302533.6226815/94‑1 (MQ=60)
TTCCCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCACATGATTTGCTTCCGTTATACTAGCGTCAGTTG > SRR4302533.68303/1‑94 (MQ=60)
CCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATA > SRR4302533.886833/1‑94 (MQ=60)
CCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATA < SRR4302533.3695589/94‑1 (MQ=60)
CCCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATA < SRR4302533.220879/94‑1 (MQ=60)
CCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAG < SRR4302533.3133016/94‑1 (MQ=60)
CCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAG < SRR4302533.4396466/94‑1 (MQ=60)
CCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAG < SRR4302533.3060988/94‑1 (MQ=60)
CCCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAG > SRR4302533.3748029/1‑94 (MQ=60)
CCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGC > SRR4302533.6037037/1‑94 (MQ=60)
CCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGC < SRR4302533.4371576/94‑1 (MQ=60)
CCACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGC < SRR4302533.1613304/94‑1 (MQ=60)
CACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCG < SRR4302533.2043129/94‑1 (MQ=60)
ACATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGG > SRR4302533.5988742/1‑94 (MQ=60)
ATGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGA > SRR4302533.1072443/1‑94 (MQ=60)
TGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAG < SRR4302533.5958112/94‑1 (MQ=60)
TGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAG < SRR4302533.1562375/94‑1 (MQ=60)
TGCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAG < SRR4302533.3077621/94‑1 (MQ=60)
TGCTG‑TGGGGG‑CTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAG < SRR4302533.248479/94‑1 (MQ=60)
GCTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGT < SRR4302533.5358248/94‑1 (MQ=60)
CTG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTA > SRR4302533.5256603/1‑94 (MQ=60)
TG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTAT > SRR4302533.3618987/1‑94 (MQ=60)
TG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTAT < SRR4302533.241602/94‑1 (MQ=60)
TG‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTAT > SRR4302533.4924625/1‑94 (MQ=60)
G‑TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTATT < SRR4302533.3812939/94‑1 (MQ=60)
gtgggtgTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTATT < SRR4302533.6275967/87‑1 (MQ=60)
TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTATTT > SRR4302533.5397104/1‑94 (MQ=60)
TGGGGG‑TTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTATTT > SRR4302533.308582/1‑94 (MQ=60)
GGGGGTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTATTTA < SRR4302533.293554/94‑1 (MQ=60)
GGTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTATTTATGA > SRR4302533.5828840/1‑94 (MQ=60)
GGTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTATTTATGA < SRR4302533.625765/94‑1 (MQ=60)
TTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTATTTATGAATC < SRR4302533.4160199/94‑1 (MQ=60)
TTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTATTTATGAATCA > SRR4302533.1487841/1‑94 (MQ=60)
TTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTATTTATGAATCA > SRR4302533.1790322/1‑94 (MQ=60)
TTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTATTTATGAATCAA > SRR4302533.156029/1‑94 (MQ=60)
TTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTATTTATGAATCAA < SRR4302533.883792/94‑1 (MQ=60)
TTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTATTTATGAATCAAT < SRR4302533.4285471/94‑1 (MQ=60)
TTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTATTTATGAATCAATC > SRR4302533.2675262/1‑94 (MQ=60)
TTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTATTTATGAATCAATC > SRR4302533.4069938/1‑94 (MQ=60)
TTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTATTTATGAATCAATC < SRR4302533.2501081/94‑1 (MQ=60)
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TAGTAGCAACTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGCTG‑TGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGATAGCGGGAGTATTTATGAATCAATC > NC_000913/4103876‑4104059
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
