Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,161,702	C→G	A162G (GCA→GGA)	btuB →	BtuB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,161,702	0	C	G	100.0%	744.1 / NA	227	A162G (GCA→GGA)	btuB	BtuB
Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (108/119); total (108/119)

Only 100 of 237 total aligned reads displayed.

GGCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGCAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGATT  >  NC_000913/4161612‑4161791

ggCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTcaggag                                                                                         <  2:1699967/93‑1 (MQ=255)

ggCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTcaggag                                                                                         >  2:6057460/1‑93 (MQ=255)

ggCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTcaggag                                                                                         >  1:384878/1‑93 (MQ=255)

  ccGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAggg                                                                                       <  2:3881154/93‑1 (MQ=255)

   cgcgCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGt                                                                                      <  1:1008537/93‑1 (MQ=255)

     cgcTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTgg                                                                                    >  2:4901856/1‑93 (MQ=255)

     cgcTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTgg                                                                                    <  1:197617/93‑1 (MQ=255)

      gcTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGCggg                                                                                   >  2:5246655/1‑93 (MQ=255)

       cTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTgggg                                                                                  <  2:170754/93‑1 (MQ=255)

       cTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTgggg                                                                                  >  1:4410302/1‑93 (MQ=255)

       cTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTgggg                                                                                  >  1:3480171/1‑93 (MQ=255)

        tCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGa                                                                                 <  2:809669/93‑1 (MQ=255)

         ccGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGaa                                                                                >  2:2587483/1‑93 (MQ=255)

          cGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCGGGAGGGTGGGGAAg                                                                               <  1:5889017/93‑1 (MQ=255)

          cGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAg                                                                               <  2:4251226/93‑1 (MQ=255)

            cTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCa                                                                             >  1:258621/1‑93 (MQ=255)

            cTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCa                                                                             >  1:5145403/1‑93 (MQ=255)

              gTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAAt                                                                           >  1:179927/1‑93 (MQ=255)

               tttATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATa                                                                          <  2:756393/93‑1 (MQ=255)

                ttATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAg                                                                         >  2:5450252/1‑93 (MQ=255)

                 tATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGt                                                                        >  2:3124666/1‑93 (MQ=255)

                 tATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGt                                                                        <  1:3196714/93‑1 (MQ=255)

                 tATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGt                                                                        >  2:1053226/1‑93 (MQ=255)

                 tATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGt                                                                        >  1:1895746/1‑93 (MQ=255)

                  aTGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGtt                                                                       <  2:3549381/93‑1 (MQ=255)

                   tGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTa                                                                      <  1:3533975/93‑1 (MQ=255)

                   tGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTa                                                                      <  1:70662/93‑1 (MQ=255)

                     gtgccGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATc                                                                    <  1:3049627/90‑1 (MQ=255)

                     gTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATc                                                                    <  1:6108172/93‑1 (MQ=255)

                     gTTCCGATGAAATAGGCGGGTTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATc                                                                    <  2:2409351/93‑1 (MQ=255)

                      ttCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCa                                                                   <  2:4738837/93‑1 (MQ=255)

                       tCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAg                                                                  <  2:2494876/93‑1 (MQ=255)

                         cGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGaa                                                                <  1:992201/93‑1 (MQ=255)

                          gATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAAc                                                               >  1:4952576/1‑93 (MQ=255)

                            tGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTa                                                             >  1:1392127/1‑93 (MQ=255)

                             gCAATAGGCGGGGGGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTat                                                            >  2:5539764/1‑93 (MQ=255)

                              cAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTatg                                                           >  1:5961825/1‑93 (MQ=255)

                               aaTAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTatga                                                          >  2:2295097/1‑93 (MQ=255)

                                aTAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTatgat                                                         <  1:4693485/93‑1 (MQ=255)

                                  aGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGt                                                       <  1:3469683/93‑1 (MQ=255)

                                    gCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGtct                                                     <  2:4655917/93‑1 (MQ=255)

                                      ggggTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGGTATCCGAACTATGATctctct                                                   >  1:2855843/1‑93 (MQ=255)

                                        ggtggtGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTAc                                                 >  1:779043/1‑93 (MQ=255)

                                        ggtggtGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGACGTCTCTAc                                                 <  1:1578267/93‑1 (MQ=255)

                                          tggtgAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACgc                                               >  2:1597576/1‑93 (MQ=255)

                                           ggtgAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACgca                                              <  2:6024838/93‑1 (MQ=255)

                                           ggtgAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACgca                                              >  1:3309227/1‑93 (MQ=255)

                                             tgAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACgcagc                                            <  2:1225584/93‑1 (MQ=255)

                                              gAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACgcagca                                           >  2:2271229/1‑93 (MQ=255)

                                                atatCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGcaac                                         <  2:5158122/93‑1 (MQ=255)

                                                 tatCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGcaaca                                        >  1:5481425/1‑93 (MQ=255)

                                                 tatCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGcaaca                                        >  2:3934967/1‑93 (MQ=255)

                                                   tcatcaCGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCaacaac                                      <  1:5301727/93‑1 (MQ=255)

                                                   tcatcaCGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCaacaac                                      <  1:2952779/93‑1 (MQ=255)

                                                     atcaCGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTg                                    <  1:2347053/93‑1 (MQ=255)

                                                     atcaCGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTg                                    <  1:6205168/93‑1 (MQ=255)

                                                     atcaCGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTg                                    <  1:2391961/93‑1 (MQ=255)

                                                      tcaCGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTgg                                   <  1:5822666/93‑1 (MQ=255)

                                                      tcaCGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTgg                                   <  2:5668977/93‑1 (MQ=255)

                                                        acgacgCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTgggg                                 <  2:4135677/93‑1 (MQ=255)

                                                         cgacgCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTggggg                                <  2:572884/93‑1 (MQ=255)

                                                          gacgCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGa                               >  2:3677677/1‑93 (MQ=255)

                                                           acgCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGAt                              >  2:1157814/1‑93 (MQ=255)

                                                            cgcgcgATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATa                             >  1:2117652/1‑93 (MQ=255)

                                                            cgcacgATGAACCCGGAACGAAAATTTCAGGAGGGTGGGAAAGCAATAGTAAACAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATa                             <  1:6294933/93‑1 (MQ=255)

                                                             gcgcgATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATaa                            <  1:899286/93‑1 (MQ=255)

                                                             gcgcgATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATaa                            <  1:5075238/93‑1 (MQ=255)

                                                             gcgcgATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATaa                            <  1:2745985/93‑1 (MQ=255)

                                                             gcgcgATGAACCCGGAACGGAAATTTCAGGAGCGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATaa                            <  2:5180023/93‑1 (MQ=255)

                                                              cgcgATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAg                           >  1:370760/1‑93 (MQ=255)

                                                                cgATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGac                         <  2:4710214/93‑1 (MQ=255)

                                                                cgATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGac                         <  2:664081/93‑1 (MQ=255)

                                                                cgATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGac                         <  1:5728342/93‑1 (MQ=255)

                                                                 gATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGaca                        <  2:871091/93‑1 (MQ=255)

                                                                  aTGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAATCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGacac                       <  1:1553399/93‑1 (MQ=255)

                                                                  aTGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGacac                       >  1:2835724/1‑93 (MQ=255)

                                                                    gAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACgg                     <  1:5761035/93‑1 (MQ=255)

                                                                      aCCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGt                   <  1:1314531/93‑1 (MQ=255)

                                                                      aCCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGt                   >  2:1958208/1‑93 (MQ=255)

                                                                       cccGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTa                  >  1:4289110/1‑93 (MQ=255)

                                                                        ccGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTaa                 >  2:882142/1‑93 (MQ=255)

                                                                        ccGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTaa                 <  1:2553235/93‑1 (MQ=255)

                                                                         cggaacggaaATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAAc                >  2:3148950/1‑93 (MQ=255)

                                                                         cggaacggaaATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAAc                >  2:2956399/1‑93 (MQ=255)

                                                                         cggaacggaaATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAAc                <  1:2468669/93‑1 (MQ=255)

                                                                         cggaacggaaATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAAc                <  2:3442896/93‑1 (MQ=255)

                                                                           gaacggaaATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGc              >  2:2725179/1‑93 (MQ=255)

                                                                            aacggaaATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCt             >  1:5296772/1‑93 (MQ=255)

                                                                             acggaaATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTg            <  1:4728290/93‑1 (MQ=255)

                                                                               ggaaATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGtt          >  2:5082791/1‑93 (MQ=255)

                                                                               ggaaATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGtt          <  2:2874908/93‑1 (MQ=255)

                                                                               ggaaATTTCAGGAGGGTGGAGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGtt          <  1:3342280/93‑1 (MQ=255)

                                                                                gaaATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTg         >  2:1552753/1‑93 (MQ=255)

                                                                                 aaaTTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTgg        <  2:3317548/93‑1 (MQ=255)

                                                                                  aaTTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTggg       >  1:4995508/1‑93 (MQ=255)

                                                                                   aTTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGc      <  1:3898120/93‑1 (MQ=255)

                                                                                      tCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGAt   <  2:1459101/93‑1 (MQ=255)

                                                                                      tCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGAt   <  2:5823129/93‑1 (MQ=255)

                                                                                      tCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGAt   <  2:405868/93‑1 (MQ=255)

                                                                                      tCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGAt   >  2:4628463/1‑93 (MQ=255)

GGCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGCAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGATT  >  NC_000913/4161612‑4161791

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTGGGCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGCAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGATTAT  >  NC_000913/4161609‑4161793

GTGGGCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGG                                                                                             >  SRR4302533.3390312/1‑94 (MQ=60)

GTGGGCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGG                                                                                             <  SRR4302533.1335894/94‑1 (MQ=60)

GTGGGCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGG                                                                                             <  SRR4302533.4191868/94‑1 (MQ=60)

GTGGGCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGG                                                                                             <  SRR4302533.1481505/94‑1 (MQ=60)

 TGGGCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGA                                                                                            <  SRR4302533.5471288/94‑1 (MQ=60)

  GGGCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAG                                                                                           <  SRR4302533.5573701/94‑1 (MQ=60)

  GGGCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAG                                                                                           >  SRR4302533.387201/1‑94 (MQ=60)

   GGCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGG                                                                                          <  SRR4302533.3508090/94‑1 (MQ=60)

     GCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGACCCCGGAACGGAAATTTCAGGAGGGT                                                                                        <  SRR4302533.2677379/94‑1 (MQ=60)

      CGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTG                                                                                       <  SRR4302533.1014436/94‑1 (MQ=60)

       GCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGG                                                                                      <  SRR4302533.1322870/94‑1 (MQ=60)

        CGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGG                                                                                     <  SRR4302533.198862/94‑1 (MQ=60)

         GCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGG                                                                                    >  SRR4302533.3501642/1‑94 (MQ=60)

         GCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGG                                                                                    >  SRR4302533.4436937/1‑94 (MQ=60)

          CTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGA                                                                                   <  SRR4302533.3419526/94‑1 (MQ=60)

          CTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGA                                                                                   >  SRR4302533.1939678/1‑94 (MQ=60)

          CTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGAGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGA                                                                                   >  SRR4302533.5176698/1‑94 (MQ=60)

           TCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAA                                                                                  >  SRR4302533.5467585/1‑94 (MQ=60)

           TCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAA                                                                                  >  SRR4302533.2465211/1‑94 (MQ=60)

             CGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCGGGAGGGTGGGGAAGC                                                                                <  SRR4302533.5924597/94‑1 (MQ=60)

             CGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGC                                                                                <  SRR4302533.1476560/94‑1 (MQ=60)

              GCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCA                                                                               >  SRR4302533.260194/1‑94 (MQ=60)

              GCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCA                                                                               >  SRR4302533.5176502/1‑94 (MQ=60)

              GCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCA                                                                               >  SRR4302533.4726313/1‑94 (MQ=60)

               CTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAA                                                                              >  SRR4302533.5335654/1‑94 (MQ=60)

                TGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAAT                                                                             >  SRR4302533.181051/1‑94 (MQ=60)

                TGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAAT                                                                             >  SRR4302533.6250689/1‑94 (MQ=60)

                  TTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAG                                                                           <  SRR4302533.5058442/94‑1 (MQ=60)

                  TTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAG                                                                           >  SRR4302533.3014581/1‑94 (MQ=60)

                   TTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGT                                                                          >  SRR4302533.5949389/1‑94 (MQ=60)

                   TTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGT                                                                          >  SRR4302533.1907317/1‑94 (MQ=60)

                    TATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTT                                                                         >  SRR4302533.5835796/1‑94 (MQ=60)

                    TATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTT                                                                         <  SRR4302533.3216385/94‑1 (MQ=60)

                     ATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTA                                                                        >  SRR4302533.2634864/1‑94 (MQ=60)

                      TGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTAT                                                                       <  SRR4302533.3555751/94‑1 (MQ=60)

                      TGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTAT                                                                       <  SRR4302533.71119/94‑1 (MQ=60)

                        GTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCA                                                                     <  SRR4302533.6145049/94‑1 (MQ=60)

                        GTGCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCA                                                                     <  SRR4302533.3068293/94‑1 (MQ=60)

                            CGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAAC                                                                 >  SRR4302533.4982572/1‑94 (MQ=60)

                            CGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAAC                                                                 <  SRR4302533.5151275/94‑1 (MQ=60)

                            CGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAAC                                                                 <  SRR4302533.998002/94‑1 (MQ=60)

                             GATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACT                                                                >  SRR4302533.5328593/1‑94 (MQ=60)

                             GATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACT                                                                <  SRR4302533.3634639/94‑1 (MQ=60)

                             GATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATAAGAACT                                                                >  SRR4302533.1787648/1‑94 (MQ=60)

                              ATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTA                                                               >  SRR4302533.2351097/1‑94 (MQ=60)

                              ATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTA                                                               <  SRR4302533.6135524/94‑1 (MQ=60)

                              ATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTA                                                               >  SRR4302533.1400515/1‑94 (MQ=60)

                               TGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTAT                                                              <  SRR4302533.4622246/94‑1 (MQ=60)

                               TGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTAT                                                              <  SRR4302533.3865789/94‑1 (MQ=60)

                                GCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATG                                                             >  SRR4302533.5997893/1‑94 (MQ=60)

                                   ATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATG                                                          <  SRR4302533.4721927/94‑1 (MQ=60)

                                   ATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATG                                                          <  SRR4302533.844529/94‑1 (MQ=60)

                                    TAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGT                                                         <  SRR4302533.2453880/94‑1 (MQ=60)

                                     AGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTC                                                        <  SRR4302533.3491102/94‑1 (MQ=60)

                                     AGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTC                                                        <  SRR4302533.2872017/94‑1 (MQ=60)

                                     AGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTC                                                        <  SRR4302533.3214849/94‑1 (MQ=60)

                                     AGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTC                                                        <  SRR4302533.5204547/94‑1 (MQ=60)

                                     AGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTC                                                        <  SRR4302533.6137414/94‑1 (MQ=60)

                                      GGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAATGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCT                                                       >  SRR4302533.4476203/1‑94 (MQ=60)

                                        CGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGGTATCCGAACTATGATCTCTCT                                                     >  SRR4302533.2873416/1‑94 (MQ=60)

                                         GGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTA                                                    <  SRR4302533.320797/94‑1 (MQ=60)

                                         GGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTA                                                    <  SRR4302533.5788835/94‑1 (MQ=60)

                                          GGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTAC                                                   >  SRR4302533.783630/1‑94 (MQ=60)

                                           GGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGACGTCTCTACG                                                  <  SRR4302533.1587771/94‑1 (MQ=60)

                                             TGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAATCAATAGTTATCAGAACTATGATGTCTCTACGCA                                                <  SRR4302533.2377439/94‑1 (MQ=60)

                                             TGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCA                                                >  SRR4302533.3329661/1‑94 (MQ=60)

                                               GTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGC                                              >  SRR4302533.683111/1‑94 (MQ=60)

                                               GTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGC                                              >  SRR4302533.2179954/1‑94 (MQ=60)

                                                 GAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAA                                            >  SRR4302533.5003548/1‑94 (MQ=60)

                                                  AATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAAC                                           <  SRR4302533.4256755/94‑1 (MQ=60)

                                                   ATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACA                                          >  SRR4302533.5514471/1‑94 (MQ=60)

                                                     ATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAAC                                        >  SRR4302533.3909937/1‑94 (MQ=60)

                                                     ATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAAC                                        >  SRR4302533.945827/1‑94 (MQ=60)

                                                     ATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAAC                                        >  SRR4302533.1571003/1‑94 (MQ=60)

                                                     ATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAAC                                        >  SRR4302533.3378945/1‑94 (MQ=60)

                                                      TCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACT                                       <  SRR4302533.2970834/94‑1 (MQ=60)

                                                      TCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACT                                       <  SRR4302533.5333489/94‑1 (MQ=60)

                                                        ATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGG                                     <  SRR4302533.6242382/94‑1 (MQ=60)

                                                        ATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGG                                     <  SRR4302533.2406726/94‑1 (MQ=60)

                                                        ATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGG                                     >  SRR4302533.3277870/1‑94 (MQ=60)

                                                        ATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGG                                     <  SRR4302533.2361577/94‑1 (MQ=60)

                                                         TCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGG                                    <  SRR4302533.1851953/94‑1 (MQ=60)

                                                         TCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGG                                    >  SRR4302533.858929/1‑94 (MQ=60)

                                                         TCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGG                                    <  SRR4302533.5857836/94‑1 (MQ=60)

                                                          CACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGG                                   <  SRR4302533.1465504/94‑1 (MQ=60)

                                                            CGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGA                                 >  SRR4302533.5906060/1‑94 (MQ=60)

                                                            CGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGA                                 >  SRR4302533.432505/1‑94 (MQ=60)

                                                            CGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGA                                 >  SRR4302533.2122489/1‑94 (MQ=60)

                                                             GACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGAT                                <  SRR4302533.2581354/94‑1 (MQ=60)

                                                             GACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGAT                                >  SRR4302533.1309949/1‑94 (MQ=60)

                                                              ACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATA                               >  SRR4302533.2130713/1‑94 (MQ=60)

                                                               CGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAA                              >  SRR4302533.3497728/1‑94 (MQ=60)

                                                               CGCACGATGAACCCGGAACGAAAATTTCAGGAGGGTGGGAAAGCAATAGTAAACAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAA                              <  SRR4302533.6332463/94‑1 (MQ=60)

                                                                GCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAG                             <  SRR4302533.5105917/94‑1 (MQ=60)

                                                                GCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAG                             <  SRR4302533.904562/94‑1 (MQ=60)

                                                                GCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAG                             <  SRR4302533.6325702/94‑1 (MQ=60)

                                                                GCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAG                             <  SRR4302533.1680794/94‑1 (MQ=60)

                                                                GCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAG                             >  SRR4302533.372998/1‑94 (MQ=60)

                                                                GCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAG                             <  SRR4302533.2762821/94‑1 (MQ=60)

                                                                   CGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACA                          <  SRR4302533.5762934/94‑1 (MQ=60)

                                                                    GATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACAC                         >  SRR4302533.2853172/1‑94 (MQ=60)

                                                                    GATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACAC                         <  SRR4302533.408630/94‑1 (MQ=60)

                                                                     ATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAATCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACG                        <  SRR4302533.1562754/94‑1 (MQ=60)

                                                                     ATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACG                        <  SRR4302533.766636/94‑1 (MQ=60)

                                                                       GAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGG                      <  SRR4302533.5795796/94‑1 (MQ=60)

                                                                       GAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGG                      <  SRR4302533.2877127/94‑1 (MQ=60)

                                                                       GAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGG                      <  SRR4302533.3336460/94‑1 (MQ=60)

                                                                         ACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTA                    <  SRR4302533.1322417/94‑1 (MQ=60)

                                                                         ACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTA                    >  SRR4302533.4314903/1‑94 (MQ=60)

                                                                          CCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAA                   >  SRR4302533.6224251/1‑94 (MQ=60)

                                                                           CCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAAC                  <  SRR4302533.2568946/94‑1 (MQ=60)

                                                                            CGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACG                 <  SRR4302533.1848389/94‑1 (MQ=60)

                                                                            CGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACG                 <  SRR4302533.2483895/94‑1 (MQ=60)

                                                                              GAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCT               >  SRR4302533.5854789/1‑94 (MQ=60)

                                                                              GAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCT               >  SRR4302533.5328495/1‑94 (MQ=60)

                                                                               AACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGCACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGCAACGCTG              >  SRR4302533.4926485/1‑94 (MQ=60)

                                                                                ACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGT             <  SRR4302533.4756955/94‑1 (MQ=60)

                                                                                  GGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTG           <  SRR4302533.5381996/94‑1 (MQ=60)

                                                                                  GGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTG           <  SRR4302533.5003206/94‑1 (MQ=60)

                                                                                  GGAAATTTCAGGAGGGTGGAGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTG           <  SRR4302533.3362938/94‑1 (MQ=60)

                                                                                   GAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGG          <  SRR4302533.3571044/94‑1 (MQ=60)

                                                                                    AAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGG         <  SRR4302533.2847247/94‑1 (MQ=60)

                                                                                    AAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGG         >  SRR4302533.5025792/1‑94 (MQ=60)

                                                                                     AATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGC        >  SRR4302533.5628128/1‑94 (MQ=60)

                                                                                      ATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCG       <  SRR4302533.3921903/94‑1 (MQ=60)

                                                                                        TTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGAT     <  SRR4302533.2495574/94‑1 (MQ=60)

                                                                                         TCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGATT    >  SRR4302533.289105/1‑94 (MQ=60)

                                                                                           AGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGATTAT  <  SRR4302533.829252/94‑1 (MQ=60)

                                                                                           AGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGATTAT  <  SRR4302533.87849/94‑1 (MQ=60)

                                                                                           AGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGATTAT  >  SRR4302533.93436/1‑94 (MQ=60)

GTGGGCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGCAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGATTAT  >  NC_000913/4161609‑4161793

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`