Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,178,668	A→G	intergenic (+165/‑155)	rplL → / → rpoB	50S ribosomal subunit protein L7/L12/RNA polymerase beta subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,178,668	0	A	G	100.0%	849.5 / NA	264	intergenic (+165/‑155)	rplL/rpoB	50S ribosomal subunit protein L7/L12/RNA polymerase beta subunit
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (121/143); total (121/143)

Only 100 of 267 total aligned reads displayed.

TGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGACGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAAAT  >  NC_000913/4178578‑4178757

 ttAAGTCGCCATTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATTCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGt                                                                                        <  2:5289049/92‑1 (MQ=255)

 gTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGt                                                                                        <  1:1781314/93‑1 (MQ=255)

  tAAGCCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTc                                                                                       <  2:3817391/93‑1 (MQ=255)

   aaGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTcc                                                                                      <  2:2983013/93‑1 (MQ=255)

     ggCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGt                                                                                    <  2:1897871/93‑1 (MQ=255)

     ggCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGt                                                                                    >  2:2914232/1‑93 (MQ=255)

      gcgcCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGtt                                                                                   >  1:3303197/1‑93 (MQ=255)

       cgcCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTc                                                                                  <  1:602614/93‑1 (MQ=255)

       cgcCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTc                                                                                  <  2:147734/93‑1 (MQ=255)

        gcCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCt                                                                                 <  1:4237194/93‑1 (MQ=255)

         ccAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCtg                                                                                <  1:5166777/93‑1 (MQ=255)

          cAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCtgt                                                                               >  1:4035387/1‑93 (MQ=255)

          cAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCtgt                                                                               <  2:610865/93‑1 (MQ=255)

            gTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTgtgt                                                                             >  1:4295727/1‑93 (MQ=255)

            gTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTgtgt                                                                             <  2:2263547/93‑1 (MQ=255)

            gTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTgtgt                                                                             >  2:1420708/1‑93 (MQ=255)

              aGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTaa                                                                           >  1:145981/1‑93 (MQ=255)

               gCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTaaa                                                                          <  1:5607013/93‑1 (MQ=255)

                cGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAAt                                                                         <  1:1030683/93‑1 (MQ=255)

                cGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAAt                                                                         <  1:2843810/93‑1 (MQ=255)

                 gTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAAta                                                                        >  1:3398914/1‑92 (MQ=255)

                 gTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATc                                                                        >  2:3528686/1‑93 (MQ=255)

                  tttCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCg                                                                       >  2:1566207/1‑93 (MQ=255)

                  tttCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCg                                                                       >  2:5613829/1‑93 (MQ=255)

                   ttCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGc                                                                      >  1:2015114/1‑93 (MQ=255)

                     cacaCTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCaa                                                                    >  1:2598755/1‑93 (MQ=255)

                     cacaCTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCaa                                                                    <  1:6098888/93‑1 (MQ=255)

                      acacTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAAt                                                                   >  1:1603853/1‑93 (MQ=255)

                      acacTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAAt                                                                   >  1:1268122/1‑93 (MQ=255)

                        acTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGa                                                                 >  2:205471/1‑93 (MQ=255)

                         cTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGaa                                                                >  2:2100240/1‑93 (MQ=255)

                          tGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGCCAGGGCGTCCGTTCTGTGTAAATCGCAATGaaa                                                               <  1:2707913/93‑1 (MQ=255)

                           gTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGaaaa                                                              >  2:4633016/1‑92 (MQ=255)

                             ttGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATgg                                                            <  1:5093092/93‑1 (MQ=255)

                               gACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGtt                                                          >  1:5368024/1‑93 (MQ=255)

                                actactGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGttt                                                         >  1:1894540/1‑93 (MQ=255)

                                actactGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGttt                                                         >  2:5726476/1‑93 (MQ=255)

                                  tactGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTaa                                                       >  2:3583478/1‑93 (MQ=255)

                                  tactGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTaa                                                       >  2:4035552/1‑93 (MQ=255)

                                  tactGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGCGTAAATCGCAATGAAATGGTTTaa                                                       <  2:5305520/93‑1 (MQ=255)

                                   actGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAg                                                      >  2:737562/1‑93 (MQ=255)

                                    ctgctgTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGc                                                     <  2:4288311/93‑1 (MQ=255)

                                     tgctgTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCg                                                    >  2:5382936/1‑93 (MQ=255)

                                     tgctgTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCg                                                    >  1:1365360/1‑93 (MQ=255)

                                     tgctgTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCg                                                    >  2:1698690/1‑93 (MQ=255)

                                     tgctgTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGGTTAAGCg                                                    >  2:457280/1‑93 (MQ=255)

                                        tgtgCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGa                                                 >  1:197439/1‑93 (MQ=255)

                                        tgtgCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGa                                                 >  1:3124510/1‑93 (MQ=255)

                                         gtgCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGAt                                                <  2:5507073/93‑1 (MQ=255)

                                          tgCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATa                                               <  2:5867479/93‑1 (MQ=255)

                                           gCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAg                                              <  2:3135962/93‑1 (MQ=255)

                                             cTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCa                                            <  1:978379/93‑1 (MQ=255)

                                              tttCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCaa                                           >  2:1734367/1‑93 (MQ=255)

                                              tttCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCaa                                           >  1:5398739/1‑93 (MQ=255)

                                               ttCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAAc                                          <  2:1316313/93‑1 (MQ=255)

                                               ttCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAAc                                          <  1:6150226/93‑1 (MQ=255)

                                                tCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACa                                         <  2:4441066/93‑1 (MQ=255)

                                                tCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACa                                         >  1:4446581/1‑93 (MQ=255)

                                                tCAATGATTGTTTGTATCGACGACTTAACATACTGCGACAGGGCGTCCGTGCTGTGTAAAGCGCAATGAAATGGTTTAAGCGTGATAGCAACa                                         <  2:2154562/93‑1 (MQ=255)

                                                 cAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAg                                        <  2:5945502/93‑1 (MQ=255)

                                                  aaTGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAgg                                       >  1:3177760/1‑93 (MQ=255)

                                                  aaTGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAgg                                       <  1:5981191/93‑1 (MQ=255)

                                                   aTGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGc                                      <  1:2131227/93‑1 (MQ=255)

                                                    ttcTTGTTGCTATCGACGACTTAATATACTGCTACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCa                                     <  2:1977965/91‑1 (MQ=255)

                                                      cTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCAtt                                   <  2:2675430/93‑1 (MQ=255)

                                                      cTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCAtt                                   >  2:4753814/1‑93 (MQ=255)

                                                      cTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCAtt                                   >  2:3460203/1‑93 (MQ=255)

                                                          tttCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCgg                               <  1:3000332/93‑1 (MQ=255)

                                                            tCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGaa                             <  1:2216045/93‑1 (MQ=255)

                                                            tCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGGAAATCGCAACGAAATGGTTGAAGCGTGAGAGCAACAGGCATTGCGGaa                             >  1:6304806/1‑93 (MQ=255)

                                                             cTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGaaa                            <  2:565699/93‑1 (MQ=255)

                                                               aTCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAgt                          <  2:88612/93‑1 (MQ=255)

                                                                tCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAgtg                         >  1:4579882/1‑93 (MQ=255)

                                                                    cgacTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTcc                     <  2:3250645/93‑1 (MQ=255)

                                                                      acTTAATATACTGCGACAGGGCGTCCGTTCTGTATAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCAt                   <  1:3739891/93‑1 (MQ=255)

                                                                       cTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCAtt                  <  2:6290785/93‑1 (MQ=255)

                                                                       cTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCAtt                  <  1:2931707/93‑1 (MQ=255)

                                                                       cTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCAtt                  <  1:3666429/93‑1 (MQ=255)

                                                                        ttAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCAttt                 <  2:4050380/93‑1 (MQ=255)

                                                                        ttAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCAttt                 >  1:4965205/1‑93 (MQ=255)

                                                                         tAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCAtttt                >  1:172843/1‑93 (MQ=255)

                                                                          aaTATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTc               <  2:245005/93‑1 (MQ=255)

                                                                          aaTATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTc               <  2:43907/93‑1 (MQ=255)

                                                                           atatACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTcc              <  1:5788420/93‑1 (MQ=255)

                                                                            tataCTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCg             >  1:5815672/1‑93 (MQ=255)

                                                                            tataCTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCg             >  2:4816294/1‑93 (MQ=255)

                                                                             ataCTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCgg            <  2:2513370/93‑1 (MQ=255)

                                                                             ataCTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCgg            <  2:3389310/93‑1 (MQ=255)

                                                                             ataCTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCgg            >  1:4137257/1‑93 (MQ=255)

                                                                              taCTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGt           >  1:1048603/1‑93 (MQ=255)

                                                                              taCTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGt           <  2:4193876/93‑1 (MQ=255)

                                                                               aCTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTc          >  1:937093/1‑93 (MQ=255)

                                                                               aCTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTc          >  2:106084/1‑93 (MQ=255)

                                                                                 tGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTcaa        <  1:2441802/93‑1 (MQ=255)

                                                                                   cGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTcaaca      <  2:2028752/93‑1 (MQ=255)

                                                                                    gACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTcaacaa     >  1:5935243/1‑93 (MQ=255)

                                                                                     aCAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACaaa    >  1:4689995/1‑93 (MQ=255)

                                                                                     aCAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACaaa    >  1:2410919/1‑93 (MQ=255)

                                                                                      cAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACaaaa   <  2:5065009/93‑1 (MQ=255)

                                                                                      cAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACaaaa   <  2:4988430/93‑1 (MQ=255)

TGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGACGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAAAT  >  NC_000913/4178578‑4178757

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGACGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAAATAGTG  >  NC_000913/4178575‑4178761

CGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGG                                                                                               <  SRR4302533.2786756/94‑1 (MQ=60)

 GCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGC                                                                                              <  SRR4302533.4699536/94‑1 (MQ=60)

 GCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGC                                                                                              <  SRR4302533.5600822/94‑1 (MQ=60)

 GCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGC                                                                                              >  SRR4302533.80304/1‑94 (MQ=60)

   TGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGT                                                                                            <  SRR4302533.876371/94‑1 (MQ=60)

    GTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTC                                                                                           <  SRR4302533.1792153/94‑1 (MQ=60)

    GTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTC                                                                                           >  SRR4302533.1278902/1‑94 (MQ=60)

     TAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTGCTATCGACGACTTAATATACTGCGACAGGGCGTCC                                                                                          <  SRR4302533.3416401/94‑1 (MQ=60)

      AAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCG                                                                                         >  SRR4302533.3668370/1‑94 (MQ=60)

      AAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCG                                                                                         <  SRR4302533.5339232/94‑1 (MQ=60)

      AAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCG                                                                                         >  SRR4302533.5402271/1‑94 (MQ=60)

        GGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTT                                                                                       >  SRR4302533.3323598/1‑94 (MQ=60)

          CGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCT                                                                                     <  SRR4302533.606156/94‑1 (MQ=60)

           GCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTG                                                                                    <  SRR4302533.4262788/94‑1 (MQ=60)

            CCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGT                                                                                   <  SRR4302533.5197972/94‑1 (MQ=60)

            CCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGT                                                                                   >  SRR4302533.4059952/1‑94 (MQ=60)

            CCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGT                                                                                   <  SRR4302533.5625784/94‑1 (MQ=60)

            CCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGT                                                                                   >  SRR4302533.2779236/1‑94 (MQ=60)

             CAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTG                                                                                  <  SRR4302533.5912741/94‑1 (MQ=60)

              AGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGT                                                                                 >  SRR4302533.4321564/1‑94 (MQ=60)

                TAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAA                                                                               >  SRR4302533.146913/1‑94 (MQ=60)

                  GCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAAT                                                                             <  SRR4302533.105087/94‑1 (MQ=60)

                  GCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAAT                                                                             <  SRR4302533.5640895/94‑1 (MQ=60)

                   CGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATC                                                                            <  SRR4302533.1036745/94‑1 (MQ=60)

                   CGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATC                                                                            >  SRR4302533.2650962/1‑94 (MQ=60)

                   CGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATC                                                                            <  SRR4302533.2861311/94‑1 (MQ=60)

                   CGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATA                                                                            >  SRR4302533.3419904/1‑94 (MQ=60)

                    GTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCG                                                                           >  SRR4302533.4962776/1‑94 (MQ=60)

                    GTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCG                                                                           >  SRR4302533.3512883/1‑94 (MQ=60)

                    GTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCG                                                                           <  SRR4302533.3363693/94‑1 (MQ=60)

                     TTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGC                                                                          >  SRR4302533.2027526/1‑94 (MQ=60)

                      TTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCA                                                                         <  SRR4302533.5678857/94‑1 (MQ=60)

                       TCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGTCGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAA                                                                        <  SRR4302533.4110372/94‑1 (MQ=60)

                       TCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAA                                                                        >  SRR4302533.2614729/1‑94 (MQ=60)

                        CACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAAT                                                                       >  SRR4302533.1613565/1‑94 (MQ=60)

                        CACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAAT                                                                       <  SRR4302533.1731367/94‑1 (MQ=60)

                        CACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAAT                                                                       <  SRR4302533.6135718/94‑1 (MQ=60)

                        CACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAAT                                                                       >  SRR4302533.1275713/1‑94 (MQ=60)

                          CACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGA                                                                     >  SRR4302533.5829776/1‑94 (MQ=60)

                           ACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAA                                                                    <  SRR4302533.6061431/94‑1 (MQ=60)

                             TGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGCCAGGGCGTCCGTTCTGTGTAAATCGCAATGAAAT                                                                  <  SRR4302533.2724527/94‑1 (MQ=60)

                             TGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAAT                                                                  <  SRR4302533.2452617/94‑1 (MQ=60)

                             TGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAAT                                                                  <  SRR4302533.1122113/94‑1 (MQ=60)

                                TTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGT                                                               <  SRR4302533.5123860/94‑1 (MQ=60)

                                TTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTGCTGTGTAAATCGCAATGAAATGGT                                                               <  SRR4302533.2944707/94‑1 (MQ=60)

                                 TGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTT                                                              <  SRR4302533.5193681/94‑1 (MQ=60)

                                 TGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTT                                                              >  SRR4302533.5400271/1‑94 (MQ=60)

                                  GACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTT                                                             >  SRR4302533.1906106/1‑94 (MQ=60)

                                  GACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTT                                                             <  SRR4302533.5987628/94‑1 (MQ=60)

                                  GACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCCACGACTTCATATCATGCCACGGGGCGTCTGTCCTGTGTAAATCGCAATGAAAggcttc                                                             >  SRR4302533.5192196/1‑88 (MQ=42)

                                   ACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTA                                                            >  SRR4302533.6170658/1‑94 (MQ=60)

                                    CTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAA                                                           <  SRR4302533.4110160/94‑1 (MQ=60)

                                    CTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAA                                                           >  SRR4302533.471366/1‑94 (MQ=60)

                                     TACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAG                                                          >  SRR4302533.2196460/1‑94 (MQ=60)

                                      ACAGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGC                                                         <  SRR4302533.1889526/94‑1 (MQ=60)

                                       CTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCG                                                        >  SRR4302533.4382579/1‑94 (MQ=60)

                                       CTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCG                                                        >  SRR4302533.2505342/1‑94 (MQ=60)

                                       CTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCG                                                        >  SRR4302533.6067612/1‑94 (MQ=60)

                                       CTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCG                                                        >  SRR4302533.1373570/1‑94 (MQ=60)

                                        TGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGT                                                       <  SRR4302533.5213383/94‑1 (MQ=60)

                                          CTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGA                                                     >  SRR4302533.3143716/1‑94 (MQ=60)

                                          CTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGA                                                     >  SRR4302533.198683/1‑94 (MQ=60)

                                            GTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATG                                                   >  SRR4302533.5021439/1‑94 (MQ=60)

                                            GTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATA                                                   <  SRR4302533.1921460/94‑1 (MQ=60)

                                             TGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAG                                                  <  SRR4302533.3697077/94‑1 (MQ=60)

                                              GCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGC                                                 >  SRR4302533.5971414/1‑94 (MQ=60)

                                              GCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGC                                                 <  SRR4302533.2430774/94‑1 (MQ=60)

                                              GCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGA                                                 >  SRR4302533.3837491/1‑94 (MQ=60)

                                               CCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCA                                                <  SRR4302533.4871949/94‑1 (MQ=60)

                                               CCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCA                                                <  SRR4302533.4697415/94‑1 (MQ=60)

                                                CTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAA                                               <  SRR4302533.984116/94‑1 (MQ=60)

                                                CTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAA                                               >  SRR4302533.5930892/1‑94 (MQ=60)

                                                CTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAA                                               >  SRR4302533.5431182/1‑94 (MQ=60)

                                                 TTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTTATAGCAAA                                              >  SRR4302533.1680120/1‑94 (MQ=60)

                                                  TTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACA                                             <  SRR4302533.6187246/94‑1 (MQ=60)

                                                  TTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACA                                             >  SRR4302533.4473475/1‑94 (MQ=60)

                                                    CAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGG                                           >  SRR4302533.3197304/1‑94 (MQ=60)

                                                    CAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGG                                           >  SRR4302533.3107758/1‑94 (MQ=60)

                                                     AATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGC                                          <  SRR4302533.6017416/94‑1 (MQ=60)

                                                      ATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCA                                         >  SRR4302533.1304854/1‑94 (MQ=60)

                                                      ATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCA                                         <  SRR4302533.2144371/94‑1 (MQ=60)

                                                       TGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCAT                                        >  SRR4302533.1442089/1‑94 (MQ=60)

                                                       TGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCAT                                        <  SRR4302533.6069839/94‑1 (MQ=60)

                                                        TCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATT                                       <  SRR4302533.1910324/94‑1 (MQ=60)

                                                        GCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATT                                       <  SRR4302533.2982222/94‑1 (MQ=60)

                                                        GCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATT                                       <  SRR4302533.4305632/94‑1 (MQ=60)

                                                        GCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATT                                       <  SRR4302533.391797/94‑1 (MQ=60)

                                                         CTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTG                                      >  SRR4302533.1149538/1‑94 (MQ=60)

                                                            GTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGG                                   <  SRR4302533.2940135/94‑1 (MQ=60)

                                                             TTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGA                                  >  SRR4302533.5510167/1‑94 (MQ=60)

                                                             TTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGA                                  <  SRR4302533.3018681/94‑1 (MQ=60)

                                                             TTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGA                                  <  SRR4302533.1579418/94‑1 (MQ=60)

                                                              TTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAA                                 <  SRR4302533.44521/94‑1 (MQ=60)

                                                              CTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGGAAATCGCAACGAAATGGTTGAAGCGTGAGAGCAACAGGCATTGCGGAA                                 >  SRR4302533.6342522/1‑94 (MQ=60)

                                                               TCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAA                                <  SRR4302533.2229725/94‑1 (MQ=60)

                                                                CTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAG                               >  SRR4302533.3299555/1‑94 (MQ=60)

                                                                 TATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGC‑GAAAGTG                             >  SRR4302533.955969/1‑94 (MQ=60)

                                                                  ATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTG                             >  SRR4302533.4607636/1‑94 (MQ=60)

                                                                    CGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTT                           <  SRR4302533.5710864/94‑1 (MQ=60)

                                                                    CGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTT                           >  SRR4302533.3136483/1‑94 (MQ=60)

                                                                    CGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTT                           <  SRR4302533.2799111/94‑1 (MQ=60)

                                                                    CGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTT                           <  SRR4302533.945431/94‑1 (MQ=60)

                                                                      ACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCC                         >  SRR4302533.453360/1‑94 (MQ=60)

                                                                       CGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCA                        <  SRR4302533.1829698/94‑1 (MQ=60)

                                                                       CGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTCCCA                        <  SRR4302533.2046301/94‑1 (MQ=60)

                                                                        GACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCAT                       >  SRR4302533.2522907/1‑94 (MQ=60)

                                                                        GACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCAT                       <  SRR4302533.3181933/94‑1 (MQ=60)

                                                                         ACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATT                      <  SRR4302533.1779860/94‑1 (MQ=60)

                                                                         ACTTAATATACTGCGACAGGGCGTCCGTTCTGTATAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATT                      <  SRR4302533.3762829/94‑1 (MQ=60)

                                                                          CTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTT                     >  SRR4302533.4995302/1‑94 (MQ=60)

                                                                          CTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTT                     <  SRR4302533.2026085/94‑1 (MQ=60)

                                                                          CTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTT                     <  SRR4302533.2949637/94‑1 (MQ=60)

                                                                          CTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTT                     <  SRR4302533.3688966/94‑1 (MQ=60)

                                                                           TTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTT                    >  SRR4302533.173933/1‑94 (MQ=60)

                                                                             AATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCC                  <  SRR4302533.2078262/94‑1 (MQ=60)

                                                                              ATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCG                 <  SRR4302533.992554/94‑1 (MQ=60)

                                                                              ATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCG                 >  SRR4302533.5850796/1‑94 (MQ=60)

                                                                              ATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCG                 <  SRR4302533.5823393/94‑1 (MQ=60)

                                                                               TATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGG                >  SRR4302533.4162361/1‑94 (MQ=60)

                                                                               TATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGG                >  SRR4302533.6257992/1‑94 (MQ=60)

                                                                               TATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGG                <  SRR4302533.2371123/94‑1 (MQ=60)

                                                                               TATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGG                <  SRR4302533.1471752/94‑1 (MQ=60)

                                                                                ATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGT               >  SRR4302533.1054768/1‑94 (MQ=60)

                                                                                 TACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTC              >  SRR4302533.942599/1‑94 (MQ=60)

                                                                                  ACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCA             >  SRR4302533.3177359/1‑94 (MQ=60)

                                                                                  ACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCA             <  SRR4302533.6169730/94‑1 (MQ=60)

                                                                                    TGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAAC           <  SRR4302533.2456876/94‑1 (MQ=60)

                                                                                     GCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACA          <  SRR4302533.2213968/94‑1 (MQ=60)

                                                                                     GCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACA          <  SRR4302533.4287927/94‑1 (MQ=60)

                                                                                      CGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAA         >  SRR4302533.5971125/1‑94 (MQ=60)

                                                                                       GACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAA        >  SRR4302533.2425811/1‑94 (MQ=60)

                                                                                       GACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAA        >  SRR4302533.4718427/1‑94 (MQ=60)

                                                                                       GACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAA        >  SRR4302533.65024/1‑94 (MQ=60)

                                                                                       GACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAA        >  SRR4302533.4256627/1‑94 (MQ=60)

                                                                                         CAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAAAT      <  SRR4302533.5177993/94‑1 (MQ=60)

                                                                                          AGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAAATA     >  SRR4302533.6226784/1‑94 (MQ=60)

                                                                                          AGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAAATA     >  SRR4302533.4083578/1‑94 (MQ=60)

                                                                                           GGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAAATAG    >  SRR4302533.6136152/1‑94 (MQ=60)

                                                                                           GGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAAATAG    <  SRR4302533.1479708/94‑1 (MQ=60)

                                                                                            GGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAAATAGT   >  SRR4302533.2252074/1‑94 (MQ=60)

                                                                                            GGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAAATAGT   >  SRR4302533.5727762/1‑94 (MQ=60)

                                                                                            GGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAAATAGT   <  SRR4302533.3034436/94‑1 (MQ=60)

                                                                                             GCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAAATAGTG  <  SRR4302533.2000219/94‑1 (MQ=60)

                                                                                             GCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAAATAGTG  <  SRR4302533.3505285/94‑1 (MQ=60)

CGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGACGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAAATAGTG  >  NC_000913/4178575‑4178761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`