Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,185,057	C→T	D710D (GAC→GAT)	rpoC →	RNA polymerase beta prime subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,185,057	0	C	T	100.0%	963.9 / NA	257	D710D (GAC→GAT)	rpoC	RNA polymerase beta prime subunit
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (129/128); total (129/128)

Only 100 of 262 total aligned reads displayed.

CAAAGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCAGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCT  >  NC_000913/4184967‑4185146

caaAGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATgg                                                                                         <  2:4897464/93‑1 (MQ=255)

   aGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCa                                                                                      <  2:2933896/93‑1 (MQ=255)

    gTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAg                                                                                     <  1:5276959/93‑1 (MQ=255)

    gTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAg                                                                                     <  2:400358/93‑1 (MQ=255)

     ttATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAgg                                                                                    >  2:5919575/1‑93 (MQ=255)

      tATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGa                                                                                   <  1:4256594/93‑1 (MQ=255)

      tATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGa                                                                                   <  2:4042301/93‑1 (MQ=255)

      tATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGa                                                                                   >  2:558766/1‑93 (MQ=255)

        tCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAag                                                                                 <  1:1758007/93‑1 (MQ=255)

         cGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAaga                                                                                <  1:2224599/93‑1 (MQ=255)

          gATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAagag                                                                               >  2:2652631/1‑93 (MQ=255)

           atatCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAgaga                                                                              >  2:5744473/1‑93 (MQ=255)

            tatCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGaa                                                                             <  2:2290000/93‑1 (MQ=255)

             atCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAg                                                                            <  2:2765648/93‑1 (MQ=255)

                tGGGCTGCGGCGAACGCTCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAAGAAGAGAAGcgg                                                                         >  2:3893263/1‑91 (MQ=255)

                tGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGcgg                                                                         >  1:105143/1‑91 (MQ=255)

                tGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGcgg                                                                         >  2:869442/1‑91 (MQ=255)

                tGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGcgg                                                                         >  1:3669444/1‑91 (MQ=255)

                tGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGcgg                                                                         <  2:4123617/93‑3 (MQ=255)

                tGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGcgg                                                                         <  2:4603847/93‑3 (MQ=255)

                tGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGcgg                                                                         >  1:2090931/1‑91 (MQ=255)

                  ggCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGt                                                                       <  1:5982815/93‑1 (MQ=255)

                  ggCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGt                                                                       <  2:5006709/93‑1 (MQ=255)

                  ggCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGt                                                                       >  2:105232/1‑93 (MQ=255)

                    cTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGttt                                                                     <  2:5161776/93‑1 (MQ=255)

                     tGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTc                                                                    >  2:3237187/1‑93 (MQ=255)

                     tGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTc                                                                    <  1:5427383/93‑1 (MQ=255)

                     tGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGATTc                                                                    >  1:4546902/1‑93 (MQ=255)

                      gcggcgAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTcc                                                                   <  1:785992/93‑1 (MQ=255)

                      gcggcgAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTcc                                                                   <  1:3492699/93‑1 (MQ=255)

                        ggcgAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCtt                                                                 >  1:4875825/1‑93 (MQ=255)

                          cgAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCa                                                               <  1:671777/93‑1 (MQ=255)

                           gAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCaa                                                              <  1:4676433/93‑1 (MQ=255)

                           gAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCaa                                                              >  1:1724672/1‑93 (MQ=255)

                            aaCGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAAc                                                             >  1:3009795/1‑93 (MQ=255)

                             aCGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACa                                                            <  1:4621658/93‑1 (MQ=255)

                             aCGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACa                                                            <  2:2312021/93‑1 (MQ=255)

                             aCGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACa                                                            <  2:2006638/93‑1 (MQ=255)

                               gATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGGTTTCTTCAACAGc                                                          >  1:5234188/1‑93 (MQ=255)

                                 tCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCAt                                                        >  2:2513675/1‑93 (MQ=255)

                                  cGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATc                                                       <  1:1395879/93‑1 (MQ=255)

                                  cGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATc                                                       >  2:1286300/1‑93 (MQ=255)

                                   gtgtATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCt                                                      >  1:4797434/1‑93 (MQ=255)

                                   gtgtATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCt                                                      >  1:4691403/1‑93 (MQ=255)

                                    tgtATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTa                                                     <  1:3085645/93‑1 (MQ=255)

                                     gtATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTAc                                                    >  1:2306570/1‑93 (MQ=255)

                                      tATCCAAAGCGATGATGTATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACa                                                   <  2:2561244/93‑1 (MQ=255)

                                      tATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACa                                                   <  1:6270054/93‑1 (MQ=255)

                                         ccAAAGCGATGATGGATAACCTGCAAACTGAAGCCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACatga                                                <  1:3300887/93‑1 (MQ=255)

                                         ccAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACatga                                                <  1:5820933/93‑1 (MQ=255)

                                          cAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACatgat                                               <  1:3410336/93‑1 (MQ=255)

                                          cAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACatgat                                               <  1:3730168/93‑1 (MQ=255)

                                           aaaGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACatgatg                                              <  2:4634975/93‑1 (MQ=255)

                                             aGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGc                                            <  2:2719085/93‑1 (MQ=255)

                                             aGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGc                                            <  1:1549273/93‑1 (MQ=255)

                                                gatgatGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGa                                         >  1:5693997/1‑93 (MQ=255)

                                                gatgatGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGa                                         <  2:240403/93‑1 (MQ=255)

                                                gatgatGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGa                                         >  2:838689/1‑93 (MQ=255)

                                                gatgatGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGa                                         >  1:123461/1‑93 (MQ=255)

                                                 atgatgGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGAc                                        <  1:911396/93‑1 (MQ=255)

                                                 atgatgGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGAc                                        <  1:3931496/93‑1 (MQ=255)

                                                  tgatgGATAACCTGCAAACTGATACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCTTCTACATGATGGCCGACt                                       >  1:1296054/1‑93 (MQ=255)

                                                  tgatgGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACt                                       >  1:1278782/1‑93 (MQ=255)

                                                   gatgGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTc                                      <  1:1450089/93‑1 (MQ=255)

                                                    atgGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTcc                                     <  2:4204839/93‑1 (MQ=255)

                                                     tgGATAACCTGCAAACTGATACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCg                                    >  2:6160694/1‑93 (MQ=255)

                                                     tgGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCg                                    >  2:1958818/1‑93 (MQ=255)

                                                      ggATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCgg                                   >  2:1728504/1‑93 (MQ=255)

                                                      ggATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCgg                                   >  2:4516187/1‑93 (MQ=255)

                                                       gATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGt                                  >  2:921828/1‑93 (MQ=255)

                                                         tAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTgc                                <  2:5792772/93‑1 (MQ=255)

                                                          aaCCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTgcg                               >  1:3066317/1‑93 (MQ=255)

                                                          aaCCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTgcg                               <  1:614835/93‑1 (MQ=255)

                                                           aCCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTgcgc                              >  2:1363736/1‑93 (MQ=255)

                                                            ccTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGcgcg                             <  2:3688268/93‑1 (MQ=255)

                                                             cTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGt                            >  2:5111080/1‑93 (MQ=255)

                                                              tGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTg                           <  2:359629/93‑1 (MQ=255)

                                                                cAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGt                         >  2:2185174/1‑93 (MQ=255)

                                                                 aaaCTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGtt                        >  1:5460623/1‑93 (MQ=255)

                                                                  aaCTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTc                       <  1:5494006/93‑1 (MQ=255)

                                                                   aCTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCt                      >  2:521178/1‑93 (MQ=255)

                                                                     tGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGc                    <  2:1001407/93‑1 (MQ=255)

                                                                     tGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGc                    >  2:1123803/1‑93 (MQ=255)

                                                                     tGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGc                    <  1:3042506/93‑1 (MQ=255)

                                                                     tGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGc                    <  2:3333871/93‑1 (MQ=255)

                                                                      gAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCg                   >  2:1614768/1‑93 (MQ=255)

                                                                       aaaCCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCgg                  >  2:2429467/1‑93 (MQ=255)

                                                                          ccGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGcac               >  1:323988/1‑93 (MQ=255)

                                                                           cGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGcaca              <  1:5723659/93‑1 (MQ=255)

                                                                             tGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAgt            >  2:4271326/1‑92 (MQ=255)

                                                                             tGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGa            <  1:5390570/93‑1 (MQ=255)

                                                                             tGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGa            <  1:3543425/93‑1 (MQ=255)

                                                                              gATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGAt           <  1:2533821/93‑1 (MQ=255)

                                                                                ttAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTc         <  2:637365/93‑1 (MQ=255)

                                                                                 tAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCg        <  2:3882131/93‑1 (MQ=255)

                                                                                   aCCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTc      >  1:2584901/1‑93 (MQ=255)

                                                                                   aCCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTc      >  1:1921653/1‑93 (MQ=255)

                                                                                   aCCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTc      <  1:4841285/93‑1 (MQ=255)

                                                                                       tGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCt  >  2:3562280/1‑93 (MQ=255)

                                                                                       tGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCt  <  1:291393/93‑1 (MQ=255)

CAAAGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCAGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCT  >  NC_000913/4184967‑4185146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CAACAAAGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCAGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCT  >  NC_000913/4184964‑4185150

CAACAAAGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGAT                                                                                               <  SRR4302533.1131808/94‑1 (MQ=60)

CAACAAAGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGAT                                                                                               <  SRR4302533.2891380/94‑1 (MQ=60)

CAACAAAGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGAT                                                                                               <  SRR4302533.1198051/94‑1 (MQ=60)

CAACAAAGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGAT                                                                                               >  SRR4302533.6202010/1‑94 (MQ=60)

CAACAAAGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGAT                                                                                               >  SRR4302533.268338/1‑94 (MQ=60)

 AACAAAGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATG                                                                                              >  SRR4302533.2564686/1‑94 (MQ=60)

 AACAAAGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGAGATTAACCGTGATG                                                                                              >  SRR4302533.2765561/1‑94 (MQ=60)

     AAGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCA                                                                                          <  SRR4302533.4353651/94‑1 (MQ=60)

       GTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGG                                                                                        <  SRR4302533.5308594/94‑1 (MQ=60)

       GTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGG                                                                                        <  SRR4302533.4708149/94‑1 (MQ=60)

        TTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGA                                                                                       >  SRR4302533.3062737/1‑94 (MQ=60)

        TTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGA                                                                                       <  SRR4302533.5727281/94‑1 (MQ=60)

         TATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAA                                                                                      <  SRR4302533.4282257/94‑1 (MQ=60)

         TATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAA                                                                                      <  SRR4302533.671579/94‑1 (MQ=60)

           TCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGA                                                                                    <  SRR4302533.1768722/94‑1 (MQ=60)

            CGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAG                                                                                   <  SRR4302533.2238335/94‑1 (MQ=60)

            CGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAG                                                                                   <  SRR4302533.4670465/94‑1 (MQ=60)

            CGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAAACTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAG                                                                                   >  SRR4302533.1469966/1‑94 (MQ=60)

               TATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAG                                                                                <  SRR4302533.1713702/94‑1 (MQ=60)

                ATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGC                                                                               <  SRR4302533.4620839/94‑1 (MQ=60)

                 TCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCG                                                                              <  SRR4302533.2302038/94‑1 (MQ=60)

                 TCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCG                                                                              >  SRR4302533.3730008/1‑94 (MQ=60)

                 TCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCG                                                                              >  SRR4302533.3277166/1‑94 (MQ=60)

                 TCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCG                                                                              <  SRR4302533.4737344/94‑1 (MQ=60)

                  CTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGG                                                                             >  SRR4302533.2103809/1‑94 (MQ=60)

                  CTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGG                                                                             <  SRR4302533.5800487/94‑1 (MQ=60)

                  CTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGG                                                                             >  SRR4302533.105797/1‑94 (MQ=60)

                  CTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGG                                                                             >  SRR4302533.3692001/1‑94 (MQ=60)

                  CTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGG                                                                             <  SRR4302533.1252173/94‑1 (MQ=60)

                   TGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGG                                                                            <  SRR4302533.630398/94‑1 (MQ=60)

                   TGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGG                                                                            >  SRR4302533.3732482/1‑94 (MQ=60)

                    GGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGT                                                                           >  SRR4302533.3453128/1‑94 (MQ=60)

                    GGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGT                                                                           <  SRR4302533.4822168/94‑1 (MQ=60)

                     GGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTT                                                                          <  SRR4302533.6019048/94‑1 (MQ=60)

                      GCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTT                                                                         <  SRR4302533.5402140/94‑1 (MQ=60)

                       CTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGATTC                                                                        >  SRR4302533.4574438/1‑94 (MQ=60)

                        TGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCC                                                                       <  SRR4302533.5460068/94‑1 (MQ=60)

                        TGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCC                                                                       <  SRR4302533.6220000/94‑1 (MQ=60)

                         GCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCT                                                                      <  SRR4302533.790612/94‑1 (MQ=60)

                         GCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCT                                                                      <  SRR4302533.3514237/94‑1 (MQ=60)

                          CGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTT                                                                     >  SRR4302533.4905366/1‑94 (MQ=60)

                           GGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTC                                                                    >  SRR4302533.4847289/1‑94 (MQ=60)

                             CGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAA                                                                  >  SRR4302533.1735136/1‑94 (MQ=60)

                             CGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAA                                                                  <  SRR4302533.675743/94‑1 (MQ=60)

                             CGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAA                                                                  >  SRR4302533.5542340/1‑94 (MQ=60)

                              GAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAAC                                                                 >  SRR4302533.3672681/1‑94 (MQ=60)

                              GAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAAC                                                                 <  SRR4302533.4704775/94‑1 (MQ=60)

                              GAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAAC                                                                 >  SRR4302533.3028212/1‑94 (MQ=60)

                                ACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAG                                                               <  SRR4302533.4649669/94‑1 (MQ=60)

                                 CGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGC                                                              >  SRR4302533.190944/1‑94 (MQ=60)

                                 CGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGGTTTCTTCAACAGC                                                              >  SRR4302533.5265664/1‑94 (MQ=60)

                                 CGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGGCAGGAAGAGAAGCGGGTTTCCTTCAACAGC                                                              >  SRR4302533.6094869/1‑94 (MQ=60)

                                  GATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCA                                                             >  SRR4302533.5527101/1‑94 (MQ=60)

                                   ATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCAT                                                            >  SRR4302533.1417717/1‑94 (MQ=60)

                                   ATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCAT                                                            <  SRR4302533.4848093/94‑1 (MQ=60)

                                    TCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATC                                                           <  SRR4302533.5729486/94‑1 (MQ=60)

                                    TCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGCTTCCTTCAACAGCATC                                                           >  SRR4302533.857177/1‑94 (MQ=60)

                                     CGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCT                                                          >  SRR4302533.4826495/1‑94 (MQ=60)

                                     CGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCT                                                          <  SRR4302533.1404292/94‑1 (MQ=60)

                                     CGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCT                                                          >  SRR4302533.4719838/1‑94 (MQ=60)

                                      GTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTA                                                         >  SRR4302533.5132373/1‑94 (MQ=60)

                                       TGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTAC                                                        <  SRR4302533.3104616/94‑1 (MQ=60)

                                       TGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTAC                                                        >  SRR4302533.2320860/1‑94 (MQ=60)

                                        GTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGGTGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTAGA                                                       >  SRR4302533.5443589/1‑94 (MQ=60)

                                        GTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACA                                                       >  SRR4302533.5443588/1‑94 (MQ=60)

                                        GTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACA                                                       >  SRR4302533.5129161/1‑94 (MQ=60)

                                         TATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACAT                                                      <  SRR4302533.6307514/94‑1 (MQ=60)

                                          ATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATG                                                     >  SRR4302533.2003811/1‑94 (MQ=60)

                                          ATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATG                                                     <  SRR4302533.2152457/94‑1 (MQ=60)

                                            CCAAAGCGATGATGGATAACCTGCAAACTGAAGCCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGAT                                                   <  SRR4302533.3321268/94‑1 (MQ=60)

                                            CCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGAT                                                   <  SRR4302533.5856095/94‑1 (MQ=60)

                                            CCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGAT                                                   <  SRR4302533.5489615/94‑1 (MQ=60)

                                            CCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGAT                                                   >  SRR4302533.789785/1‑94 (MQ=60)

                                            CCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGAT                                                   <  SRR4302533.815708/94‑1 (MQ=60)

                                             CAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGCAGTGGGGTTACTTAAACAGCATCTACATTATG                                                  >  SRR4302533.3222396/1‑94 (MQ=60)

                                             CAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATG                                                  <  SRR4302533.3488498/94‑1 (MQ=60)

                                             CAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATG                                                  <  SRR4302533.3431400/94‑1 (MQ=60)

                                             CAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATG                                                  <  SRR4302533.141400/94‑1 (MQ=60)

                                             CAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATG                                                  <  SRR4302533.3753049/94‑1 (MQ=60)

                                              AAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGG                                                 <  SRR4302533.3532054/94‑1 (MQ=60)

                                               AAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGC                                                >  SRR4302533.2992408/1‑94 (MQ=60)

                                               AAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGC                                                <  SRR4302533.3053610/94‑1 (MQ=60)

                                                AGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCC                                               <  SRR4302533.1558611/94‑1 (MQ=60)

                                                  CGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGA                                             >  SRR4302533.5728380/1‑94 (MQ=60)

                                                  CGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGA                                             >  SRR4302533.124235/1‑94 (MQ=60)

                                                   GATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGAC                                            >  SRR4302533.1354104/1‑94 (MQ=60)

                                                   GATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGAC                                            >  SRR4302533.4084985/1‑94 (MQ=60)

                                                   GATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGAC                                            >  SRR4302533.361046/1‑94 (MQ=60)

                                                    ATGATGGATAACCTGCAAACTGATACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCTTCTACATGATGGCCGACT                                           >  SRR4302533.1303857/1‑94 (MQ=60)

                                                    ATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACT                                           >  SRR4302533.1286467/1‑94 (MQ=60)

                                                    ATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACT                                           <  SRR4302533.3955499/94‑1 (MQ=60)

                                                    ATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACT                                           <  SRR4302533.3791571/94‑1 (MQ=60)

                                                    ATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACT                                           <  SRR4302533.916743/94‑1 (MQ=60)

                                                     TGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTC                                          >  SRR4302533.5269699/1‑94 (MQ=60)

                                                      GATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCC                                         <  SRR4302533.1458839/94‑1 (MQ=60)

                                                      GATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCC                                         <  SRR4302533.1271095/94‑1 (MQ=60)

                                                       ATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCG                                        >  SRR4302533.4701560/1‑94 (MQ=60)

                                                        TGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGG                                       >  SRR4302533.1361606/1‑94 (MQ=60)

                                                         GGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGT                                      <  SRR4302533.4237505/94‑1 (MQ=60)

                                                          GATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTG                                     >  SRR4302533.933312/1‑94 (MQ=60)

                                                          GATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTG                                     >  SRR4302533.5389632/1‑94 (MQ=60)

                                                          GATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTG                                     >  SRR4302533.581415/1‑94 (MQ=60)

                                                          GATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTG                                     <  SRR4302533.3037958/94‑1 (MQ=60)

                                                            TAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCG                                   >  SRR4302533.3085152/1‑94 (MQ=60)

                                                            AAACCTGCAGACTGAAACCGTGATGAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCG                                   <  SRR4302533.2650112/94‑1 (MQ=60)

                                                             AACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGC                                  <  SRR4302533.618449/94‑1 (MQ=60)

                                                                CTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTG                               >  SRR4302533.2071180/1‑94 (MQ=60)

                                                                 TGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGG                              <  SRR4302533.1763102/94‑1 (MQ=60)

                                                                   CAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTT                            >  SRR4302533.5493521/1‑94 (MQ=60)

                                                                    AAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTC                           >  SRR4302533.2579942/1‑94 (MQ=60)

                                                                     AACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCT                          <  SRR4302533.1302317/94‑1 (MQ=60)

                                                                     AACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCT                          <  SRR4302533.5527150/94‑1 (MQ=60)

                                                                       CTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGC                        >  SRR4302533.4602034/1‑94 (MQ=60)

                                                                        TGAACCCGTGATTACCCGTGATGGTCAGGAAGAGAAGCGTGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGTGTGGTTCTGCG                       <  SRR4302533.1578230/94‑1 (MQ=60)

                                                                        TGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCG                       <  SRR4302533.3097864/94‑1 (MQ=60)

                                                                        TGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCG                       <  SRR4302533.3061128/94‑1 (MQ=60)

                                                                        TGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCG                       <  SRR4302533.1147928/94‑1 (MQ=60)

                                                                          AAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGC                     >  SRR4302533.775256/1‑94 (MQ=60)

                                                                            ACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCAC                   >  SRR4302533.325964/1‑94 (MQ=60)

                                                                            ACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCAC                   >  SRR4302533.6164992/1‑94 (MQ=60)

                                                                            ACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCAC                   <  SRR4302533.251522/94‑1 (MQ=60)

                                                                              CGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAG                 <  SRR4302533.5758215/94‑1 (MQ=60)

                                                                                TGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGAT               <  SRR4302533.5422962/94‑1 (MQ=60)

                                                                                TGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGAT               <  SRR4302533.3565262/94‑1 (MQ=60)

                                                                                TGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGAT               >  SRR4302533.2309400/1‑94 (MQ=60)

                                                                                 GATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATT              <  SRR4302533.2434426/94‑1 (MQ=60)

                                                                                 GATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATT              <  SRR4302533.2549420/94‑1 (MQ=60)

                                                                                  ATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTC             <  SRR4302533.164078/94‑1 (MQ=60)

                                                                                    TAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGT           >  SRR4302533.5510331/1‑94 (MQ=60)

                                                                                    TAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGT           <  SRR4302533.3196818/94‑1 (MQ=60)

                                                                                     AACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTC          >  SRR4302533.2600794/1‑94 (MQ=60)

                                                                                     AACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTC          <  SRR4302533.3084529/94‑1 (MQ=60)

                                                                                     AACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTC          >  SRR4302533.3274051/1‑94 (MQ=60)

                                                                                     AACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTC          >  SRR4302533.1933382/1‑94 (MQ=60)

                                                                                     AACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTC          >  SRR4302533.4891609/1‑94 (MQ=60)

                                                                                      ACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCA         >  SRR4302533.597300/1‑94 (MQ=60)

                                                                                      ACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCA         <  SRR4302533.4870628/94‑1 (MQ=60)

                                                                                       CCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAG        >  SRR4302533.2719663/1‑94 (MQ=60)

                                                                                         GTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCT      <  SRR4302533.3357049/94‑1 (MQ=60)

                                                                                         GTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCT      >  SRR4302533.1837593/1‑94 (MQ=60)

                                                                                          TGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTT     <  SRR4302533.293168/94‑1 (MQ=60)

                                                                                           GATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTG    >  SRR4302533.844869/1‑94 (MQ=60)

                                                                                           GATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTG    >  SRR4302533.1104655/1‑94 (MQ=60)

                                                                                           GATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTG    <  SRR4302533.2612009/94‑1 (MQ=60)

                                                                                            ATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGC   <  SRR4302533.5933079/94‑1 (MQ=60)

                                                                                            ATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGC   <  SRR4302533.2611113/94‑1 (MQ=60)

                                                                                             TGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGCCTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCT  <  SRR4302533.2101258/94‑1 (MQ=60)

                                                                                             TGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCT  <  SRR4302533.5153329/94‑1 (MQ=60)

CAACAAAGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCAGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCT  >  NC_000913/4184964‑4185150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`