Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,222,747 |
T→C |
C447C (TGT→TGC) |
metH → |
B12‑dependent homocysteine‑N5‑methyltetrahydrofolate transmethylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,222,747 | 0 | T | C | 100.0%
| 769.0
/ NA
| 234 | C447C (TGT→TGC) | metH | B12‑dependent homocysteine‑N5‑methyltetrahydrofolate transmethylase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (119/115); total (119/115) |
Only 100 of 245 total aligned reads displayed.
CAATCTGATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGTATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTGCGTCGCTACGG > NC_000913/4222657‑4222836
|
cAATCTGATTGCCGGTGAACCGGATATCTCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCAt < 2:6300175/93‑1 (MQ=255)
aTCTGATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATcc < 2:743307/93‑1 (MQ=255)
tCTGATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCa < 1:4137965/93‑1 (MQ=255)
tCTGATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCa < 1:634826/93‑1 (MQ=255)
cTGATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAg < 2:808678/93‑1 (MQ=255)
cTGATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAg < 1:4979506/93‑1 (MQ=255)
tGATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCAAgg > 1:5271958/1‑93 (MQ=255)
gATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAggg > 2:2853389/1‑93 (MQ=255)
gATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAggg > 2:5520197/1‑93 (MQ=255)
aTTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGc > 1:5173530/1‑93 (MQ=255)
aTTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGc > 1:465658/1‑93 (MQ=255)
gCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCaaa < 1:5953265/93‑1 (MQ=255)
ggTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGc < 2:2460643/93‑1 (MQ=255)
tGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCAt < 2:2050984/93‑1 (MQ=255)
tGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCAt < 1:4449867/93‑1 (MQ=255)
tGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCAt < 1:3078114/93‑1 (MQ=255)
aCCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGt < 2:4913103/93‑1 (MQ=255)
aCCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGt > 1:5777973/1‑93 (MQ=255)
aCCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGt > 1:480499/1‑93 (MQ=255)
cGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTa < 1:4836073/93‑1 (MQ=255)
cGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTa > 1:1602631/1‑93 (MQ=255)
cGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTa > 2:3104244/1‑93 (MQ=255)
ggATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTaa < 1:4737712/93‑1 (MQ=255)
ggATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTaa < 2:4860541/93‑1 (MQ=255)
gATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAAc < 2:1998235/93‑1 (MQ=255)
gATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAAc > 2:5882746/1‑93 (MQ=255)
tatCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAActc < 2:3978313/93‑1 (MQ=255)
atCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAActct > 2:5656446/1‑93 (MQ=255)
atCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAActct > 1:3357501/1‑93 (MQ=255)
atCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAActct < 1:1870079/93‑1 (MQ=255)
tcgctcgcGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTa > 2:4572511/1‑93 (MQ=255)
cgcgTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCg > 1:5354264/1‑93 (MQ=255)
gcgTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGa < 1:1506299/93‑1 (MQ=255)
gcgTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGa > 1:4885365/1‑93 (MQ=255)
gcgTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGa < 1:2499047/93‑1 (MQ=255)
cgTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGTGCAAAGGCATTGTTAACTCTATCTCGAt > 1:2773362/1‑93 (MQ=255)
cgTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGAt < 1:430179/93‑1 (MQ=255)
cgTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGAt < 2:5576476/93‑1 (MQ=255)
tGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGa < 1:2128603/93‑1 (MQ=255)
tGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGa > 1:2862087/1‑93 (MQ=255)
tGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGa < 1:1171924/93‑1 (MQ=255)
gCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGaa > 2:5427568/1‑93 (MQ=255)
gCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAACGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGaa < 2:6213910/93‑1 (MQ=255)
ccGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGaaa < 2:400293/93‑1 (MQ=255)
ccGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGaaa < 2:5054371/93‑1 (MQ=255)
gATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAaga > 1:2647155/1‑93 (MQ=255)
aTTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAagag < 2:3169639/93‑1 (MQ=255)
aTTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAagag > 2:5379061/1‑93 (MQ=255)
aTTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAagag < 2:3376913/93‑1 (MQ=255)
aTTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAagag < 2:383817/93‑1 (MQ=255)
ttATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGTGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAgg > 1:3990633/1‑93 (MQ=255)
ttATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAgg > 1:743555/1‑93 (MQ=255)
ttATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAgg > 1:1153033/1‑93 (MQ=255)
ttATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAgg < 1:2585775/93‑1 (MQ=255)
ttATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAgg > 1:4271367/1‑93 (MQ=255)
tATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAggg > 1:2299208/1‑93 (MQ=255)
tATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAggg < 1:3491884/93‑1 (MQ=255)
tATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAggg < 2:4699722/93‑1 (MQ=255)
tATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAggg < 2:3753108/93‑1 (MQ=255)
aTGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGc > 2:5722228/1‑93 (MQ=255)
aTGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGc > 2:2231728/1‑93 (MQ=255)
aTCGACTCCTCAAAATGGGACGTCATTGAAAAAGTTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTc < 2:2398171/93‑1 (MQ=255)
aTCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTc < 1:598519/93‑1 (MQ=255)
tCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCg > 2:6096110/1‑93 (MQ=255)
cGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGa < 2:4131467/93‑1 (MQ=255)
cGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGa < 2:4519363/93‑1 (MQ=255)
gACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGAt > 1:5891563/1‑93 (MQ=255)
gACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGAt > 1:3597780/1‑93 (MQ=255)
ctcctcAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGc > 2:4397242/1‑93 (MQ=255)
cctcAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCt > 1:2157141/1‑93 (MQ=255)
cctcAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCt > 1:6107520/1‑93 (MQ=255)
cctcAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCt < 2:4255559/93‑1 (MQ=255)
ctcAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCtt > 1:4380662/1‑93 (MQ=255)
cAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTa < 1:1678751/93‑1 (MQ=255)
cAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTa < 2:2356286/93‑1 (MQ=255)
aaaTGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATc < 2:1510207/93‑1 (MQ=255)
aaTGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATcc > 2:3407277/1‑93 (MQ=255)
aTGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCa < 1:6227100/93‑1 (MQ=255)
tGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCAt > 1:3964639/1‑93 (MQ=255)
tGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCAt > 2:5988462/1‑93 (MQ=255)
gACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCAc > 2:1301380/1‑93 (MQ=255)
gACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCAc > 1:3231975/1‑93 (MQ=255)
cGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCAcgc > 2:1757848/1‑93 (MQ=255)
gTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCAcgcg > 2:3904063/1‑93 (MQ=255)
cATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGaa < 1:1362662/93‑1 (MQ=255)
aTTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGaaa > 2:3674038/1‑93 (MQ=255)
aTTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGaaa > 2:5260804/1‑93 (MQ=255)
tGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAAtt < 1:2079511/93‑1 (MQ=255)
gAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAAttg > 1:3406059/1‑93 (MQ=255)
gAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAAttg > 1:3765878/1‑93 (MQ=255)
aaaGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAAttgttg > 2:2291808/1‑93 (MQ=255)
aaaGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAAttgttg > 2:3568297/1‑93 (MQ=255)
aaGCTCTGAAGTGCATCCAGCGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTGc < 2:2582511/93‑1 (MQ=255)
ggTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTGCGt < 1:2542914/93‑1 (MQ=255)
ggTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTGCGt < 1:2893252/93‑1 (MQ=255)
tCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTGCGTCg > 2:4430979/1‑93 (MQ=255)
cTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCGATCACGCGAAATTGTTGCGTCGc < 1:2167765/93‑1 (MQ=255)
gAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTGCGTCGCTa > 2:1400709/1‑93 (MQ=255)
aGTGCATCCAGGGCAAAGCCATTGTTAACTCTATCTCGATGAAAGAGGGCTTCGATGCCTTTATCCATCACGCGAAATTGTTGCGTCGCTACg < 2:1040232/93‑1 (MQ=255)
gtgcATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTGCGTCGCTACgg > 1:1000834/1‑93 (MQ=255)
|
CAATCTGATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGTATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTGCGTCGCTACGG > NC_000913/4222657‑4222836
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TCTCAATCTGATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGTATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTGCGTCGCTACGGTGCG > NC_000913/4222654‑4222840
|
TCTCAATCTGATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGC < SRR4302533.6117440/94‑1 (MQ=60)
TCTCAATCTGATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGC < SRR4302533.4529562/94‑1 (MQ=60)
TCAATCTGACTGCCGGTGAAGCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCAT < SRR4302533.2656063/94‑1 (MQ=60)
ATCTGATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCA < SRR4302533.3505025/94‑1 (MQ=60)
TCTGATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAG < SRR4302533.638558/94‑1 (MQ=60)
TCTGATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAG < SRR4302533.4163069/94‑1 (MQ=60)
TCTGATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAG < SRR4302533.6114447/94‑1 (MQ=60)
CTGATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGG < SRR4302533.2172298/94‑1 (MQ=60)
CTGATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGG > SRR4302533.1176620/1‑94 (MQ=60)
CTGATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGG < SRR4302533.5009699/94‑1 (MQ=60)
CTGATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGG < SRR4302533.2657407/94‑1 (MQ=60)
CTGATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCAAGG > SRR4302533.5303573/1‑94 (MQ=60)
TGATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGG < SRR4302533.4547554/94‑1 (MQ=60)
GATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGC < SRR4302533.5937582/94‑1 (MQ=60)
GATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGC > SRR4302533.468437/1‑94 (MQ=60)
GATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGC > SRR4302533.2993273/1‑94 (MQ=60)
GATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGC > SRR4302533.5204785/1‑94 (MQ=60)
TGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAA > SRR4302533.306517/1‑94 (MQ=60)
GCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAG < SRR4302533.5989277/94‑1 (MQ=60)
GCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAG > SRR4302533.485119/1‑94 (MQ=60)
GCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAG < SRR4302533.1614425/94‑1 (MQ=60)
GCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAG < SRR4302533.3390697/94‑1 (MQ=60)
CCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGGCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGG > SRR4302533.588354/1‑94 (MQ=60)
TGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATT < SRR4302533.4476776/94‑1 (MQ=60)
TGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATT < SRR4302533.3097003/94‑1 (MQ=60)
AACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGT > SRR4302533.4506936/1‑94 (MQ=60)
AACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGT > SRR4302533.5812874/1‑94 (MQ=60)
AACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGT > SRR4302533.3292340/1‑94 (MQ=60)
AACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGT > SRR4302533.483371/1‑94 (MQ=60)
ACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTT < SRR4302533.3995171/94‑1 (MQ=60)
CCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTA > SRR4302533.1612337/1‑94 (MQ=60)
CGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAA > SRR4302533.2430334/1‑94 (MQ=60)
CGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAA < SRR4302533.4865386/94‑1 (MQ=60)
GGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAAC < SRR4302533.4766439/94‑1 (MQ=60)
GATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACT > SRR4302533.2127354/1‑94 (MQ=60)
ATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTC < SRR4302533.6329812/94‑1 (MQ=60)
ATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTC > SRR4302533.1805251/1‑94 (MQ=60)
TATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCT > SRR4302533.3378249/1‑94 (MQ=60)
ATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTA < SRR4302533.1881482/94‑1 (MQ=60)
TCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTAT < SRR4302533.1596974/94‑1 (MQ=60)
CGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATC > SRR4302533.3513426/1‑94 (MQ=60)
GCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCT > SRR4302533.2651441/1‑94 (MQ=60)
CTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTC < SRR4302533.683856/94‑1 (MQ=60)
TCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCG < SRR4302533.6236590/94‑1 (MQ=60)
TCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCG > SRR4302533.5386401/1‑94 (MQ=60)
CGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGA > SRR4302533.4914961/1‑94 (MQ=60)
GCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGTGCAAAGGCATTGTTAACTCTATCTCGAT > SRR4302533.2790388/1‑94 (MQ=60)
GCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGAT < SRR4302533.2514463/94‑1 (MQ=60)
GCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGAT < SRR4302533.1515382/94‑1 (MQ=60)
CGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATG < SRR4302533.432745/94‑1 (MQ=60)
GTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGA > SRR4302533.2879693/1‑94 (MQ=60)
GTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGA > SRR4302533.4392868/1‑94 (MQ=60)
GTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGA > SRR4302533.2861974/1‑94 (MQ=60)
TGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAA < SRR4302533.1178960/94‑1 (MQ=60)
TGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAA < SRR4302533.2141729/94‑1 (MQ=60)
GCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAA < SRR4302533.5201886/94‑1 (MQ=60)
CCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAACGGCATTGTTAACTCTATCTCGATGAAAG > SRR4302533.5958793/1‑94 (MQ=60)
CCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAG > SRR4302533.5324146/1‑94 (MQ=60)
CGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGA > SRR4302533.2663419/1‑94 (MQ=60)
ATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGTGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGG > SRR4302533.4014937/1‑94 (MQ=60)
ATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGG > SRR4302533.747931/1‑94 (MQ=60)
ATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGG > SRR4302533.1159939/1‑94 (MQ=60)
ATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGG > SRR4302533.4297074/1‑94 (MQ=60)
TTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGG > SRR4302533.2313463/1‑94 (MQ=60)
TTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGG < SRR4302533.2601672/94‑1 (MQ=60)
tttttttcaatcctaaaaaaGGGACGTAATTGAAAAAGGTCTGAAGTGAATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGC < SRR4302533.4125171/74‑1 (MQ=60)
TATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGC < SRR4302533.5640889/94‑1 (MQ=60)
TATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGC < SRR4302533.3513418/94‑1 (MQ=60)
TATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGC > SRR4302533.2144640/1‑94 (MQ=60)
TATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGC < SRR4302533.2839243/94‑1 (MQ=60)
TATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGC < SRR4302533.1692360/94‑1 (MQ=60)
TATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATCGTTAACTCTATCTCGATGAAAGAGGGC > SRR4302533.489006/1‑94 (MQ=60)
ATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCG < SRR4302533.800422/94‑1 (MQ=60)
ATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCG < SRR4302533.2098744/94‑1 (MQ=60)
TGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGT < SRR4302533.1354657/94‑1 (MQ=60)
ATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCG < SRR4302533.602044/94‑1 (MQ=60)
CGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGAT > SRR4302533.3619917/1‑94 (MQ=60)
CGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGAT < SRR4302533.1233255/94‑1 (MQ=60)
CGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGAT > SRR4302533.5927151/1‑94 (MQ=60)
CTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCC > SRR4302533.4102649/1‑94 (MQ=60)
CTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCC > SRR4302533.4685396/1‑94 (MQ=60)
CTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCC > SRR4302533.5229522/1‑94 (MQ=60)
TCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCCGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCT > SRR4302533.4475859/1‑94 (MQ=60)
TCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCT > SRR4302533.2170421/1‑94 (MQ=60)
TCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCT > SRR4302533.6144395/1‑94 (MQ=60)
CCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTT > SRR4302533.4407110/1‑94 (MQ=60)
TCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTA < SRR4302533.4093936/94‑1 (MQ=60)
TCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTA < SRR4302533.2044182/94‑1 (MQ=60)
CAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTAT < SRR4302533.1688919/94‑1 (MQ=60)
CAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTAT > SRR4302533.6016191/1‑94 (MQ=60)
AAAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATC < SRR4302533.480930/94‑1 (MQ=60)
AAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCC < SRR4302533.5114612/94‑1 (MQ=60)
AAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCC < SRR4302533.1143797/94‑1 (MQ=60)
AAATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCC < SRR4302533.3558343/94‑1 (MQ=60)
AATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCA > SRR4302533.4977080/1‑94 (MQ=60)
ATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCAT < SRR4302533.3952498/94‑1 (MQ=60)
ATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCAT < SRR4302533.6264405/94‑1 (MQ=60)
ATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCAT > SRR4302533.3988792/1‑94 (MQ=60)
ATGGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCAT < SRR4302533.259925/94‑1 (MQ=60)
GGGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCA < SRR4302533.4270116/94‑1 (MQ=60)
GGACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCAC > SRR4302533.3251893/1‑94 (MQ=60)
GACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACG > SRR4302533.6282247/1‑94 (MQ=60)
ACGTCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGC > SRR4302533.2546107/1‑94 (MQ=60)
TCATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAA > SRR4302533.2197107/1‑94 (MQ=60)
CATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAA < SRR4302533.1370848/94‑1 (MQ=60)
ATTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAAT > SRR4302533.2769880/1‑94 (MQ=60)
TTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATT < SRR4302533.4299234/94‑1 (MQ=60)
TTGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATT > SRR4302533.6023868/1‑94 (MQ=60)
TGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTG < SRR4302533.2092306/94‑1 (MQ=60)
TGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTG > SRR4302533.3427096/1‑94 (MQ=60)
TGAAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTG > SRR4302533.3788964/1‑94 (MQ=60)
AAAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTT < SRR4302533.2536412/94‑1 (MQ=60)
AAAAGGTCTGAAGTGCATCCAGTGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTG < SRR4302533.2880621/94‑1 (MQ=60)
AAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTG < SRR4302533.477793/94‑1 (MQ=60)
AAAAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTG < SRR4302533.48827/94‑1 (MQ=60)
AAGGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTGCG > SRR4302533.1611399/1‑94 (MQ=60)
GGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTGCGTC < SRR4302533.2911034/94‑1 (MQ=60)
GGTCTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTGCGTC < SRR4302533.2558563/94‑1 (MQ=60)
CTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCGATCACGCGAAATTGTTGCGTCGCT < SRR4302533.2181098/94‑1 (MQ=60)
CTGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTGCGTCGCT > SRR4302533.1407308/1‑94 (MQ=60)
TGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTTGATGCCTTTATCCATCACGCGAAATTGTTGCGTCGCTA > SRR4302533.3735063/1‑94 (MQ=60)
TGAAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTGCGTCGCTA > SRR4302533.3796646/1‑94 (MQ=60)
AAGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTGCGTCGCTACG < SRR4302533.4378338/94‑1 (MQ=60)
AAGTGCATCCAGGGCAAAGGCANTGNTAACTCTATCTCGATGAAANAGGGCNTCNATGCttttntacatcnnncnaacttntngtntnnntncg > SRR4302533.1131085/1‑59 (MQ=60)
AGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTGCGTCGCTACGG > SRR4302533.1006677/1‑94 (MQ=60)
AGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTGCGTCGCTACGG > SRR4302533.2292296/1‑94 (MQ=60)
AGTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCCTCGATGCCTTTATCCATCACGCGAAATTGTTGCGTCGCTACGG < SRR4302533.3397695/94‑1 (MQ=60)
GTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTGCGTCGCTACGGT < SRR4302533.5542961/94‑1 (MQ=60)
GTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTGCGTCGCTACGGT < SRR4302533.3248250/94‑1 (MQ=60)
GTGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTGCGTCGCTACGGG > SRR4302533.4240594/1‑94 (MQ=60)
TGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTGCGTCGCTACGGTG < SRR4302533.5118374/94‑1 (MQ=60)
TGCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTGCGTCGCTACGGTG < SRR4302533.3726934/94‑1 (MQ=60)
GCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTGCGTCGCTACGGTGC > SRR4302533.5599881/1‑94 (MQ=60)
GCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTGCGTCGCTACGGTGC < SRR4302533.4543130/94‑1 (MQ=60)
GCATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTGCGTCGCTACGGTGC < SRR4302533.4051304/94‑1 (MQ=60)
CATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTGCGTCGCTACGGTGCG < SRR4302533.1192983/94‑1 (MQ=60)
|
TCTCAATCTGATTGCCGGTGAACCGGATATCGCTCGCGTGCCGATTATGATCGACTCCTCAAAATGGGACGTCATTGAAAAAGGTCTGAAGTGTATCCAGGGCAAAGGCATTGTTAACTCTATCTCGATGAAAGAGGGCGTCGATGCCTTTATCCATCACGCGAAATTGTTGCGTCGCTACGGTGCG > NC_000913/4222654‑4222840
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
