Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,259,162 A→G intergenic (+277/‑86) yjbM → / → yjbN hypothetical protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,259,1620AG100.0% 811.6 / NA 245intergenic (+277/‑86)yjbM/yjbNhypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (114/131);  total (114/131)

Only 100 of 261 total aligned reads displayed.

TTATTTCCATCACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATAGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATTTGAAAATGC  >  NC_000913/4259072‑4259251
                                                                                          |                                                                                         
ttattTCCATCACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTatggtatggt                                                                                         <  1:4966066/93‑1 (MQ=255)
 tattTCCATCACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTAtggtatggta                                                                                        >  1:1672860/1‑93 (MQ=255)
 tattTCCATCACTTCGTGAGAGCTTCATACCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTAtggtatggta                                                                                        >  2:4636188/1‑93 (MQ=255)
   tttCCATCACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTAcc                                                                                      >  1:5916189/1‑93 (MQ=255)
    ttCCATCACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTAccc                                                                                     <  2:4817953/93‑1 (MQ=255)
      ccATCACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTAccccc                                                                                   >  2:3796629/1‑92 (MQ=255)
       cATCACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTGCCCCGc                                                                                  <  1:5620137/93‑1 (MQ=255)
        aTCACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCt                                                                                 >  2:1539963/1‑93 (MQ=255)
        aTCACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCt                                                                                 >  2:1847509/1‑93 (MQ=255)
        aTCACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCt                                                                                 >  2:3902913/1‑93 (MQ=255)
          cACTTCGTGAGAGCTTCATGCCTTGAGGGTATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTAt                                                                               <  1:4352128/93‑1 (MQ=255)
          cACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTAt                                                                               <  2:6240092/93‑1 (MQ=255)
            cTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTg                                                                             <  2:4274156/93‑1 (MQ=255)
            cTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTg                                                                             <  1:2104232/93‑1 (MQ=255)
            cTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCAGTTGTTATGGTATGGTACCCCGCTATTg                                                                             >  1:6060036/1‑93 (MQ=255)
             ttCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGa                                                                            <  1:4444161/93‑1 (MQ=255)
              tCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAg                                                                           <  2:3021806/93‑1 (MQ=255)
               cGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGc                                                                          <  2:1422915/93‑1 (MQ=255)
                gTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGcc                                                                         <  1:4786534/93‑1 (MQ=255)
                 tGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGcct                                                                        >  1:3587856/1‑93 (MQ=255)
                    gagCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGcctcct                                                                     <  2:1770930/93‑1 (MQ=255)
                      gCTTCATGCCTTGAGATGATCTAATTTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGa                                                                   <  2:4884899/93‑1 (MQ=255)
                      gCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGa                                                                   <  2:5250810/93‑1 (MQ=255)
                       cTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGaa                                                                  <  2:1249152/93‑1 (MQ=255)
                         tCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATa                                                                <  2:1100900/93‑1 (MQ=255)
                         tCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATa                                                                >  1:791065/1‑93 (MQ=255)
                         tCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATa                                                                <  2:2665913/93‑1 (MQ=255)
                         tCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATa                                                                <  2:3973796/93‑1 (MQ=255)
                         tCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATa                                                                >  2:66700/1‑93 (MQ=255)
                         tCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATa                                                                <  1:1106542/93‑1 (MQ=255)
                         tCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATa                                                                <  1:3916647/93‑1 (MQ=255)
                         tCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATa                                                                <  1:2763059/93‑1 (MQ=255)
                          cATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAg                                                               <  1:5080767/93‑1 (MQ=255)
                          cATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAg                                                               >  1:211018/1‑93 (MQ=255)
                            tGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTg                                                             <  2:1138709/93‑1 (MQ=255)
                            tGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTg                                                             >  2:3657607/1‑93 (MQ=255)
                             gCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGa                                                            <  2:2543731/93‑1 (MQ=255)
                              ccTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGAt                                                           <  2:2123348/93‑1 (MQ=255)
                              ccTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGAt                                                           <  1:6041596/93‑1 (MQ=255)
                               cTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATg                                                          >  1:3562796/1‑93 (MQ=255)
                                    gagGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGaa                                                     <  1:4689718/93‑1 (MQ=255)
                                    gagGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGaa                                                     <  1:4935944/93‑1 (MQ=255)
                                    gagGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGaa                                                     <  2:334203/93‑1 (MQ=255)
                                     agGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAat                                                    <  2:2225291/93‑1 (MQ=255)
                                     agGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAat                                                    <  1:1223167/93‑1 (MQ=255)
                                      ggATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAata                                                   >  1:4163085/1‑93 (MQ=255)
                                        aTCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAataac                                                 >  1:4501067/1‑93 (MQ=255)
                                        aTCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAataac                                                 >  1:4743502/1‑93 (MQ=255)
                                        aTCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAataac                                                 >  1:3809416/1‑93 (MQ=255)
                                        aTCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAataac                                                 <  2:5971117/93‑1 (MQ=255)
                                         tctcAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAataaca                                                >  2:5201779/1‑93 (MQ=255)
                                         tctcAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAataaca                                                <  2:4753844/93‑1 (MQ=255)
                                           tcAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAataacata                                              <  1:3608058/93‑1 (MQ=255)
                                            cAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAataacataa                                             >  2:3201919/1‑93 (MQ=255)
                                            cAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAataacataa                                             <  2:2418032/93‑1 (MQ=255)
                                              aTTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAAcc                                           >  2:3593073/1‑93 (MQ=255)
                                               ttttCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAAccc                                          <  2:2777199/93‑1 (MQ=255)
                                                tttCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAAcccc                                         <  2:6006891/93‑1 (MQ=255)
                                                tttCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAAcccc                                         >  2:5788878/1‑93 (MQ=255)
                                                 ttCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCa                                        <  1:5291896/93‑1 (MQ=255)
                                                 ttCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCa                                        >  2:4440465/1‑93 (MQ=255)
                                                   cTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATg                                      >  2:6122030/1‑93 (MQ=255)
                                                   cTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATg                                      <  1:2432095/93‑1 (MQ=255)
                                                     tttGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGat                                    >  1:5450363/1‑93 (MQ=255)
                                                      ttGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGata                                   <  2:4068603/93‑1 (MQ=255)
                                                      ttGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGata                                   <  2:3558336/93‑1 (MQ=255)
                                                       tGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGatat                                  <  1:5221056/93‑1 (MQ=255)
                                                          aaTGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATc                               <  2:4734342/93‑1 (MQ=255)
                                                            tGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGa                             <  2:5470964/93‑1 (MQ=255)
                                                             gagaCAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGAt                            <  1:5762763/93‑1 (MQ=255)
                                                              agaCAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATa                           <  1:2955108/93‑1 (MQ=255)
                                                                aCAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATaaa                         <  1:3533795/93‑1 (MQ=255)
                                                                 cAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATaaaa                        >  2:149309/1‑93 (MQ=255)
                                                                   ggCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAaata                      >  1:1849313/1‑93 (MQ=255)
                                                                   ggCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAaata                      <  2:4700485/93‑1 (MQ=255)
                                                                    gcgcTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAaataa                     <  1:86904/93‑1 (MQ=255)
                                                                      gcTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAAtc                   >  2:3322298/1‑93 (MQ=255)
                                                                       cTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAAtct                  >  1:1430923/1‑93 (MQ=255)
                                                                       cTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAAtct                  >  2:5693576/1‑93 (MQ=255)
                                                                        ttCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAAtctc                 >  1:6155513/1‑93 (MQ=255)
                                                                        ttCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAAtctc                 >  1:645747/1‑93 (MQ=255)
                                                                        ttCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAAtctc                 >  1:550605/1‑93 (MQ=255)
                                                                         tCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATctct                <  1:746160/93‑1 (MQ=255)
                                                                         tCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACACCATGATATATCGATAAAATAAtctca                >  1:2003532/1‑92 (MQ=255)
                                                                          ccTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTa               <  2:551791/93‑1 (MQ=255)
                                                                          ccTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTa               >  2:5628725/1‑93 (MQ=255)
                                                                           cTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTAc              >  2:1882217/1‑93 (MQ=255)
                                                                           cTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTAc              <  1:10265/93‑1 (MQ=255)
                                                                           cTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTAc              <  1:5901597/93‑1 (MQ=255)
                                                                            tgttgtTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACa             >  2:316036/1‑93 (MQ=255)
                                                                             gttgttATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACAt            >  2:5096039/1‑93 (MQ=255)
                                                                                gttATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATTTg         >  1:2527213/1‑93 (MQ=255)
                                                                                  tatggtatggTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATTTGaa       >  1:3188154/1‑93 (MQ=255)
                                                                                  tatggtatggTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATTTGaa       >  1:2850524/1‑93 (MQ=255)
                                                                                   atggtatggtACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATTTGaaa      <  1:3376048/93‑1 (MQ=255)
                                                                                    tggtatggtaCCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATTTGaaaa     <  2:193621/93‑1 (MQ=255)
                                                                                    tggtatggtaCCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATTTGaaaa     <  2:753357/93‑1 (MQ=255)
                                                                                     ggTATGGTACCCCGCTATTGAGCCTACTGAATAGTGGTGCTGGATAACATAACCCCATGGTATATCGAGAAAATAATCTCTACATTTGTAAAt    >  2:1736869/1‑93 (MQ=255)
                                                                                      gTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATTTGAAAATg   <  1:2342942/93‑1 (MQ=255)
                                                                                       tatgGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATTTGAAAATGc  <  2:201898/93‑1 (MQ=255)
                                                                                          |                                                                                         
TTATTTCCATCACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATAGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATTTGAAAATGC  >  NC_000913/4259072‑4259251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGATTATTTCCATCACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATAGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATTTGAAAATGCACGG  >  NC_000913/4259069‑4259255
                                                                                             |                                                                                             
AGATTATTTCCATCACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATG                                                                                               >  SRR4302533.6050542/1‑94 (MQ=60)
AGATTATTTCCATCACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATG                                                                                               >  SRR4302533.5029500/1‑94 (MQ=60)
  ATTATTTCCATCACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGT                                                                                             >  SRR4302533.4729153/1‑94 (MQ=60)
   TTATTTCCATCACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTA                                                                                            <  SRR4302533.4996171/94‑1 (MQ=60)
   TTATTTCCATCACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTA                                                                                            >  SRR4302533.1682971/1‑94 (MQ=60)
     ATTTCCATCACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACC                                                                                          >  SRR4302533.5951945/1‑94 (MQ=60)
     ATTTCCATCACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACC                                                                                          >  SRR4302533.5951943/1‑94 (MQ=60)
     ATTTCCATCACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACC                                                                                          <  SRR4302533.6294761/94‑1 (MQ=60)
      TTTCCATCACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCC                                                                                         >  SRR4302533.5684507/1‑94 (MQ=60)
      TTTCCATCACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCC                                                                                         <  SRR4302533.5940638/94‑1 (MQ=60)
       TTCCATCACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCC                                                                                        <  SRR4302533.4583543/94‑1 (MQ=60)
          CATCACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTGCCCCGCT                                                                                     <  SRR4302533.5654104/94‑1 (MQ=60)
            TCACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTAT                                                                                   <  SRR4302533.336722/94‑1 (MQ=60)
             CACTTCGTGAGAGCTTCATGCCTTGAGGGTATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATT                                                                                  <  SRR4302533.4378389/94‑1 (MQ=60)
              ACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCAGTTGTTATGGTATGGTACCCCGCTATTG                                                                                 >  SRR4302533.6096723/1‑94 (MQ=60)
               CTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGA                                                                                >  SRR4302533.736312/1‑94 (MQ=60)
               CTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGA                                                                                <  SRR4302533.2117204/94‑1 (MQ=60)
                TTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAG                                                                               >  SRR4302533.533007/1‑94 (MQ=60)
                TTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAG                                                                               <  SRR4302533.4471042/94‑1 (MQ=60)
                   GTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCT                                                                            <  SRR4302533.4815522/94‑1 (MQ=60)
                   GTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCT                                                                            >  SRR4302533.3609951/1‑94 (MQ=60)
                   GTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCT                                                                            >  SRR4302533.3609950/1‑94 (MQ=60)
                    TGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTC                                                                           >  SRR4302533.4732998/1‑94 (MQ=60)
                     GAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCC                                                                          >  SRR4302533.5549061/1‑94 (MQ=60)
                       GAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTG                                                                        <  SRR4302533.786454/94‑1 (MQ=60)
                        AGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGA                                                                       >  SRR4302533.2521404/1‑94 (MQ=60)
                         GCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAA                                                                      <  SRR4302533.4422836/94‑1 (MQ=60)
                          CTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAAT                                                                     <  SRR4302533.238228/94‑1 (MQ=60)
                          CTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAAT                                                                     >  SRR4302533.5113499/1‑94 (MQ=60)
                           TTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATA                                                                    >  SRR4302533.795721/1‑94 (MQ=60)
                            TCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAG                                                                   >  SRR4302533.212348/1‑94 (MQ=60)
                            TCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAG                                                                   <  SRR4302533.2779996/94‑1 (MQ=60)
                            TCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAG                                                                   <  SRR4302533.1113104/94‑1 (MQ=60)
                            TCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAG                                                                   <  SRR4302533.3940570/94‑1 (MQ=60)
                             CATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGT                                                                  <  SRR4302533.5111473/94‑1 (MQ=60)
                                GCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGAT                                                               <  SRR4302533.401557/94‑1 (MQ=60)
                                 CCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATG                                                              <  SRR4302533.6078204/94‑1 (MQ=60)
                                 CCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATG                                                              >  SRR4302533.3584748/1‑94 (MQ=60)
                                  CTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGC                                                             >  SRR4302533.6094268/1‑94 (MQ=60)
                                   TTGAGAGGATCTCAATTTTCTTTTGCATTGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCT                                                            <  SRR4302533.3589651/94‑1 (MQ=60)
                                   TTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCT                                                            <  SRR4302533.5529649/94‑1 (MQ=60)
                                   TTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCT                                                            <  SRR4302533.3589650/94‑1 (MQ=60)
                                     GAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGA                                                          <  SRR4302533.2427786/94‑1 (MQ=60)
                                     GAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGA                                                          >  SRR4302533.190978/1‑94 (MQ=60)
                                     GAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGA                                                          <  SRR4302533.1060092/94‑1 (MQ=60)
                                      AGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGCATAGTGATGCTGAA                                                         >  SRR4302533.3628231/1‑94 (MQ=60)
                                       GAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAAT                                                        <  SRR4302533.4965831/94‑1 (MQ=60)
                                       GAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAAT                                                        <  SRR4302533.4718149/94‑1 (MQ=60)
                                        AGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATA                                                       >  SRR4302533.4188308/1‑94 (MQ=60)
                                        AGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATA                                                       >  SRR4302533.2966508/1‑94 (MQ=60)
                                        AGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATA                                                       <  SRR4302533.1230502/94‑1 (MQ=60)
                                          GATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAAC                                                     >  SRR4302533.4528331/1‑94 (MQ=60)
                                          GATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAAC                                                     >  SRR4302533.3832720/1‑94 (MQ=60)
                                          GATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAAC                                                     >  SRR4302533.4772258/1‑94 (MQ=60)
                                            TCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACAT                                                   <  SRR4302533.3418305/94‑1 (MQ=60)
                                             CTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATA                                                  >  SRR4302533.4944124/1‑94 (MQ=60)
                                             CTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATA                                                  >  SRR4302533.1705564/1‑94 (MQ=60)
                                             CTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATA                                                  <  SRR4302533.2126143/94‑1 (MQ=60)
                                              TCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAA                                                 <  SRR4302533.3049347/94‑1 (MQ=60)
                                              TCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAA                                                 <  SRR4302533.3630269/94‑1 (MQ=60)
                                               CAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTGCCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAAC                                                <  SRR4302533.4986092/94‑1 (MQ=60)
                                                AATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACC                                               <  SRR4302533.1655776/94‑1 (MQ=60)
                                                 ATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCC                                              >  SRR4302533.4067331/1‑94 (MQ=60)
                                                  TTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCC                                             >  SRR4302533.5916295/1‑94 (MQ=60)
                                                   TTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCA                                            <  SRR4302533.299006/94‑1 (MQ=60)
                                                   TTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCA                                            >  SRR4302533.4535603/1‑94 (MQ=60)
                                                    TTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCAT                                           <  SRR4302533.5323578/94‑1 (MQ=60)
                                                     TCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATG                                          <  SRR4302533.2020963/94‑1 (MQ=60)
                                                     TCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATG                                          <  SRR4302533.4794117/94‑1 (MQ=60)
                                                      CTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGA                                         <  SRR4302533.2447125/94‑1 (MQ=60)
                                                       TTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGAT                                        <  SRR4302533.5193939/94‑1 (MQ=60)
                                                       TTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGAT                                        >  SRR4302533.5483194/1‑94 (MQ=60)
                                                       TTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGAT                                        <  SRR4302533.857414/94‑1 (MQ=60)
                                                       TTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGAT                                        <  SRR4302533.3888538/94‑1 (MQ=60)
                                                        TTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATA                                       <  SRR4302533.5345654/94‑1 (MQ=60)
                                                          TGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATA                                     <  SRR4302533.5252475/94‑1 (MQ=60)
                                                            CAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATC                                   <  SRR4302533.393139/94‑1 (MQ=60)
                                                            CAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATC                                   >  SRR4302533.2880525/1‑94 (MQ=60)
                                                            CAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATC                                   >  SRR4302533.3488845/1‑94 (MQ=60)
                                                            CAATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATC                                   <  SRR4302533.3557771/94‑1 (MQ=60)
                                                             AATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCG                                  <  SRR4302533.2298914/94‑1 (MQ=60)
                                                             AATGAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCG                                  <  SRR4302533.6139738/94‑1 (MQ=60)
                                                                GAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATA                               <  SRR4302533.493639/94‑1 (MQ=60)
                                                                GAGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATA                               <  SRR4302533.5797542/94‑1 (MQ=60)
                                                                 AGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAA                              <  SRR4302533.2973178/94‑1 (MQ=60)
                                                                 AGACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAA                              <  SRR4302533.4451945/94‑1 (MQ=60)
                                                                   ACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAA                            <  SRR4302533.3555570/94‑1 (MQ=60)
                                                                   ACAGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAA                            >  SRR4302533.2582527/1‑94 (MQ=60)
                                                                     AGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATA                          >  SRR4302533.2744731/1‑94 (MQ=60)
                                                                     AGGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATA                          >  SRR4302533.1860594/1‑94 (MQ=60)
                                                                      GGCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAA                         <  SRR4302533.5980997/94‑1 (MQ=60)
                                                                       GCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAAT                        <  SRR4302533.87463/94‑1 (MQ=60)
                                                                       GCGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAAT                        <  SRR4302533.1814429/94‑1 (MQ=60)
                                                                        CGCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATC                       <  SRR4302533.2789680/94‑1 (MQ=60)
                                                                         GCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCT                      >  SRR4302533.1439572/1‑94 (MQ=60)
                                                                         GCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCT                      >  SRR4302533.1560651/1‑94 (MQ=60)
                                                                         GCTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCT                      >  SRR4302533.6020447/1‑94 (MQ=60)
                                                                          CTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTC                     >  SRR4302533.649550/1‑94 (MQ=60)
                                                                          CTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTC                     >  SRR4302533.6192546/1‑94 (MQ=60)
                                                                          CTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTC                     >  SRR4302533.5091534/1‑94 (MQ=60)
                                                                          CTTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTC                     >  SRR4302533.553870/1‑94 (MQ=60)
                                                                           TTCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACACCATGATATATCGATAAAATAATCTCA                    >  SRR4302533.2015872/1‑94 (MQ=60)
                                                                            TCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTA                   >  SRR4302533.1192873/1‑94 (MQ=60)
                                                                            TCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTA                   <  SRR4302533.750551/94‑1 (MQ=60)
                                                                            TCCTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTAAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTA                   >  SRR4302533.5725130/1‑94 (MQ=60)
                                                                              CTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACA                 <  SRR4302533.381274/94‑1 (MQ=60)
                                                                              CTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACA                 >  SRR4302533.5035611/1‑94 (MQ=60)
                                                                              CTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACA                 <  SRR4302533.5937237/94‑1 (MQ=60)
                                                                              CTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACA                 <  SRR4302533.6171895/94‑1 (MQ=60)
                                                                              CTGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACA                 <  SRR4302533.10349/94‑1 (MQ=60)
                                                                               TGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACAT                >  SRR4302533.4234251/1‑94 (MQ=60)
                                                                               TGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACAT                >  SRR4302533.1425646/1‑94 (MQ=60)
                                                                               TGTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACAT                >  SRR4302533.755123/1‑94 (MQ=60)
                                                                                GTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATT               >  SRR4302533.4472220/1‑94 (MQ=60)
                                                                                GTTGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATT               >  SRR4302533.693247/1‑94 (MQ=60)
                                                                                  TGTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATTTG             >  SRR4302533.2542772/1‑94 (MQ=60)
                                                                                   GTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATTTGA            <  SRR4302533.5285027/94‑1 (MQ=60)
                                                                                   GTTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATTTGA            <  SRR4302533.5627052/94‑1 (MQ=60)
                                                                                    TTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATTTGAA           >  SRR4302533.1121529/1‑94 (MQ=60)
                                                                                    TTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATTTGAA           >  SRR4302533.2868062/1‑94 (MQ=60)
                                                                                    TTATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATTTGAA           >  SRR4302533.3207767/1‑94 (MQ=60)
                                                                                     TATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATTTGAAA          <  SRR4302533.2120374/94‑1 (MQ=60)
                                                                                      ATGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATTTGAAAA         <  SRR4302533.3396895/94‑1 (MQ=60)
                                                                                       TGGTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATTTGAAAAT        <  SRR4302533.2105804/94‑1 (MQ=60)
                                                                                         GTATGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATTTGAAAATGC      <  SRR4302533.2357447/94‑1 (MQ=60)
                                                                                            TGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATTTGAAAATGCACG   <  SRR4302533.4379176/94‑1 (MQ=60)
                                                                                            TGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATTTGAAAATGCACG   >  SRR4302533.5503612/1‑94 (MQ=60)
                                                                                            TGGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATTTGAAAATGCACG   <  SRR4302533.1032261/94‑1 (MQ=60)
                                                                                             GGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATTTGAAAATGCACGG  <  SRR4302533.615329/94‑1 (MQ=60)
                                                                                             GGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATTTGAAAATGCACGG  >  SRR4302533.614659/1‑94 (MQ=60)
                                                                                             |                                                                                             
AGATTATTTCCATCACTTCGTGAGAGCTTCATGCCTTGAGAGGATCTCAATTTTCTTTTGCAATGAGACAGGCGCTTCCTGTTGTTATGGTATAGTACCCCGCTATTGAGCCTCCTGAATAGTGATGCTGAATAACATAACCCCATGATATATCGATAAAATAATCTCTACATTTGAAAATGCACGG  >  NC_000913/4259069‑4259255

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑