Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,369,637 |
T→C |
R345R (CGT→CGC) |
mopA → |
GroEL |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,369,637 | 0 | T | C | 99.6%
| 796.7
/ NA
| 249 | R345R (CGT→CGC) | mopA | GroEL |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (121/127); minor base A (0/1); total (121/128) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 258 total aligned reads displayed.
AGACCTGGGTCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGTGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGGCAGGCGG > NC_000913/4369547‑4369726
|
aGACCTGGGTCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCgcgt < 1:2289843/93‑1 (MQ=255)
gACCTGGGTCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGtt > 1:5200998/1‑93 (MQ=255)
ccTGGGTCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGc > 1:826674/1‑93 (MQ=255)
cTGGGTCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCt > 2:4961629/1‑93 (MQ=255)
cTGGGTCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCt > 2:1333400/1‑93 (MQ=255)
tGGGTCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTc > 1:5691366/1‑93 (MQ=255)
tGGGTCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTc > 1:550546/1‑93 (MQ=255)
gggTCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCa > 1:4573153/1‑93 (MQ=255)
ggTCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAg < 1:1579066/93‑1 (MQ=255)
gTCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGa < 1:5332455/93‑1 (MQ=255)
cAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATc < 1:5662910/93‑1 (MQ=255)
aGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATcc < 1:4127871/93‑1 (MQ=255)
aGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATcc > 1:2383385/1‑93 (MQ=255)
ggCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCg > 2:5732137/1‑93 (MQ=255)
ggCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCg < 2:4473440/93‑1 (MQ=255)
gCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGt > 1:4338844/1‑93 (MQ=255)
cTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTc < 2:2020495/93‑1 (MQ=255)
cTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTc < 2:4747808/93‑1 (MQ=255)
tAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTca > 1:3271583/1‑93 (MQ=255)
aaaCGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTcag > 1:6187259/1‑93 (MQ=255)
aaaCGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTcag > 1:222728/1‑93 (MQ=255)
aaaCGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTcag > 2:276679/1‑93 (MQ=255)
aaaCGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTcag < 1:6192611/93‑1 (MQ=255)
aaCGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTcagc < 1:2567610/93‑1 (MQ=255)
gtgtTGTGATCAACAAAGGCACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGa < 2:2172698/93‑1 (MQ=255)
gtgtTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGa > 2:3034816/1‑93 (MQ=255)
tgtgATCAACAAAGACACCACCACTATCATCGATGGCGTGGTTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTga < 1:2189930/93‑1 (MQ=255)
tgtgATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTga < 2:2377473/93‑1 (MQ=255)
tgtgATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTga > 2:5664633/1‑93 (MQ=255)
tgtgATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTga < 2:2232026/93‑1 (MQ=255)
gtgATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTgaa < 1:6048804/93‑1 (MQ=255)
gtgATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTgaa > 1:1257794/1‑93 (MQ=255)
gATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTgaaga < 1:5875693/93‑1 (MQ=255)
gATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTgaaga > 1:2536972/1‑93 (MQ=255)
tCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGCTTGaagaag > 2:4603897/1‑93 (MQ=255)
tCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGaagaag < 2:2244479/93‑1 (MQ=255)
aacaaAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCa < 2:3593169/93‑1 (MQ=255)
aaaGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACt > 2:148395/1‑93 (MQ=255)
aaGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACtt > 2:3290112/1‑93 (MQ=255)
aaGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACtt < 2:346758/93‑1 (MQ=255)
aGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTc > 2:4666199/1‑93 (MQ=255)
aGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTc < 1:3444183/93‑1 (MQ=255)
accccaccacTATCATCGATGGCGTGGGTTAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTg < 1:2052492/90‑1 (MQ=255)
accaccacTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGAc < 2:844653/93‑1 (MQ=255)
accaccacTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGAc < 1:3940264/93‑1 (MQ=255)
caccacTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTa < 1:202464/93‑1 (MQ=255)
caccacTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTa > 1:4799706/1‑93 (MQ=255)
caccacTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTa < 1:468979/93‑1 (MQ=255)
accacTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTAc > 2:3864930/1‑93 (MQ=255)
accacTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTAc > 1:5051996/1‑93 (MQ=255)
acTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGAc > 1:5550787/1‑93 (MQ=255)
acTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGAc > 2:5068533/1‑93 (MQ=255)
tATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCg > 1:1445938/1‑93 (MQ=255)
tcatcGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGCCCGTg > 1:3362322/1‑93 (MQ=255)
tcatcGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTg > 2:1962569/1‑93 (MQ=255)
atcGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGaa > 1:2865251/1‑93 (MQ=255)
tcGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGaaa > 2:5274121/1‑93 (MQ=255)
tcGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGaaa < 2:6115298/93‑1 (MQ=255)
tcGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGaaa > 2:1649549/1‑93 (MQ=255)
cGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGaaaa < 1:1080501/93‑1 (MQ=255)
cGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGaaaa < 1:3000734/93‑1 (MQ=255)
gtGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAAc < 2:4251703/92‑1 (MQ=255)
tGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACt < 2:6067980/93‑1 (MQ=255)
tGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACt < 2:1734153/93‑1 (MQ=255)
ggCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTg < 2:6252361/93‑1 (MQ=255)
gCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGc < 1:3109897/93‑1 (MQ=255)
gTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAg < 2:4842147/93‑1 (MQ=255)
tGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAgg > 1:37885/1‑93 (MQ=255)
gggTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGa < 2:2909792/93‑1 (MQ=255)
gggTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGa > 1:1203241/1‑93 (MQ=255)
ggTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGaa < 1:2821307/93‑1 (MQ=255)
ggTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGaa < 2:4400551/93‑1 (MQ=255)
ggTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGaa < 2:4539426/93‑1 (MQ=255)
ggTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGaa < 1:4888956/93‑1 (MQ=255)
ggTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGaa > 1:578942/1‑93 (MQ=255)
aagaagCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAAcgcg < 1:964040/93‑1 (MQ=255)
agaagCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGt > 1:741205/1‑93 (MQ=255)
agaagCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGt < 2:2871327/93‑1 (MQ=255)
gaagCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTa < 1:1888248/93‑1 (MQ=255)
gaagCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTa > 1:1110037/1‑93 (MQ=255)
gCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCg < 2:5398945/93‑1 (MQ=255)
gCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCg > 1:3619485/1‑93 (MQ=255)
gCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCg > 1:2773587/1‑93 (MQ=255)
gCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCg > 2:3472056/1‑93 (MQ=255)
cTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGa > 1:3045752/1‑93 (MQ=255)
cTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGa < 1:374608/93‑1 (MQ=255)
cAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAAc < 1:2417833/93‑1 (MQ=255)
aaTCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACt > 2:4190947/1‑93 (MQ=255)
aaTCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACt > 2:4134796/1‑93 (MQ=255)
aTCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTg < 2:5898400/93‑1 (MQ=255)
aTCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTg < 2:3733958/93‑1 (MQ=255)
aTCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTg > 2:1931332/1‑93 (MQ=255)
cAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGGCa < 2:4388613/93‑1 (MQ=255)
cAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGGCa < 1:2269322/93‑1 (MQ=255)
aGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGGCAg < 2:710347/93‑1 (MQ=255)
ggCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGGCAggc < 2:3267381/93‑1 (MQ=255)
ggCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGGCAggc < 2:1366571/93‑1 (MQ=255)
gCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGCCTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGGCAggcg < 2:4089329/93‑1 (MQ=255)
gCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGGCAggcg > 2:2592412/1‑93 (MQ=255)
ccGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGGCAggcgg < 1:3595696/93‑1 (MQ=255)
|
AGACCTGGGTCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGTGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGGCAGGCGG > NC_000913/4369547‑4369726
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGAAGACCTGGGTCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGTGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGGCAGGCGGCGTT > NC_000913/4369544‑4369730
|
GGAAGACCTGGGTCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGC > SRR4302533.3478077/1‑94 (MQ=60)
AGACCTGGGTCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTT < SRR4302533.2304023/94‑1 (MQ=60)
AGACCTGGGTCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTT > SRR4302533.5232348/1‑94 (MQ=60)
AGACCTGGGTCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTT < SRR4302533.1971883/94‑1 (MQ=60)
GACCTGGGTCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTG > SRR4302533.2576162/1‑94 (MQ=60)
ACCTGGGTCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGC > SRR4302533.2419638/1‑94 (MQ=60)
ACCTGGGTCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGC > SRR4302533.831521/1‑94 (MQ=60)
CTGGGTCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTC > SRR4302533.553811/1‑94 (MQ=60)
CTGGGTCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTC > SRR4302533.5725738/1‑94 (MQ=60)
TGGGTCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCA > SRR4302533.4600867/1‑94 (MQ=60)
GGGTCAGGCTAGACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAG < SRR4302533.2827143/94‑1 (MQ=60)
GGTCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGA < SRR4302533.1588576/94‑1 (MQ=60)
GTCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGAT < SRR4302533.1186733/94‑1 (MQ=60)
GTCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGAT < SRR4302533.5364412/94‑1 (MQ=60)
TCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATC < SRR4302533.1405912/94‑1 (MQ=60)
TCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATC > SRR4302533.5317102/1‑94 (MQ=60)
CAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCC > SRR4302533.2398118/1‑94 (MQ=60)
CAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCC > SRR4302533.3245356/1‑94 (MQ=60)
CAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCC < SRR4302533.5697123/94‑1 (MQ=60)
AGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCG < SRR4302533.4964596/94‑1 (MQ=60)
AGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCG < SRR4302533.4152926/94‑1 (MQ=60)
AGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCG > SRR4302533.2642434/1‑94 (MQ=60)
GGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGT < SRR4302533.2016028/94‑1 (MQ=60)
GGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGT < SRR4302533.5619300/94‑1 (MQ=60)
GGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGT > SRR4302533.4364992/1‑94 (MQ=60)
CTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCA < SRR4302533.5885060/94‑1 (MQ=60)
CTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCA > SRR4302533.3291773/1‑94 (MQ=60)
CTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCA > SRR4302533.3621027/1‑94 (MQ=60)
CTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCA > SRR4302533.313251/1‑94 (MQ=60)
CTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCAGCGTTGCTCAGATCCGTCA > SRR4302533.2319755/1‑94 (MQ=60)
TAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAG > SRR4302533.6224397/1‑94 (MQ=60)
TAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAG > SRR4302533.224119/1‑94 (MQ=60)
AAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGC < SRR4302533.6229772/94‑1 (MQ=60)
AACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCA < SRR4302533.2583412/94‑1 (MQ=60)
TGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATT > SRR4302533.852278/1‑94 (MQ=60)
TGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATT < SRR4302533.1311779/94‑1 (MQ=60)
TGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGCCCGCGTTGCTCAGATCCGTCAGCAGATT > SRR4302533.4708211/1‑94 (MQ=60)
GTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTG < SRR4302533.429498/94‑1 (MQ=60)
TTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGGTCAGATCCGTCAGCAGATTGA < SRR4302533.1253991/94‑1 (MQ=60)
TGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGTTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAA < SRR4302533.2203422/94‑1 (MQ=60)
TGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAA < SRR4302533.778135/94‑1 (MQ=60)
TGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAA > SRR4302533.1265315/1‑94 (MQ=60)
TGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAA > SRR4302533.1149760/1‑94 (MQ=60)
GTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAG < SRR4302533.6085450/94‑1 (MQ=60)
TGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGA > SRR4302533.2552590/1‑94 (MQ=60)
TGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGA > SRR4302533.3546811/1‑94 (MQ=60)
GATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAA > SRR4302533.821243/1‑94 (MQ=60)
GATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAA < SRR4302533.5911212/94‑1 (MQ=60)
GATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAA > SRR4302533.5716068/1‑94 (MQ=60)
ATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAG < SRR4302533.3377845/94‑1 (MQ=60)
ATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAG > SRR4302533.6225134/1‑94 (MQ=60)
TCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGC < SRR4302533.6165431/94‑1 (MQ=60)
AACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAA > SRR4302533.3026125/1‑94 (MQ=60)
ACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAAC > SRR4302533.3509515/1‑94 (MQ=60)
ACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAAC < SRR4302533.2558829/94‑1 (MQ=60)
CAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACT > SRR4302533.5607701/1‑94 (MQ=60)
AGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCT < SRR4302533.4547438/94‑1 (MQ=60)
AGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCT < SRR4302533.3465455/94‑1 (MQ=60)
ACCCCACCACTATCATCGATGGCGTGGGTTAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGA < SRR4302533.2065156/94‑1 (MQ=60)
ACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGA > SRR4302533.2264932/1‑94 (MQ=60)
ACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGA < SRR4302533.731266/94‑1 (MQ=60)
CACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGAC > SRR4302533.288268/1‑94 (MQ=60)
ACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACT < SRR4302533.3964308/94‑1 (MQ=60)
CCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTA > SRR4302533.4828780/1‑94 (MQ=60)
CACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTAC < SRR4302533.2213032/94‑1 (MQ=60)
CACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTAC < SRR4302533.471778/94‑1 (MQ=60)
CACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTAC < SRR4302533.203748/94‑1 (MQ=60)
CACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTAC > SRR4302533.499819/1‑94 (MQ=60)
CACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTAC > SRR4302533.5082543/1‑94 (MQ=60)
ACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACG < SRR4302533.3654641/94‑1 (MQ=60)
ACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACG > SRR4302533.4837903/1‑94 (MQ=60)
CACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGAC > SRR4302533.3439977/1‑94 (MQ=60)
CACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGAC > SRR4302533.5584308/1‑94 (MQ=60)
CACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGAC < SRR4302533.5762383/94‑1 (MQ=60)
CACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGAC < SRR4302533.5890931/94‑1 (MQ=60)
ACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACC < SRR4302533.3440190/94‑1 (MQ=60)
CTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCG > SRR4302533.1454662/1‑94 (MQ=60)
TATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGT > SRR4302533.4718377/1‑94 (MQ=60)
ATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGCCCGTG > SRR4302533.3383095/1‑94 (MQ=60)
ATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTG < SRR4302533.6268508/94‑1 (MQ=60)
ATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTG < SRR4302533.5578611/94‑1 (MQ=60)
TCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACaccaacgtgga > SRR4302533.1147899/1‑83 (MQ=60)
CATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAA > SRR4302533.2882880/1‑94 (MQ=60)
ATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAA > SRR4302533.2370031/1‑94 (MQ=60)
CGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAA < SRR4302533.1086873/94‑1 (MQ=60)
CGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAA < SRR4302533.5929755/94‑1 (MQ=60)
CGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAA < SRR4302533.3019085/94‑1 (MQ=60)
ATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACT > SRR4302533.174805/1‑94 (MQ=60)
GCGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCA < SRR4302533.3129011/94‑1 (MQ=60)
CGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAG > SRR4302533.5139129/1‑94 (MQ=60)
CGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAG > SRR4302533.3783361/1‑94 (MQ=60)
CGTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAG < SRR4302533.3650801/94‑1 (MQ=60)
GTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGG > SRR4302533.38135/1‑94 (MQ=60)
GTGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGG < SRR4302533.225860/94‑1 (MQ=60)
TGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGA > SRR4302533.3077300/1‑94 (MQ=60)
TGGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGA > SRR4302533.1210473/1‑94 (MQ=60)
GGGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAA > SRR4302533.582354/1‑94 (MQ=60)
GGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCTTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAAC < SRR4302533.1556984/94‑1 (MQ=60)
GGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAAC < SRR4302533.4918578/94‑1 (MQ=60)
GGTGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAAC < SRR4302533.2838670/94‑1 (MQ=60)
TGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGC < SRR4302533.2802321/94‑1 (MQ=60)
TGAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGC > SRR4302533.230198/1‑94 (MQ=60)
GAAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCG > SRR4302533.3024747/1‑94 (MQ=60)
AAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGT > SRR4302533.745568/1‑94 (MQ=60)
AAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGT > SRR4302533.3945715/1‑94 (MQ=60)
AAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGT < SRR4302533.969702/94‑1 (MQ=60)
AAGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGT < SRR4302533.2877620/94‑1 (MQ=60)
AGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTA > SRR4302533.5513249/1‑94 (MQ=60)
AGAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTA > SRR4302533.1116622/1‑94 (MQ=60)
GAAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAG < SRR4302533.1899784/94‑1 (MQ=60)
GAAGCGGCAATCCAGTGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAG < SRR4302533.430991/94‑1 (MQ=60)
AAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGC < SRR4302533.5379426/94‑1 (MQ=60)
AAGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGC < SRR4302533.2534907/94‑1 (MQ=60)
AGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCG < SRR4302533.1834034/94‑1 (MQ=60)
AGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCG > SRR4302533.3641753/1‑94 (MQ=60)
AGCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCG > SRR4302533.2790615/1‑94 (MQ=60)
GCTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGA > SRR4302533.3064397/1‑94 (MQ=60)
CTGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAA < SRR4302533.376871/94‑1 (MQ=60)
TGCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAA > SRR4302533.2040424/1‑94 (MQ=60)
GCAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAAC < SRR4302533.5764606/94‑1 (MQ=60)
CAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACT < SRR4302533.2432766/94‑1 (MQ=60)
CAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACT > SRR4302533.3963793/1‑94 (MQ=60)
CAATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACT < SRR4302533.5151291/94‑1 (MQ=60)
ATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGG > SRR4302533.2924478/1‑94 (MQ=60)
ATCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGG < SRR4302533.4449327/94‑1 (MQ=60)
TCCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGGC < SRR4302533.1103626/94‑1 (MQ=60)
CCAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGGCA < SRR4302533.2113755/94‑1 (MQ=60)
CAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGGCAG < SRR4302533.3999138/94‑1 (MQ=60)
CAGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGGCAG < SRR4302533.2283361/94‑1 (MQ=60)
AGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGGCAGG > SRR4302533.6140310/1‑94 (MQ=60)
AGGGCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGGGAAAAACTGCAGGAACGCGTAGCGAAACTGGCAGG > SRR4302533.239962/1‑94 (MQ=60)
GGTCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGGCAGGC < SRR4302533.2144686/94‑1 (MQ=60)
GCCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGGCAGGCGG < SRR4302533.4733073/94‑1 (MQ=60)
CCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGGCAGGCGGG > SRR4302533.5633936/1‑94 (MQ=60)
CCGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGGCAGGCGGC < SRR4302533.3617818/94‑1 (MQ=60)
CGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGGCAGGCGGCG > SRR4302533.4325984/1‑94 (MQ=60)
CGCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGGCAGGCGGCG < SRR4302533.4133689/94‑1 (MQ=60)
GCGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGGCAGGCGGCGT < SRR4302533.669721/94‑1 (MQ=60)
GGTTGCTCAGATCCGTCAGCAGATTGAACAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGGCAGGCGGCGTT < SRR4302533.4831506/94‑1 (MQ=60)
CGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGGCAGGCGGCGTT < SRR4302533.3054360/94‑1 (MQ=60)
|
GGAAGACCTGGGTCAGGCTAAACGTGTTGTGATCAACAAAGACACCACCACTATCATCGATGGCGTGGGTGAAGAAGCTGCAATCCAGGGCCGTGTTGCTCAGATCCGTCAGCAGATTGAAGAAGCAACTTCTGACTACGACCGTGAAAAACTGCAGGAACGCGTAGCGAAACTGGCAGGCGGCGTT > NC_000913/4369544‑4369730
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
