Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,472,602	A→G	Y56C (TAC→TGC)	b4252 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,472,602	0	A	G	100.0%	800.9 / NA	250	Y56C (TAC→TGC)	b4252	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (136/114); total (136/114)

Only 100 of 260 total aligned reads displayed.

ACACGTTACGGCAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTACGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAAC  >  NC_000913/4472513‑4472691

acacGTTACGGCAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGa                                                                                        >  2:847360/1‑93 (MQ=255)

 cacGTTACGGCAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGaa                                                                                       >  1:996922/1‑93 (MQ=255)

    gTTACGGCAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCt                                                                                    <  2:1114863/93‑1 (MQ=255)

    gTTACGGCAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCt                                                                                    <  2:3029005/93‑1 (MQ=255)

     ttACGGCAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTc                                                                                   <  1:3759689/93‑1 (MQ=255)

     ttACGGCAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTc                                                                                   >  2:2183013/1‑93 (MQ=255)

        cGGCAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGcc                                                                                <  1:3992015/93‑1 (MQ=255)

         ggCAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCg                                                                               >  2:543719/1‑93 (MQ=255)

         ggCAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCg                                                                               <  2:2011693/93‑1 (MQ=255)

         ggCAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCg                                                                               >  2:6177830/1‑93 (MQ=255)

          gCAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCgg                                                                              >  2:533726/1‑92 (MQ=255)

          gCAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGt                                                                              <  2:2113842/93‑1 (MQ=255)

          gCAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGt                                                                              >  2:3150628/1‑93 (MQ=255)

           cAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTg                                                                             >  2:4699156/1‑93 (MQ=255)

            aGAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGc                                                                            >  1:1960639/1‑93 (MQ=255)

             gAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCg                                                                           >  1:2978320/1‑93 (MQ=255)

             gAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCg                                                                           >  2:4106984/1‑93 (MQ=255)

               aaCGCCAAAGGCCAAGCACGATATCGAAGGCAATCGCCTGTTTTATCTTATCCCGGAAGATATGACCGAGCCGGGCGAAGCTCGCCGTGCggg                                                                         >  2:375954/1‑92 (MQ=255)

                aCGCCAAAGGGCAAGCACGATGTCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAGTCTCGTCGTGCGGAg                                                                        >  1:3208885/1‑93 (MQ=255)

                 cGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGt                                                                       <  2:631231/93‑1 (MQ=255)

                  gCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTa                                                                      <  2:2921633/93‑1 (MQ=255)

                    cAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTAcc                                                                    >  1:6078378/1‑93 (MQ=255)

                     aaaGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCa                                                                   <  2:3073331/93‑1 (MQ=255)

                     aaaGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCa                                                                   >  1:4803635/1‑93 (MQ=255)

                     aaaGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCa                                                                   <  2:5715636/93‑1 (MQ=255)

                     aaaGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCa                                                                   >  1:1585534/1‑93 (MQ=255)

                     aaaGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCa                                                                   <  1:1741343/93‑1 (MQ=255)

                     aaaGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCa                                                                   >  2:1234513/1‑93 (MQ=255)

                     aaaGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCa                                                                   <  2:3732751/93‑1 (MQ=255)

                       aGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATg                                                                 >  1:4971301/1‑93 (MQ=255)

                         ggCAAGCACGATATCGAAGGCAATCGACTTTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGcc                                                               <  1:1693331/93‑1 (MQ=255)

                         ggCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGcc                                                               <  2:219106/93‑1 (MQ=255)

                               cACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTAt                                                         >  1:2602481/1‑93 (MQ=255)

                                 cGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCt                                                       <  2:5919381/93‑1 (MQ=255)

                                 cGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCt                                                       <  1:5756755/93‑1 (MQ=255)

                                 agATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCt                                                       <  1:5179972/92‑1 (MQ=255)

                                  gATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCtt                                                      >  2:4815998/1‑93 (MQ=255)

                                  gATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCtt                                                      <  1:5765019/93‑1 (MQ=255)

                                    tatCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGa                                                    >  2:3933878/1‑93 (MQ=255)

                                     atCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGAc                                                   >  1:4220880/1‑93 (MQ=255)

                                      tCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACa                                                  <  2:1200343/93‑1 (MQ=255)

                                       cGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACAt                                                 <  1:6024092/93‑1 (MQ=255)

                                       cGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATACCCGCTATCTTGACAt                                                 <  1:3976102/93‑1 (MQ=255)

                                          aGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCa                                              >  1:3037610/1‑93 (MQ=255)

                                          aGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCa                                              <  2:3138976/93‑1 (MQ=255)

                                             cAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGAt                                           <  2:606914/93‑1 (MQ=255)

                                             cAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGAt                                           <  2:5606227/93‑1 (MQ=255)

                                              aaTCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGAtt                                          <  1:3674008/93‑1 (MQ=255)

                                              aaTCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGAtt                                          >  2:3656237/1‑93 (MQ=255)

                                              aaTCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGAtt                                          >  1:4632882/1‑93 (MQ=255)

                                               aTCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATtg                                         >  1:2585880/1‑93 (MQ=255)

                                               aTCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATtg                                         >  1:3246440/1‑93 (MQ=255)

                                                  gACTGTTTTGTCTTATCTCGGAAGATATGAAGGAGCCGGGCGAAGCTCGCCGTGCGGAGCACCATGCACGCTATCTTGACATTCAGAATgtgt                                      >  2:3519187/1‑93 (MQ=255)

                                                  gACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTgtgt                                      >  1:5113454/1‑93 (MQ=255)

                                                  gACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGATCGCCGTGCGGAGTACCATGCCAGCTATCTTGACATTCAGATTgcgt                                      >  1:4328316/1‑93 (MQ=255)

                                                   aCTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGtt                                     >  2:2411958/1‑93 (MQ=255)

                                                    cTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTa                                    >  1:6161229/1‑93 (MQ=255)

                                                    cTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTa                                    >  1:531442/1‑93 (MQ=255)

                                                     tGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTaa                                   >  1:3823967/1‑93 (MQ=255)

                                                     tGTTTTATCTTATCTCGGAAGATATAACCGAGCCGGGCGAAGCTCGCCGTGCGGAGTACTATGCCCGCTATCTTGACATTCAGATTGTGTTaa                                   >  1:1214715/1‑93 (MQ=255)

                                                      gTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTaaa                                  >  1:1831439/1‑93 (MQ=255)

                                                       ttttATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTaaaa                                 >  1:4868961/1‑93 (MQ=255)

                                                       ttttATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTaaaa                                 <  1:557382/93‑1 (MQ=255)

                                                       ttttATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTaaaa                                 <  1:2226554/93‑1 (MQ=255)

                                                       ttttATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTaaaa                                 <  2:1642384/93‑1 (MQ=255)

                                                       ttttATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTaaaa                                 <  2:4261659/93‑1 (MQ=255)

                                                        tttATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAg                                <  1:3563489/93‑1 (MQ=255)

                                                         ttatcttatcTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAgg                               <  2:5536212/93‑1 (MQ=255)

                                                          tatcttctctCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGt                              <  1:173059/93‑1 (MQ=255)

                                                          tatcttatctCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGt                              <  2:960542/93‑1 (MQ=255)

                                                            tcttatctCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCa                            <  1:3401716/93‑1 (MQ=255)

                                                            tcttatctCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGCTCa                            >  2:1335559/1‑93 (MQ=255)

                                                              ttatctCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAgg                          >  1:2242280/1‑93 (MQ=255)

                                                                atctCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGaa                        >  2:578209/1‑93 (MQ=255)

                                                                atctCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGaa                        <  1:680588/93‑1 (MQ=255)

                                                                 tctcGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAg                       <  1:2082789/93‑1 (MQ=255)

                                                                  ctcGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAgg                      <  2:2347012/93‑1 (MQ=255)

                                                                   tcGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGc                     >  2:4721814/1‑93 (MQ=255)

                                                                   tcGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGc                     >  2:4616014/1‑93 (MQ=255)

                                                                    cGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCa                    <  2:1425075/93‑1 (MQ=255)

                                                                     ggAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCAt                   >  2:1519239/1‑93 (MQ=255)

                                                                     ggAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCAt                   >  2:1886569/1‑93 (MQ=255)

                                                                     ggAAGATATGACCGAGCCGTGAGAAGCTCGCCGTGCGGAGGACCATGCCCGCTATCGTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCAt                   >  2:2821969/1‑93 (MQ=255)

                                                                      gAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATg                  >  2:3611271/1‑93 (MQ=255)

                                                                      gAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATg                  >  1:165996/1‑93 (MQ=255)

                                                                          atatGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCt              <  1:3148407/93‑1 (MQ=255)

                                                                           tatGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCATGAAGGCATGACCtt             >  2:2742414/1‑93 (MQ=255)

                                                                           tatGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCtt             >  1:85580/1‑93 (MQ=255)

                                                                            atGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTc            <  2:4524232/93‑1 (MQ=255)

                                                                            atGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTc            >  1:1092443/1‑93 (MQ=255)

                                                                             tGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCa           >  1:1034064/1‑93 (MQ=255)

                                                                               aCCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAATAGGTCAGGAAGGCATGACCTTCAGc         >  2:5369600/1‑93 (MQ=255)

                                                                               aCCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGc         >  1:2738501/1‑93 (MQ=255)

                                                                               aCCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTAAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGc         >  1:2628766/1‑93 (MQ=255)

                                                                                ccGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCa        >  1:6178094/1‑93 (MQ=255)

                                                                                ccGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCa        >  1:5333256/1‑93 (MQ=255)

                                                                                ccGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCGATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCa        >  1:2540498/1‑93 (MQ=255)

                                                                                 cGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCAc       >  1:1327966/1‑93 (MQ=255)

                                                                                    gCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCa    >  2:2498174/1‑93 (MQ=255)

                                                                                     ccGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCaa   >  1:400519/1‑93 (MQ=255)

ACACGTTACGGCAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTACGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAAC  >  NC_000913/4472513‑4472691

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AAGCACACGTTACGGCAGAAACGCCAAAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTACGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGC  >  NC_000913/4472509‑4472695

AAGCACACGTTACGGCAGAAACGCCAAAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGCAGATATGACCGAGCCGTG                                                                                               >  SRR4302533.108830/1‑94 (MQ=60)

AAGCACACGTTACGGCAGAAACGCCAAAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTG                                                                                               >  SRR4302533.5071674/1‑94 (MQ=60)

    ACACGTTACGGCAGAAACGCGAAAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAA                                                                                           <  SRR4302533.5312436/94‑1 (MQ=60)

    ACACGTTACGGCAGAAACGCCAAAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAA                                                                                           >  SRR4302533.1002743/1‑94 (MQ=60)

       CGTTACGACAGAAACGCCAAAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCT                                                                                        <  SRR4302533.4111108/94‑1 (MQ=60)

         TTACGGCAGAAACGCCAAAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCG                                                                                      <  SRR4302533.5794965/94‑1 (MQ=60)

         TTACGGCAGAAACGCCAAAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCG                                                                                      <  SRR4302533.3782736/94‑1 (MQ=60)

           ACGGCAGAAACGCCAAAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCC                                                                                    >  SRR4302533.1107175/1‑94 (MQ=60)

            CGGCAGAAACGCCAAAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCG                                                                                   <  SRR4302533.4016325/94‑1 (MQ=60)

             GGCAGAAACGCCAAAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGT                                                                                  <  SRR4302533.3793717/94‑1 (MQ=60)

               CAGAAACGCCAAAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGC                                                                                >  SRR4302533.1972606/1‑94 (MQ=60)

                AGAAACGCCAAAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCG                                                                               >  SRR4302533.2996543/1‑94 (MQ=60)

                  AAACGCCAAAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGA                                                                             >  SRR4302533.3187766/1‑94 (MQ=60)

                  AAACGCCAAAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGA                                                                             <  SRR4302533.5798693/94‑1 (MQ=60)

                   AACGCCAAAGGG‑CAAGCACGATGTCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAGTCTCGTCGTGCGGAG                                                                            >  SRR4302533.3228650/1‑94 (MQ=60)

                   AACGCCAAAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAG                                                                            <  SRR4302533.5000098/94‑1 (MQ=60)

                      GCCAAAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTAC                                                                         >  SRR4302533.2630033/1‑94 (MQ=60)

                       CCAAAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAGGATATGACCGAGCCGGGCGAAGCTCGCCGTGCGGAGAACC                                                                        >  SRR4302533.1093298/1‑94 (MQ=60)

                       CCAAAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACC                                                                        >  SRR4302533.6115139/1‑94 (MQ=60)

                        CAAAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCA                                                                       >  SRR4302533.1595086/1‑94 (MQ=60)

                        CAAAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCA                                                                       <  SRR4302533.5102409/94‑1 (MQ=60)

                        CAAAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCA                                                                       >  SRR4302533.4832727/1‑94 (MQ=60)

                         AAAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCAT                                                                      <  SRR4302533.1751902/94‑1 (MQ=60)

                         AAAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCAT                                                                      <  SRR4302533.3038807/94‑1 (MQ=60)

                         AAAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCAT                                                                      <  SRR4302533.4015452/94‑1 (MQ=60)

                          AAGGGACAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCAT                                                                      <  SRR4302533.1602607/94‑1 (MQ=60)

                          AAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATG                                                                     <  SRR4302533.6301293/94‑1 (MQ=60)

                          AAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATG                                                                     >  SRR4302533.5001441/1‑94 (MQ=60)

                             GG‑CAAGCACGATATCGAAGGCAATCGACTTTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCC                                                                  <  SRR4302533.1703586/94‑1 (MQ=60)

                              G‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGGACCATGCCCG                                                                 >  SRR4302533.4351266/1‑94 (MQ=60)

                                 AAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCT                                                               <  SRR4302533.3882141/94‑1 (MQ=60)

                                  AGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTA                                                              >  SRR4302533.390086/1‑94 (MQ=60)

                                   GCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTAT                                                             <  SRR4302533.5954643/94‑1 (MQ=60)

                                   GCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTAT                                                             <  SRR4302533.5185818/94‑1 (MQ=60)

                                   GCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTAT                                                             >  SRR4302533.2618473/1‑94 (MQ=60)

                                     ACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCT                                                           <  SRR4302533.4020357/94‑1 (MQ=60)

                                     ACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCT                                                           <  SRR4302533.5397136/94‑1 (MQ=60)

                                      CGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTT                                                          <  SRR4302533.5791494/94‑1 (MQ=60)

                                      AGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTT                                                          <  SRR4302533.5211254/94‑1 (MQ=60)

                                       GATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTG                                                         <  SRR4302533.5799809/94‑1 (MQ=60)

                                        ATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGC                                                        >  SRR4302533.3730084/1‑94 (MQ=60)

                                        ATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGA                                                        <  SRR4302533.3764727/94‑1 (MQ=60)

                                         TATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGAC                                                       >  SRR4302533.4246405/1‑94 (MQ=60)

                                          ATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACA                                                      <  SRR4302533.729042/94‑1 (MQ=60)

                                          ATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACA                                                      >  SRR4302533.5408921/1‑94 (MQ=60)

                                           TCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACAT                                                     >  SRR4302533.4712819/1‑94 (MQ=60)

                                            CGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATT                                                    <  SRR4302533.6060597/94‑1 (MQ=60)

                                            CGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATT                                                    >  SRR4302533.166030/1‑94 (MQ=60)

                                            CGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATACCCGCTATCTTGACATT                                                    <  SRR4302533.4000309/94‑1 (MQ=60)

                                             GAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTC                                                   >  SRR4302533.5696663/1‑94 (MQ=60)

                                              AAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCA                                                  >  SRR4302533.3056195/1‑94 (MQ=60)

                                              AAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCA                                                  <  SRR4302533.2182098/94‑1 (MQ=60)

                                               AGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAG                                                 >  SRR4302533.2373927/1‑94 (MQ=60)

                                               AGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAG                                                 <  SRR4302533.1742423/94‑1 (MQ=60)

                                               AGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGGACCATGCCCGCTATCTTGACATTCAG                                                 >  SRR4302533.5201274/1‑94 (MQ=60)

                                                 GCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGAT                                               >  SRR4302533.1966288/1‑94 (MQ=60)

                                                 GCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGAT                                               <  SRR4302533.3247738/94‑1 (MQ=60)

                                                  CAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATT                                              >  SRR4302533.1295202/1‑94 (MQ=60)

                                                  CAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATT                                              >  SRR4302533.4660958/1‑94 (MQ=60)

                                                  CAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATT                                              >  SRR4302533.5351437/1‑94 (MQ=60)

                                                  CAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCACGCTATCTTGACATTCAGATT                                              >  SRR4302533.6140334/1‑94 (MQ=60)

                                                   AATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTG                                             <  SRR4302533.3696588/94‑1 (MQ=60)

                                                   AATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTG                                             >  SRR4302533.1410946/1‑94 (MQ=60)

                                                   AATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTG                                             >  SRR4302533.205876/1‑94 (MQ=60)

                                                   AATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTG                                             >  SRR4302533.3266456/1‑94 (MQ=60)

                                                   AATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTG                                             >  SRR4302533.2601778/1‑94 (MQ=60)

                                                      CGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGT                                          >  SRR4302533.5144354/1‑94 (MQ=60)

                                                      CGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGATCGCCGTGCGGAGTACCATGCCAGCTATCTTGACATTCAGATTGCGT                                          >  SRR4302533.4354392/1‑94 (MQ=60)

                                                        ACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTA                                        >  SRR4302533.534603/1‑94 (MQ=60)

                                                        ACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTA                                        >  SRR4302533.534602/1‑94 (MQ=60)

                                                        ACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTA                                        <  SRR4302533.176960/94‑1 (MQ=60)

                                                        ACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTA                                        >  SRR4302533.6198281/1‑94 (MQ=60)

                                                         CTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAA                                       >  SRR4302533.2570383/1‑94 (MQ=60)

                                                         CTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAA                                       >  SRR4302533.3847346/1‑94 (MQ=60)

                                                         CTGTTTTATCTTATCTCGGAAGATATAACCGAGCCGGGCGAAGCTCGCCGTGCGGAGTACTATGCCCGCTATCTTGACATTCAGATTGTGTTAA                                       >  SRR4302533.1222011/1‑94 (MQ=60)

                                                          TGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAA                                      <  SRR4302533.4894783/94‑1 (MQ=60)

                                                          TGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAA                                      >  SRR4302533.1842617/1‑94 (MQ=60)

                                                           GTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAA                                     >  SRR4302533.967189/1‑94 (MQ=60)

                                                           GTTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAA                                     >  SRR4302533.4898463/1‑94 (MQ=60)

                                                            TTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAG                                    <  SRR4302533.2240299/94‑1 (MQ=60)

                                                            TTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAG                                    <  SRR4302533.6269614/94‑1 (MQ=60)

                                                            TTTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAG                                    <  SRR4302533.560689/94‑1 (MQ=60)

                                                             TTTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGG                                   <  SRR4302533.3585445/94‑1 (MQ=60)

                                                              TTATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTACAAGGT                                  >  SRR4302533.3422842/1‑94 (MQ=60)

                                                               TATCTTCTCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTC                                 <  SRR4302533.174151/94‑1 (MQ=60)

                                                               TATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTC                                 >  SRR4302533.3033131/1‑94 (MQ=60)

                                                                ATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCA                                >  SRR4302533.170601/1‑94 (MQ=60)

                                                                ATCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCA                                <  SRR4302533.4050056/94‑1 (MQ=60)

                                                                 TCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAG                               <  SRR4302533.769784/94‑1 (MQ=60)

                                                                 TCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAG                               >  SRR4302533.6212754/1‑94 (MQ=60)

                                                                 TCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAG                               <  SRR4302533.1107087/94‑1 (MQ=60)

                                                                 TCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAG                               >  SRR4302533.1486198/1‑94 (MQ=60)

                                                                 TCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAG                               >  SRR4302533.222349/1‑94 (MQ=60)

                                                                 TCTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAG                               <  SRR4302533.3422721/94‑1 (MQ=60)

                                                                  CTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGG                              >  SRR4302533.2256139/1‑94 (MQ=60)

                                                                  CTTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGG                              <  SRR4302533.1670384/94‑1 (MQ=60)

                                                                   TTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGA                             <  SRR4302533.4916418/94‑1 (MQ=60)

                                                                   TTATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGA                             >  SRR4302533.3209427/1‑94 (MQ=60)

                                                                     ATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAG                           <  SRR4302533.684616/94‑1 (MQ=60)

                                                                     ATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAG                           <  SRR4302533.4015937/94‑1 (MQ=60)

                                                                     ATCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAG                           <  SRR4302533.1704077/94‑1 (MQ=60)

                                                                      TCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGG                          <  SRR4302533.2095608/94‑1 (MQ=60)

                                                                      TCTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTAACATTCAGATTGTGTTAAAAGGTCAGGAAGG                          <  SRR4302533.3350296/94‑1 (MQ=60)

                                                                       CTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGC                         >  SRR4302533.2645407/1‑94 (MQ=60)

                                                                       CTCGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGC                         >  SRR4302533.2563112/1‑94 (MQ=60)

                                                                         CGGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCAT                       >  SRR4302533.1925263/1‑94 (MQ=60)

                                                                          GGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATG                      >  SRR4302533.4606497/1‑94 (MQ=60)

                                                                          GGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATG                      >  SRR4302533.4583204/1‑94 (MQ=60)

                                                                          GGAAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATG                      >  SRR4302533.167049/1‑94 (MQ=60)

                                                                            AAGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGAC                    >  SRR4302533.2844883/1‑94 (MQ=60)

                                                                             AGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACG                   >  SRR4302533.6085273/1‑94 (MQ=60)

                                                                             AGATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACC                   <  SRR4302533.2628591/94‑1 (MQ=60)

                                                                              GATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCT                  <  SRR4302533.2542361/94‑1 (MQ=60)

                                                                               ATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTT                 <  SRR4302533.3167762/94‑1 (MQ=60)

                                                                               ATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTT                 >  SRR4302533.86129/1‑94 (MQ=60)

                                                                               ATATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTT                 >  SRR4302533.1814757/1‑94 (MQ=60)

                                                                                TATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTC                <  SRR4302533.1608946/94‑1 (MQ=60)

                                                                                TATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTC                >  SRR4302533.1098905/1‑94 (MQ=60)

                                                                                TATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTC                >  SRR4302533.2242021/1‑94 (MQ=60)

                                                                                 ATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCA               <  SRR4302533.6009271/94‑1 (MQ=60)

                                                                                 ATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCA               >  SRR4302533.1040149/1‑94 (MQ=60)

                                                                                 ATGACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCA               >  SRR4302533.6157317/1‑94 (MQ=60)

                                                                                   GACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGC             >  SRR4302533.3271428/1‑94 (MQ=60)

                                                                                   GACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGC             >  SRR4302533.2755295/1‑94 (MQ=60)

                                                                                   GACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTAAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGC             >  SRR4302533.2644920/1‑94 (MQ=60)

                                                                                    ACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCA            >  SRR4302533.5365220/1‑94 (MQ=60)

                                                                                    ACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCA            >  SRR4302533.6215205/1‑94 (MQ=60)

                                                                                    ACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCA            >  SRR4302533.260984/1‑94 (MQ=60)

                                                                                    ACCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCGATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCA            >  SRR4302533.2556137/1‑94 (MQ=60)

                                                                                     CCGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCAC           >  SRR4302533.1335934/1‑94 (MQ=60)

                                                                                      CGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACG          <  SRR4302533.4756979/94‑1 (MQ=60)

                                                                                      CGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACG          <  SRR4302533.3609592/94‑1 (MQ=60)

                                                                                      CGAGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACG          <  SRR4302533.281068/94‑1 (MQ=60)

                                                                                        AGCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCA        >  SRR4302533.3068917/1‑94 (MQ=60)

                                                                                         GCCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAA       >  SRR4302533.402936/1‑94 (MQ=60)

                                                                                          CCGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAAC      >  SRR4302533.3498717/1‑94 (MQ=60)

                                                                                           CGTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACC     >  SRR4302533.4939409/1‑94 (MQ=60)

                                                                                            GTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCT    >  SRR4302533.3041712/1‑94 (MQ=60)

                                                                                            GTGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCT    >  SRR4302533.3867116/1‑94 (MQ=60)

                                                                                             TGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTG   >  SRR4302533.3516178/1‑94 (MQ=60)

                                                                                             TGCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTG   <  SRR4302533.1279660/94‑1 (MQ=60)

                                                                                              GCGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGA  >  SRR4302533.1513610/1‑94 (MQ=60)

AAGCACACGTTACGGCAGAAACGCCAAAGGG‑CAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTACGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGC  >  NC_000913/4472509‑4472695

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`