Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
647 |
270.1 |
21258240 |
98.4% |
20918108 |
94.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,011,668 |
A→G |
T140A (ACC→GCC) |
fliF → |
FliF |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,011,668 | 0 | A | G | 98.9%
| 620.9
/ ‑2.7
| 185 | T140A (ACC→GCC) | fliF | FliF |
| Reads supporting (aligned to +/- strand): ref base A (2/0); new base G (88/95); total (90/95) |
| Fisher's exact test for biased strand distribution p-value = 2.35e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.04e-01 |
Only 100 of 191 total aligned reads displayed.
GTTTCGAACTGCTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCTT > NC_000913/2011576‑2011758
|
gtTTCGAACTGCTTGATCAGGAAAAGTTTGGTATCAGACAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTAc > 1:7398871/1‑94 (MQ=255)
ttCGAACTGCTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCa < 1:9526588/94‑1 (MQ=255)
ttCGAACTGCTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCa > 2:3247590/1‑94 (MQ=255)
ttCGAACTGCTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCa < 2:6163486/94‑1 (MQ=255)
tCGAACTGCTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCAt < 2:3899031/94‑1 (MQ=255)
cGAACTGCTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATc > 2:9501987/1‑94 (MQ=255)
cGAACTGCTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATc < 2:2476164/94‑1 (MQ=255)
aaCTGCTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCAATCGa > 1:3657135/1‑94 (MQ=255)
aCTGCTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGaa > 1:1677114/1‑94 (MQ=255)
cTGCTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGaaa > 1:1126199/1‑94 (MQ=255)
tGCTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAAc > 2:7414416/1‑94 (MQ=255)
cTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTa > 2:1970911/1‑94 (MQ=255)
cTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTa > 1:5093920/1‑94 (MQ=255)
cTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTa > 2:6537336/1‑94 (MQ=255)
cTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTa < 1:9771562/94‑1 (MQ=255)
cTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTa < 1:9017196/94‑1 (MQ=255)
ttGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTAt > 2:525008/1‑94 (MQ=255)
ttGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTAt < 1:9771937/94‑1 (MQ=255)
ttGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTAt > 1:10043798/1‑94 (MQ=255)
tGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATc < 2:6094389/94‑1 (MQ=255)
gATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCg > 1:4669860/1‑94 (MQ=255)
tCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGc < 1:7347334/94‑1 (MQ=255)
acaagAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGc < 1:9072505/90‑1 (MQ=255)
cAGGAAAAGTTTTGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGcc > 2:4728474/1‑94 (MQ=255)
aGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGccc > 1:964736/1‑94 (MQ=255)
gAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGTCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCgg < 2:8829506/94‑1 (MQ=255)
gAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCgg < 2:1313324/94‑1 (MQ=255)
aGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTaaa > 2:2384860/1‑94 (MQ=255)
ttGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAgg < 2:3750942/94‑1 (MQ=255)
ttGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAgg > 1:7647692/1‑94 (MQ=255)
ttGGTATCAGCCAGTTCAGCGAACAGGTGAAGTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAgg < 2:4557153/94‑1 (MQ=255)
tGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAggg < 1:1748842/94‑1 (MQ=255)
tGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAggg > 2:5613344/1‑94 (MQ=255)
ggTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAgggg < 1:10405618/94‑1 (MQ=255)
gTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGgc > 2:2055379/1‑94 (MQ=255)
gTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGgc < 2:9521462/94‑1 (MQ=255)
tATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGgcg < 2:5129724/94‑1 (MQ=255)
tATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGgcg > 2:9046266/1‑94 (MQ=255)
gaTCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGgcg < 2:8954195/93‑1 (MQ=255)
aTCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGgcgc < 1:3387966/94‑1 (MQ=255)
tCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGgcgcg > 2:8347383/1‑94 (MQ=255)
cAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGgcgcgc > 2:1263665/1‑94 (MQ=255)
cAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAACCTATCGGCCCGGTAAAAGGGGCGCGCGTAc < 2:2107880/94‑1 (MQ=255)
ttCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACCTc > 1:8337972/1‑94 (MQ=255)
tCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCt < 2:9835607/94‑1 (MQ=255)
aGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTgg > 1:3293649/1‑94 (MQ=255)
gCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGc < 1:293313/94‑1 (MQ=255)
cGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCa < 2:4301599/94‑1 (MQ=255)
cGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCa < 2:5056861/94‑1 (MQ=255)
cGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCa < 1:7298945/94‑1 (MQ=255)
cGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCa > 1:493856/1‑94 (MQ=255)
cGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACAATCGGCCCGGTAAAAGGGGCGCGCGTGCATCTGGCa < 1:9307029/94‑1 (MQ=255)
aCAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATg > 2:10411237/1‑94 (MQ=255)
aCAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATg < 2:7725788/94‑1 (MQ=255)
aCAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATg < 2:9676074/94‑1 (MQ=255)
cAGGTGAAGTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGc < 2:1749961/94‑1 (MQ=255)
aGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGcc > 2:232759/1‑94 (MQ=255)
aGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATATGGCAATGcc > 1:7568453/1‑94 (MQ=255)
ggTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCg < 1:1760207/94‑1 (MQ=255)
gTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGa < 1:1951658/94‑1 (MQ=255)
tGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGaa < 2:10322890/94‑1 (MQ=255)
gAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGaac > 1:6128927/1‑93 (MQ=255)
aTTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAAcc < 1:5857179/94‑1 (MQ=255)
ttATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCg > 2:8184747/1‑94 (MQ=255)
ttATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCg < 2:7970717/94‑1 (MQ=255)
aTCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTc < 2:10509302/94‑1 (MQ=255)
tCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCt < 2:9943382/94‑1 (MQ=255)
tCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCt > 2:10226411/1‑94 (MQ=255)
cAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCtt < 2:3592734/94‑1 (MQ=255)
gCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTa < 1:6275277/94‑1 (MQ=255)
cGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTAt < 1:6630359/94‑1 (MQ=255)
cGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTAt < 2:1806552/94‑1 (MQ=255)
gggCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTAtt > 2:5613780/1‑94 (MQ=255)
ggCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTc < 2:257721/94‑1 (MQ=255)
gcgcTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCg < 2:10269364/94‑1 (MQ=255)
ggAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGt > 1:5632908/1‑94 (MQ=255)
aaGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGa < 2:2816485/94‑1 (MQ=255)
aaGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGa > 1:8854246/1‑94 (MQ=255)
aGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGCAACCGTCTTTATTCGTCCGTGaa > 2:5749585/1‑94 (MQ=255)
aGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGaa < 2:3319575/94‑1 (MQ=255)
aGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGaa < 1:8466230/94‑1 (MQ=255)
aGGCGAGCTTTCACGTGCCATCGAAACTATCGGCCCGGTAAACGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGaa < 1:8260755/94‑1 (MQ=255)
ggCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAAc > 1:8607237/1‑94 (MQ=255)
ggCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAAc < 2:2820673/94‑1 (MQ=255)
gCGAGCTTTCTCGTGCCATCGAAACTAGCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACa < 1:6806291/94‑1 (MQ=255)
cGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACaa > 2:8449429/1‑94 (MQ=255)
aGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACaaaa > 1:3487572/1‑94 (MQ=255)
aGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGGGACCaaaa > 2:9736280/1‑94 (MQ=255)
cTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAAt < 1:2521083/94‑1 (MQ=255)
tttCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATc > 2:2701426/1‑94 (MQ=255)
tttCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATc > 2:4127085/1‑94 (MQ=255)
tttCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATc > 1:5086071/1‑94 (MQ=255)
ttCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATcc > 2:975017/1‑94 (MQ=255)
ctcGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATcccc > 2:561192/1‑94 (MQ=255)
ctcGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATcccc > 2:183687/1‑94 (MQ=255)
tcGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCt > 1:1011431/1‑94 (MQ=255)
tcGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCt < 1:4755243/94‑1 (MQ=255)
cGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCtt > 1:10500159/1‑94 (MQ=255)
cGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATACCCtt > 1:9802229/1‑94 (MQ=255)
cGTACCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCtt > 2:4428058/1‑94 (MQ=255)
|
GTTTCGAACTGCTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCTT > NC_000913/2011576‑2011758
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGTTTCGAACTGCTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCTTCT > NC_000913/2011575‑2011760
|
GGTTTCGAACTGCTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTG > SRR4302545.327944/1‑94 (MQ=60)
GTTTCGAACTGCTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGC > SRR4302545.8265255/1‑94 (MQ=60)
GTTTCGAACTGCTTGATCAGGAAAAGTTTGGTATCAGACAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTAC > SRR4302545.7607769/1‑94 (MQ=60)
TTCGAACTGCTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCA < SRR4302545.9807083/94‑1 (MQ=60)
TTCGAACTGCTGGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCA < SRR4302545.9807084/94‑1 (MQ=60)
CGAACTGCTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATC < SRR4302545.6225642/94‑1 (MQ=60)
CGAACTGCTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATC < SRR4302545.5016804/94‑1 (MQ=60)
CGAACTGCTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATC > SRR4302545.9316011/1‑94 (MQ=60)
AACTGCTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCAATCGA > SRR4302545.3746476/1‑94 (MQ=60)
ACTGCTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAA > SRR4302545.1716835/1‑94 (MQ=60)
CTGCTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAA > SRR4302545.3283724/1‑94 (MQ=60)
CTGCTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAA > SRR4302545.1150812/1‑94 (MQ=60)
TGCTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAAC > SRR4302545.7527477/1‑94 (MQ=60)
CTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTA > SRR4302545.5223898/1‑94 (MQ=60)
CTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTA < SRR4302545.10062168/94‑1 (MQ=60)
CTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTA < SRR4302545.9279819/94‑1 (MQ=60)
CTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTA > SRR4302545.9367154/1‑94 (MQ=60)
CTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTA < SRR4302545.10062167/94‑1 (MQ=60)
TTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTAT > SRR4302545.10341243/1‑94 (MQ=60)
TTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTAT < SRR4302545.10062558/94‑1 (MQ=60)
TGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATC > SRR4302545.507662/1‑94 (MQ=60)
GATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCG > SRR4302545.9046108/1‑94 (MQ=60)
GATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCG > SRR4302545.4789048/1‑94 (MQ=60)
acaaGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGC < SRR4302545.9337698/90‑1 (MQ=60)
TCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGC < SRR4302545.7553701/94‑1 (MQ=60)
AGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCC > SRR4302545.986379/1‑94 (MQ=60)
GGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCG > SRR4302545.195511/1‑94 (MQ=60)
GAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGTCCGG > SRR4302545.7743768/1‑94 (MQ=60)
GAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTCTCTCGTGCCATCGAAACTATCGGCCCGG < SRR4302545.1421931/94‑1 (MQ=60)
AGTTTGATATCAGCCAGTTAAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGCAACTATCGGCCCGGTAAA < SRR4302545.9665769/94‑1 (MQ=60)
GTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAA < SRR4302545.8586530/94‑1 (MQ=60)
TTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAG > SRR4302545.3680630/1‑94 (MQ=60)
TTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGG > SRR4302545.7864107/1‑94 (MQ=60)
TGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGG < SRR4302545.6510536/94‑1 (MQ=60)
TGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGG < SRR4302545.1790695/94‑1 (MQ=60)
GGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGG < SRR4302545.10712349/94‑1 (MQ=60)
GTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGC < SRR4302545.1729825/94‑1 (MQ=60)
ATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGC < SRR4302545.3470529/94‑1 (MQ=60)
CAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTAC < SRR4302545.5558443/94‑1 (MQ=60)
GTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACAT > SRR4302545.7802189/1‑94 (MQ=60)
TTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACCTC > SRR4302545.8579578/1‑94 (MQ=60)
TTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATC > SRR4302545.8579576/1‑94 (MQ=60)
AGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGG > SRR4302545.3374273/1‑94 (MQ=60)
GCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGC < SRR4302545.299445/94‑1 (MQ=60)
TGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCA > SRR4302545.1113113/1‑94 (MQ=60)
CGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCA < SRR4302545.9235056/94‑1 (MQ=60)
CGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCA > SRR4302545.504887/1‑94 (MQ=60)
CGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCA < SRR4302545.7503635/94‑1 (MQ=60)
CGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACAATCGGCCCGGTAAAAGGGGCGCGCGTGCATCTGGCA < SRR4302545.9579892/94‑1 (MQ=60)
AACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAAT < SRR4302545.8184059/94‑1 (MQ=60)
AACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAAT < SRR4302545.10641968/94‑1 (MQ=60)
AACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGGGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAAT < SRR4302545.418339/94‑1 (MQ=60)
AGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATATGGCAATGCC > SRR4302545.7782354/1‑94 (MQ=60)
GGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCG < SRR4302545.1802343/94‑1 (MQ=60)
GGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCG < SRR4302545.1802342/94‑1 (MQ=60)
GTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGA > SRR4302545.10090363/1‑94 (MQ=60)
GTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGA < SRR4302545.2000051/94‑1 (MQ=60)
GAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAC > SRR4302545.6295570/1‑94 (MQ=60)
ATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACC < SRR4302545.6014954/94‑1 (MQ=60)
ATGATCAGCGCGCGCTGGAAGGCGATCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACC < SRR4302545.6014952/94‑1 (MQ=60)
ATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTC > SRR4302545.7242176/1‑94 (MQ=60)
ATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTC > SRR4302545.10776308/1‑94 (MQ=60)
CAGCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTT < SRR4302545.3476464/94‑1 (MQ=60)
GCGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTA < SRR4302545.6446366/94‑1 (MQ=60)
CGGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTAT < SRR4302545.6812097/94‑1 (MQ=60)
GGGCGCTGGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCGGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATT < SRR4302545.2131702/94‑1 (MQ=60)
TGGACGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAAGCGTCTTTATTCGTCCG > SRR4302545.4781368/1‑94 (MQ=60)
TGGAAGGCGAGCTTTTTCGTGCCATCGAAACCATCGGCCCGGTAAAAGGGGCGCGCGTACACCTGGCAATGCCGAAACCGCTTTTATTCGTACG > SRR4302545.9981560/1‑94 (MQ=60)
GGAAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGT > SRR4302545.5782743/1‑94 (MQ=60)
AAGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGA > SRR4302545.9111421/1‑94 (MQ=60)
AGGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAA < SRR4302545.8710895/94‑1 (MQ=60)
AGGCGAGCTTTCACGTGCCATCGAAACTATCGGCCCGGTAAACGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAA < SRR4302545.8499841/94‑1 (MQ=60)
GGCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAAC > SRR4302545.8856334/1‑94 (MQ=60)
GCGAGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACA < SRR4302545.10201243/94‑1 (MQ=60)
GCGAGCTTTCTCGTGCCATCGAAACTAGCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACA < SRR4302545.6993302/94‑1 (MQ=60)
GAGCTTTCTCATGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAA < SRR4302545.6973014/94‑1 (MQ=60)
AGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAA > SRR4302545.2799878/1‑94 (MQ=60)
AGCTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAA > SRR4302545.3573063/1‑94 (MQ=60)
CTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAAT < SRR4302545.2582002/94‑1 (MQ=60)
CTTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAAT < SRR4302545.4801296/94‑1 (MQ=60)
TTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATC > SRR4302545.5219760/1‑94 (MQ=60)
TTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATC > SRR4302545.5215750/1‑94 (MQ=60)
TTTCTCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATC > SRR4302545.7577043/1‑94 (MQ=60)
TCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCT < SRR4302545.4876711/94‑1 (MQ=60)
TCGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCT > SRR4302545.1033771/1‑94 (MQ=60)
CGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCTT > SRR4302545.10809655/1‑94 (MQ=60)
CGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCTT > SRR4302545.2257131/1‑94 (MQ=60)
CGTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATACCCTT > SRR4302545.10093487/1‑94 (MQ=60)
GTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCTTC < SRR4302545.367389/94‑1 (MQ=60)
GTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCTTC < SRR4302545.7090494/94‑1 (MQ=60)
GTGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCTTC < SRR4302545.7363303/94‑1 (MQ=60)
TGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCTTCT > SRR4302545.1063427/1‑94 (MQ=60)
TGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCTTCT < SRR4302545.2035842/94‑1 (MQ=60)
TGCCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGAGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCTTCT < SRR4302545.1323005/94‑1 (MQ=60)
|
GGTTTCGAACTGCTTGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGGAAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCTTCT > NC_000913/2011575‑2011760
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
